Wall clock time and date at job start Tue Mar 31 2020 22:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38506 * 120.86162 * 2 1 4 4 Cl 1.73601 * 120.36267 * 0.02562 * 3 2 1 5 5 C 1.38435 * 119.27765 * 180.02562 * 3 2 1 6 6 N 1.31939 * 121.06232 * 359.97438 * 5 3 2 7 7 C 1.31670 * 121.89270 * 359.72729 * 6 5 3 8 8 C 1.39557 * 120.59425 * 0.53863 * 7 6 5 9 9 C 1.47844 * 120.55288 * 179.75629 * 8 7 6 10 10 O 1.21558 * 120.00100 * 173.66672 * 9 8 7 11 11 N 1.34776 * 119.99761 * 353.66228 * 9 8 7 12 12 C 1.46503 * 119.99793 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47201 * 180.02562 * 12 11 9 14 14 H 1.09003 * 110.88608 * 57.42202 * 13 12 11 15 15 C 1.54911 * 111.00311 * 293.54556 * 13 12 11 16 16 N 1.47428 * 104.83095 * 204.87885 * 15 13 12 17 17 C 1.36939 * 125.64719 * 204.09179 * 16 15 13 18 18 H 1.07998 * 119.99670 * 6.50655 * 17 16 15 19 19 C 1.38812 * 119.99813 * 186.51350 * 17 16 15 20 20 N 1.31619 * 120.00087 * 7.48062 * 19 17 16 21 21 Si 1.86802 * 119.99944 * 187.48044 * 19 17 16 22 22 H 1.48501 * 109.46863 * 84.98832 * 21 19 17 23 23 H 1.48502 * 109.46913 * 324.99299 * 21 19 17 24 24 H 1.48499 * 109.47320 * 204.99370 * 21 19 17 25 25 C 1.47025 * 108.70558 * 24.35589 * 16 15 13 26 26 C 1.54337 * 107.26335 * 358.58311 * 25 16 15 27 27 H 1.09003 * 110.51320 * 96.45060 * 26 25 16 28 28 O 1.42896 * 111.00296 * 219.60230 * 26 25 16 29 29 H 1.09007 * 109.47074 * 263.47586 * 1 2 3 30 30 H 1.09000 * 109.47172 * 23.46821 * 1 2 3 31 31 H 1.08993 * 109.47414 * 143.47881 * 1 2 3 32 32 H 1.08000 * 119.46646 * 180.02562 * 5 3 2 33 33 H 1.07998 * 119.70121 * 180.28673 * 7 6 5 34 34 H 0.96998 * 120.00055 * 0.02562 * 11 9 8 35 35 H 1.09001 * 109.47087 * 59.99837 * 12 11 9 36 36 H 1.09000 * 109.46880 * 300.00147 * 12 11 9 37 37 H 1.08989 * 110.36827 * 86.03805 * 15 13 12 38 38 H 1.09005 * 110.45973 * 323.75877 * 15 13 12 39 39 H 0.97000 * 119.99840 * 179.97438 * 20 19 17 40 40 H 1.08998 * 109.88561 * 118.12678 * 25 16 15 41 41 H 1.09004 * 109.88317 * 239.30069 * 25 16 15 42 42 H 0.96699 * 114.00549 * 293.78255 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3818 2.7106 0.0007 5 6 3.6013 1.1507 -0.0005 6 7 4.2506 0.0021 -0.0005 7 6 3.6197 -1.1536 0.0053 8 6 2.2250 -1.2015 0.0004 9 6 1.5176 -2.4997 0.0016 10 8 0.3076 -2.5325 0.1135 11 7 2.2143 -3.6469 -0.1216 12 6 1.5132 -4.9333 -0.1210 13 6 2.5287 -6.0675 -0.2727 14 1 3.2731 -6.0316 0.5228 15 6 3.2032 -6.0262 -1.6666 16 7 3.6405 -7.4120 -1.9155 17 6 4.6546 -7.7904 -2.7544 18 1 5.2778 -7.0414 -3.2203 19 6 4.8813 -9.1366 -3.0060 20 7 4.0358 -10.0410 -2.5594 21 14 6.3864 -9.6644 -3.9783 22 1 7.5495 -9.7855 -3.0630 23 1 6.6817 -8.6506 -5.0225 24 1 6.1245 -10.9766 -4.6224 25 6 2.8034 -8.3208 -1.1188 26 6 1.8208 -7.4477 -0.3100 27 1 0.8621 -7.3756 -0.8236 28 8 1.6467 -7.9625 1.0116 29 1 -0.3633 -0.1168 1.0211 30 1 -0.3633 0.9426 -0.4093 31 1 -0.3634 -0.8258 -0.6115 32 1 4.1583 2.0759 -0.0001 33 1 4.1867 -2.0728 0.0097 34 1 3.1798 -3.6207 -0.2106 35 1 0.8079 -4.9631 -0.9515 36 1 0.9735 -5.0525 0.8184 37 1 4.0613 -5.3543 -1.6530 38 1 2.4881 -5.7118 -2.4268 39 1 4.1941 -10.9817 -2.7356 40 1 2.2510 -8.9901 -1.7784 41 1 3.4282 -8.8997 -0.4385 42 1 1.2085 -8.8239 1.0437 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958150806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:18 Heat of formation + Delta-G solvation = -52.284338 kcal Electronic energy + Delta-G solvation = -26615.079437 eV Core-core repulsion = 22620.778503 eV Total energy + Delta-G solvation = -3994.300935 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.96890 -40.43648 -39.62690 -37.77139 -36.66547 -36.29096 -34.81222 -34.13099 -32.69555 -31.21322 -29.45804 -28.92577 -27.28130 -25.90835 -24.81348 -23.36963 -22.41175 -21.75512 -21.31779 -19.22986 -18.72182 -18.38226 -18.00045 -17.42957 -17.09284 -16.73907 -16.52059 -16.39929 -15.93298 -15.65556 -15.42905 -14.76705 -14.62810 -14.42204 -14.11685 -14.01179 -13.92615 -13.84848 -13.58918 -13.32428 -13.13442 -13.05507 -13.03593 -12.73751 -12.46356 -12.29225 -12.25830 -11.90338 -11.77943 -11.45134 -11.21147 -10.88042 -10.78238 -10.70679 -10.55777 -10.17141 -10.06855 -8.92088 -7.85601 -5.23741 -0.61622 -0.17485 0.86259 1.47184 1.49012 1.56661 1.66446 1.97267 2.48406 2.55088 3.14736 3.24718 3.33654 3.42293 3.46116 3.52842 3.59244 3.74202 3.87292 3.90268 4.14236 4.16921 4.40303 4.43609 4.46315 4.54494 4.63102 4.66650 4.75945 4.88704 4.95067 4.96891 5.08981 5.23376 5.33228 5.39154 5.41751 5.50708 5.69919 6.17552 6.38351 6.57949 6.88849 7.04950 7.06845 7.74445 8.37662 9.23018 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017420 B = 0.002382 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1606.930213 B =11752.694804 C =12931.333039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.019 3.981 3 C -0.108 4.108 4 Cl -0.034 7.034 5 C 0.144 3.856 6 N -0.490 5.490 7 C 0.147 3.853 8 C -0.191 4.191 9 C 0.565 3.435 10 O -0.556 6.556 11 N -0.709 5.709 12 C 0.149 3.851 13 C -0.090 4.090 14 H 0.090 0.910 15 C 0.137 3.863 16 N -0.623 5.623 17 C -0.242 4.242 18 H 0.087 0.913 19 C -0.067 4.067 20 N -0.950 5.950 21 Si 0.977 3.023 22 H -0.286 1.286 23 H -0.267 1.267 24 H -0.297 1.297 25 C 0.155 3.845 26 C 0.098 3.902 27 H 0.075 0.925 28 O -0.569 6.569 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.196 0.804 33 H 0.187 0.813 34 H 0.412 0.588 35 H 0.070 0.930 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.028 0.972 39 H 0.247 0.753 40 H 0.028 0.972 41 H 0.004 0.996 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.277 22.719 7.140 24.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.010 3.990 3 C -0.137 4.137 4 Cl -0.005 7.005 5 C -0.013 4.013 6 N -0.199 5.199 7 C -0.011 4.011 8 C -0.196 4.196 9 C 0.352 3.648 10 O -0.436 6.436 11 N -0.360 5.360 12 C 0.025 3.975 13 C -0.110 4.110 14 H 0.108 0.892 15 C 0.012 3.988 16 N -0.350 5.350 17 C -0.371 4.371 18 H 0.105 0.895 19 C -0.260 4.260 20 N -0.599 5.599 21 Si 0.805 3.195 22 H -0.213 1.213 23 H -0.192 1.192 24 H -0.224 1.224 25 C 0.029 3.971 26 C 0.038 3.962 27 H 0.093 0.907 28 O -0.376 6.376 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.213 0.787 33 H 0.204 0.796 34 H 0.249 0.751 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.046 0.954 39 H 0.056 0.944 40 H 0.046 0.954 41 H 0.022 0.978 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -4.922 23.191 7.283 24.801 hybrid contribution -0.026 -1.398 -0.791 1.606 sum -4.948 21.794 6.492 23.272 Atomic orbital electron populations 1.21108 0.88053 1.04304 1.04359 1.20512 0.98514 0.90236 0.89712 1.21962 0.94256 0.88187 1.09290 1.98386 1.77937 1.27422 1.96804 1.23465 0.89407 0.98011 0.90394 1.67958 1.39779 0.98239 1.13884 1.23456 0.90139 0.97644 0.89838 1.20775 0.95348 0.93419 1.10077 1.18028 0.86624 0.83736 0.76407 1.90744 1.14555 1.87401 1.50863 1.45815 1.11640 1.05244 1.73324 1.21154 0.93759 0.80081 1.02525 1.22422 0.97551 0.92566 0.98453 0.89168 1.21801 0.97037 0.86712 0.93205 1.44609 1.38084 1.01989 1.50338 1.19466 1.06005 0.91878 1.19703 0.89506 1.25659 1.01782 0.96162 1.02368 1.70140 1.37543 1.00219 1.51964 0.85116 0.78956 0.77169 0.78235 1.21325 1.19201 1.22360 1.21657 0.91499 0.91663 0.92259 1.22865 0.97191 0.92976 0.83182 0.90711 1.86385 1.83497 1.40963 1.26773 0.89454 0.89867 0.89386 0.78713 0.79641 0.75098 0.91213 0.90684 0.92196 0.95416 0.94406 0.95354 0.97754 0.75732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.29 8.56 71.24 0.61 -1.68 16 2 C 0.02 0.37 5.96 -19.38 -0.12 0.25 16 3 C -0.11 -1.75 6.33 22.38 0.14 -1.61 16 4 Cl -0.03 -0.47 27.35 -2.72 -0.07 -0.55 16 5 C 0.14 2.15 10.97 84.72 0.93 3.08 16 6 N -0.49 -8.83 10.34 -194.67 -2.01 -10.85 16 7 C 0.15 2.55 10.70 85.04 0.91 3.46 16 8 C -0.19 -3.82 5.89 -20.00 -0.12 -3.93 16 9 C 0.56 13.29 7.72 86.79 0.67 13.96 16 10 O -0.56 -16.07 13.51 -3.90 -0.05 -16.12 16 11 N -0.71 -15.21 5.36 -465.97 -2.50 -17.71 16 12 C 0.15 3.75 5.13 86.38 0.44 4.19 16 13 C -0.09 -2.74 2.83 -9.40 -0.03 -2.77 16 14 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 15 C 0.14 4.96 6.40 86.86 0.56 5.51 16 16 N -0.62 -30.30 3.39 -691.95 -2.35 -32.65 16 17 C -0.24 -13.00 10.26 84.03 0.86 -12.14 16 18 H 0.09 4.41 7.84 -2.91 -0.02 4.38 16 19 C -0.07 -3.69 5.45 84.86 0.46 -3.23 16 20 N -0.95 -55.86 10.48 21.65 0.23 -55.63 16 21 Si 0.98 44.69 29.56 68.60 2.03 46.72 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 C 0.16 7.28 5.21 86.73 0.45 7.74 16 26 C 0.10 3.39 3.78 31.79 0.12 3.51 16 27 H 0.08 2.37 8.04 -2.39 -0.02 2.35 16 28 O -0.57 -18.00 13.40 -148.98 -2.00 -19.99 16 29 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 30 H 0.08 1.29 6.77 -2.39 -0.02 1.28 16 31 H 0.09 1.99 5.98 -2.39 -0.01 1.97 16 32 H 0.20 1.75 8.06 -2.91 -0.02 1.73 16 33 H 0.19 2.32 6.47 -2.91 -0.02 2.31 16 34 H 0.41 7.11 6.44 -92.71 -0.60 6.51 16 35 H 0.07 1.84 8.10 -2.39 -0.02 1.82 16 36 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.03 1.00 8.01 -2.38 -0.02 0.99 16 39 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 40 H 0.03 1.51 7.00 -2.39 -0.02 1.49 16 41 H 0.00 0.23 7.83 -2.38 -0.02 0.21 16 42 H 0.39 9.56 9.12 -74.06 -0.68 8.89 16 Total: -1.00 -69.90 360.45 -1.02 -70.92 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -0.19 Total: 19.50 kcal Atomic # 6 Polarization: 10.45 SS G_CDS: 5.90 Total: 16.35 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -6.63 Total: -116.83 kcal Atomic # 8 Polarization: -34.06 SS G_CDS: -2.05 Total: -36.11 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.55 kcal Total: -69.90 -1.02 -70.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958150806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.637 kcal (2) G-P(sol) polarization free energy of solvation -69.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds