Wall clock time and date at job start Tue Mar 31 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38506 * 120.86162 * 2 1 4 4 Cl 1.73601 * 120.36267 * 0.02562 * 3 2 1 5 5 C 1.38435 * 119.27765 * 180.02562 * 3 2 1 6 6 N 1.31939 * 121.06232 * 359.97438 * 5 3 2 7 7 C 1.31670 * 121.89270 * 359.72729 * 6 5 3 8 8 C 1.39557 * 120.59425 * 0.53863 * 7 6 5 9 9 C 1.47844 * 120.55288 * 179.75629 * 8 7 6 10 10 O 1.21558 * 120.00100 * 173.66672 * 9 8 7 11 11 N 1.34776 * 119.99761 * 353.66228 * 9 8 7 12 12 C 1.46503 * 119.99793 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47201 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.88608 * 57.42202 * 13 12 11 15 15 C 1.54911 * 111.00311 * 293.54556 * 13 12 11 16 16 N 1.47428 * 104.83095 * 204.87885 * 15 13 12 17 17 C 1.36939 * 125.64719 * 204.09179 * 16 15 13 18 18 H 1.07998 * 119.99670 * 6.50655 * 17 16 15 19 19 C 1.38812 * 119.99813 * 186.51350 * 17 16 15 20 20 N 1.31619 * 120.00087 * 7.48062 * 19 17 16 21 21 Si 1.86802 * 119.99944 * 187.48044 * 19 17 16 22 22 H 1.48501 * 109.46863 * 84.98832 * 21 19 17 23 23 H 1.48502 * 109.46913 * 324.99299 * 21 19 17 24 24 H 1.48499 * 109.47320 * 204.99370 * 21 19 17 25 25 C 1.47025 * 108.70558 * 24.35589 * 16 15 13 26 26 C 1.54337 * 107.26335 * 358.58311 * 25 16 15 27 27 H 1.09003 * 110.51320 * 96.45060 * 26 25 16 28 28 O 1.42896 * 111.00296 * 219.60230 * 26 25 16 29 29 H 1.09007 * 109.47074 * 263.47586 * 1 2 3 30 30 H 1.09000 * 109.47172 * 23.46821 * 1 2 3 31 31 H 1.08993 * 109.47414 * 143.47881 * 1 2 3 32 32 H 1.08000 * 119.46646 * 180.02562 * 5 3 2 33 33 H 1.07998 * 119.70121 * 180.28673 * 7 6 5 34 34 H 0.96998 * 120.00055 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47087 * 59.99837 * 12 11 9 36 36 H 1.09000 * 109.46880 * 300.00147 * 12 11 9 37 37 H 1.08989 * 110.36827 * 86.03805 * 15 13 12 38 38 H 1.09005 * 110.45973 * 323.75877 * 15 13 12 39 39 H 0.97000 * 119.99840 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88561 * 118.12678 * 25 16 15 41 41 H 1.09004 * 109.88317 * 239.30069 * 25 16 15 42 42 H 0.96699 * 114.00549 * 293.78255 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3818 2.7106 0.0007 5 6 3.6013 1.1507 -0.0005 6 7 4.2506 0.0021 -0.0005 7 6 3.6197 -1.1536 0.0053 8 6 2.2250 -1.2015 0.0004 9 6 1.5176 -2.4997 0.0016 10 8 0.3076 -2.5325 0.1135 11 7 2.2143 -3.6469 -0.1216 12 6 1.5132 -4.9333 -0.1210 13 6 2.5287 -6.0675 -0.2727 14 1 3.2731 -6.0316 0.5228 15 6 3.2032 -6.0262 -1.6666 16 7 3.6405 -7.4120 -1.9155 17 6 4.6546 -7.7904 -2.7544 18 1 5.2778 -7.0414 -3.2203 19 6 4.8813 -9.1366 -3.0060 20 7 4.0358 -10.0410 -2.5594 21 14 6.3864 -9.6644 -3.9783 22 1 7.5495 -9.7855 -3.0630 23 1 6.6817 -8.6506 -5.0225 24 1 6.1245 -10.9766 -4.6224 25 6 2.8034 -8.3208 -1.1188 26 6 1.8208 -7.4477 -0.3100 27 1 0.8621 -7.3756 -0.8236 28 8 1.6467 -7.9625 1.0116 29 1 -0.3633 -0.1168 1.0211 30 1 -0.3633 0.9426 -0.4093 31 1 -0.3634 -0.8258 -0.6115 32 1 4.1583 2.0759 -0.0001 33 1 4.1867 -2.0728 0.0097 34 1 3.1798 -3.6207 -0.2106 35 1 0.8079 -4.9631 -0.9515 36 1 0.9735 -5.0525 0.8184 37 1 4.0613 -5.3543 -1.6530 38 1 2.4881 -5.7118 -2.4268 39 1 4.1941 -10.9817 -2.7356 40 1 2.2510 -8.9901 -1.7784 41 1 3.4282 -8.8997 -0.4385 42 1 1.2085 -8.8239 1.0437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958150806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:18 Heat of formation + Delta-G solvation = -28.675924 kcal Electronic energy + Delta-G solvation = -26614.055699 eV Core-core repulsion = 22620.778503 eV Total energy + Delta-G solvation = -3993.277197 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.16017 -39.39487 -38.24974 -37.11180 -35.39891 -34.88103 -33.99304 -32.56979 -31.63222 -29.76732 -28.34352 -27.56604 -25.79066 -24.79042 -23.52526 -22.54383 -21.14098 -20.31340 -19.97843 -18.16946 -17.47154 -16.98299 -16.82774 -16.61051 -15.83243 -15.71900 -15.54777 -15.08531 -14.71603 -14.25429 -14.01814 -13.65225 -13.39924 -13.32466 -13.16517 -13.03901 -12.74139 -12.49255 -12.40408 -12.37038 -12.02840 -11.63056 -11.61010 -11.26784 -11.07668 -10.86306 -10.65000 -10.41747 -10.11747 -9.99183 -9.95940 -9.83152 -9.68387 -9.43961 -9.29842 -9.09745 -8.71613 -6.94930 -5.80332 -3.16904 0.13090 0.56601 1.53918 2.53896 2.93542 3.33577 3.35386 3.40410 3.41999 3.84067 4.12458 4.19101 4.33566 4.40370 4.61388 4.66118 4.81070 4.98098 5.09725 5.14377 5.28010 5.34058 5.43523 5.44500 5.60041 5.67131 5.78241 5.82706 5.90365 5.95983 6.07629 6.13184 6.25916 6.31604 6.45166 6.73988 7.27634 7.29638 7.32638 7.45632 7.67973 7.98769 8.11445 8.14591 9.09646 9.71021 10.34888 11.29968 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002382 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.930213 B =11752.694804 C =12931.333039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.029 3.971 3 C -0.106 4.106 4 Cl -0.046 7.046 5 C 0.139 3.861 6 N -0.475 5.475 7 C 0.144 3.856 8 C -0.179 4.179 9 C 0.562 3.438 10 O -0.528 6.528 11 N -0.715 5.715 12 C 0.134 3.866 13 C -0.109 4.109 14 H 0.090 0.910 15 C 0.140 3.860 16 N -0.600 5.600 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.920 5.920 21 Si 0.914 3.086 22 H -0.287 1.287 23 H -0.281 1.281 24 H -0.290 1.290 25 C 0.147 3.853 26 C 0.085 3.915 27 H 0.058 0.942 28 O -0.567 6.567 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.401 0.599 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.254 0.746 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 20.467 6.895 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.020 3.980 3 C -0.135 4.135 4 Cl -0.017 7.017 5 C -0.018 4.018 6 N -0.183 5.183 7 C -0.014 4.014 8 C -0.185 4.185 9 C 0.348 3.652 10 O -0.406 6.406 11 N -0.366 5.366 12 C 0.011 3.989 13 C -0.129 4.129 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.327 5.327 17 C -0.361 4.361 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.567 5.567 21 Si 0.744 3.256 22 H -0.215 1.215 23 H -0.206 1.206 24 H -0.217 1.217 25 C 0.022 3.978 26 C 0.025 3.975 27 H 0.076 0.924 28 O -0.372 6.372 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -5.487 20.903 7.030 22.726 hybrid contribution 0.164 -0.778 -0.731 1.080 sum -5.323 20.125 6.299 21.749 Atomic orbital electron populations 1.21188 0.88058 1.04407 1.04708 1.20372 0.98293 0.89748 0.89601 1.21939 0.94003 0.88085 1.09467 1.98380 1.78108 1.28350 1.96876 1.23018 0.89364 0.97418 0.92045 1.67882 1.39455 0.97776 1.13193 1.23186 0.90516 0.96899 0.90815 1.20906 0.94906 0.94220 1.08418 1.17823 0.86941 0.83217 0.77183 1.90750 1.13339 1.86988 1.49572 1.45958 1.11151 1.06004 1.73487 1.21437 0.94692 0.80226 1.02541 1.22621 0.97472 0.92577 1.00223 0.89141 1.21610 0.96146 0.89160 0.91696 1.44303 1.38311 0.99469 1.50655 1.19043 1.05464 0.91555 1.19989 0.90270 1.24827 0.99005 0.95843 1.00650 1.69923 1.35939 1.00479 1.50380 0.86115 0.82285 0.77834 0.79384 1.21459 1.20639 1.21659 1.21881 0.91566 0.91287 0.93102 1.23104 0.97882 0.93338 0.83224 0.92412 1.86414 1.83238 1.39669 1.27881 0.89345 0.91085 0.87679 0.81297 0.81440 0.76310 0.91006 0.90806 0.93966 0.95883 0.93621 0.91914 0.93984 0.77632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.56 36.00 0.31 -0.94 16 2 C 0.03 0.30 5.96 -103.88 -0.62 -0.32 16 3 C -0.11 -0.96 6.33 -39.41 -0.25 -1.21 16 4 Cl -0.05 -0.36 27.35 -51.86 -1.42 -1.78 16 5 C 0.14 1.21 10.97 -17.43 -0.19 1.02 16 6 N -0.47 -4.83 10.34 -12.88 -0.13 -4.96 16 7 C 0.14 1.40 10.70 -17.13 -0.18 1.22 16 8 C -0.18 -1.93 5.89 -104.83 -0.62 -2.55 16 9 C 0.56 7.01 7.72 -12.33 -0.10 6.92 16 10 O -0.53 -7.86 13.51 5.31 0.07 -7.79 16 11 N -0.71 -8.39 5.36 -61.25 -0.33 -8.72 16 12 C 0.13 1.83 5.13 -4.04 -0.02 1.81 16 13 C -0.11 -1.75 2.83 -88.47 -0.25 -2.00 16 14 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 15 C 0.14 2.63 6.40 -2.53 -0.02 2.61 16 16 N -0.60 -14.55 3.39 -170.06 -0.58 -15.13 16 17 C -0.23 -6.24 10.26 -15.06 -0.15 -6.40 16 18 H 0.08 2.04 7.84 -52.49 -0.41 1.63 16 19 C -0.01 -0.18 5.45 -17.43 -0.09 -0.28 16 20 N -0.92 -26.22 10.48 55.49 0.58 -25.64 16 21 Si 0.91 21.56 29.56 -169.99 -5.02 16.53 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.15 3.37 5.21 -3.06 -0.02 3.36 16 26 C 0.08 1.49 3.78 -24.89 -0.09 1.40 16 27 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 28 O -0.57 -9.31 13.40 -35.23 -0.47 -9.78 16 29 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 30 H 0.07 0.59 6.77 -51.93 -0.35 0.24 16 31 H 0.10 1.20 5.98 -51.93 -0.31 0.89 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 33 H 0.17 1.26 6.47 -52.49 -0.34 0.92 16 34 H 0.40 3.96 6.44 -40.82 -0.26 3.70 16 35 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 36 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.04 0.73 8.14 -51.94 -0.42 0.31 16 38 H 0.02 0.44 8.01 -51.93 -0.42 0.03 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.06 1.60 7.00 -51.93 -0.36 1.24 16 41 H 0.04 1.08 7.83 -51.93 -0.41 0.67 16 42 H 0.38 4.76 9.12 45.56 0.42 5.18 16 LS Contribution 360.45 15.07 5.43 5.43 Total: -1.00 -32.11 360.45 -8.70 -40.81 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.53 Total: 6.40 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: -2.29 Total: 4.63 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.46 Total: -54.45 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.40 Total: -17.57 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.42 Total: -1.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.11 -8.70 -40.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958150806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.129 kcal (2) G-P(sol) polarization free energy of solvation -32.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds