Wall clock time and date at job start Tue Mar 31 2020 22:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47431 * 59.99453 * 3 2 1 6 6 H 1.48509 * 109.46813 * 299.99227 * 3 2 1 7 7 C 1.38817 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99999 * 155.64691 * 7 2 1 9 9 N 1.36932 * 119.99926 * 335.64707 * 7 2 1 10 10 C 1.47166 * 121.06599 * 150.21939 * 9 7 2 11 11 C 1.53277 * 108.55448 * 128.87896 * 10 9 7 12 12 O 1.43098 * 109.22678 * 52.89712 * 11 10 9 13 13 C 1.42074 * 114.31800 * 298.84613 * 12 11 10 14 14 C 1.54521 * 110.33135 * 298.06796 * 13 12 11 15 15 C 1.55022 * 101.52888 * 276.06715 * 14 13 12 16 16 N 1.47486 * 104.89840 * 323.62697 * 15 14 13 17 17 C 1.34773 * 125.66251 * 204.01225 * 16 15 14 18 18 O 1.21715 * 119.99968 * 174.30712 * 17 16 15 19 19 C 1.46554 * 120.00292 * 354.29783 * 17 16 15 20 20 C 1.37924 * 126.23358 * 175.72053 * 19 17 16 21 21 C 1.39752 * 107.11863 * 179.88612 * 20 19 17 22 22 C 1.35651 * 107.88745 * 0.38988 * 21 20 19 23 23 Cl 1.73605 * 125.57412 * 179.72669 * 22 21 20 24 24 N 1.35581 * 108.85217 * 359.75672 * 22 21 20 25 25 H 0.96991 * 125.70142 * 179.97438 * 24 22 21 26 26 C 1.47190 * 108.67359 * 24.01214 * 16 15 14 27 27 C 1.47309 * 121.06833 * 329.94212 * 9 7 2 28 28 H 0.97000 * 119.99886 * 174.12899 * 1 2 3 29 29 H 1.09003 * 109.62155 * 248.60225 * 10 9 7 30 30 H 1.09002 * 109.62246 * 8.96735 * 10 9 7 31 31 H 1.08999 * 109.50648 * 172.81272 * 11 10 9 32 32 H 1.08994 * 109.51007 * 292.96401 * 11 10 9 33 33 H 1.08998 * 111.01299 * 34.13289 * 14 13 12 34 34 H 1.09003 * 111.01018 * 158.00461 * 14 13 12 35 35 H 1.08997 * 110.35241 * 204.77378 * 15 14 13 36 36 H 1.09001 * 110.35342 * 82.48016 * 15 14 13 37 37 H 1.07997 * 126.43878 * 0.03291 * 20 19 17 38 38 H 1.08007 * 126.05149 * 180.14756 * 21 20 19 39 39 H 1.08996 * 109.91087 * 239.13332 * 26 16 15 40 40 H 1.09001 * 110.06545 * 117.95256 * 26 16 15 41 41 H 1.08998 * 109.68055 * 349.11820 * 27 9 7 42 42 H 1.09001 * 109.68224 * 109.66770 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 1.2123 6 1 1.8915 2.3963 -1.2127 7 6 2.0103 -1.2022 0.0005 8 1 3.0182 -1.2440 -0.3851 9 7 1.4170 -2.3351 0.4900 10 6 1.7697 -3.6642 -0.0341 11 6 2.1091 -4.5800 1.1472 12 8 1.0349 -4.5482 2.0919 13 6 0.7800 -3.2646 2.6450 14 6 2.0148 -2.7617 3.4261 15 6 1.8092 -3.4434 4.8031 16 7 0.3507 -3.4240 5.0217 17 6 -0.2650 -3.4764 6.2195 18 8 -1.4735 -3.3495 6.2885 19 6 0.5206 -3.6864 7.4387 20 6 0.0380 -3.6790 8.7308 21 6 1.1236 -3.9219 9.5767 22 6 2.2302 -4.0619 8.8047 23 17 3.8361 -4.3703 9.3879 24 7 1.8772 -3.9209 7.5033 25 1 2.4789 -3.9756 6.7445 26 6 -0.3207 -3.3380 3.7147 27 6 0.4096 -2.2630 1.5624 28 1 -0.4850 -0.8356 -0.0859 29 1 0.9247 -4.0762 -0.5858 30 1 2.6323 -3.5799 -0.6952 31 1 2.2485 -5.5999 0.7887 32 1 3.0251 -4.2331 1.6253 33 1 2.9386 -3.0998 2.9565 34 1 2.0014 -1.6760 3.5214 35 1 2.3173 -2.8791 5.5851 36 1 2.1749 -4.4699 4.7764 37 1 -0.9866 -3.5184 9.0320 38 1 1.0884 -3.9830 10.6545 39 1 -0.9389 -2.4413 3.6733 40 1 -0.9376 -4.2219 3.5523 41 1 0.3933 -1.2579 1.9838 42 1 -0.5731 -2.5088 1.1600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972538315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:51 Heat of formation + Delta-G solvation = 6.137587 kcal Electronic energy + Delta-G solvation = -27985.420106 eV Core-core repulsion = 23993.652536 eV Total energy + Delta-G solvation = -3991.767570 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74087 -40.21879 -38.66320 -37.05275 -36.43067 -34.84657 -32.22676 -31.40077 -31.26592 -29.85310 -29.40128 -27.40002 -25.91709 -24.04310 -23.19649 -22.08981 -21.45044 -20.87841 -20.45990 -19.14463 -18.04086 -17.64510 -16.73116 -16.46823 -15.64294 -15.52195 -15.11409 -14.80961 -14.56167 -14.43845 -14.16584 -13.88790 -13.59749 -13.36588 -13.29634 -13.18767 -12.84884 -12.80821 -12.49710 -12.41232 -12.02497 -11.76214 -11.60919 -11.34798 -11.20913 -10.79837 -10.69174 -10.58942 -10.23083 -10.21129 -10.06888 -9.53761 -9.45309 -9.30408 -8.84054 -8.49585 -8.42243 -7.03405 -6.20464 -3.43201 1.08884 1.27776 2.25906 2.71803 2.97686 3.19861 3.41802 3.43617 3.56793 3.91946 4.28976 4.43669 4.46364 4.72441 4.88055 4.92239 4.96578 5.07906 5.20456 5.28081 5.33248 5.53598 5.56752 5.59517 5.73406 5.74328 5.81505 5.88233 5.99108 6.07248 6.10198 6.23982 6.26188 6.35850 6.44944 6.49922 6.64490 6.78283 6.82488 7.33786 7.61231 7.83708 7.99133 8.39829 8.90483 9.65521 10.10070 11.06487 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.003098 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.482904 B = 9034.791357 C = 9213.929899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.019 4.019 3 Si 1.068 2.932 4 H -0.291 1.291 5 H -0.289 1.289 6 H -0.292 1.292 7 C -0.355 4.355 8 H 0.058 0.942 9 N -0.597 5.597 10 C 0.110 3.890 11 C 0.045 3.955 12 O -0.374 6.374 13 C 0.092 3.908 14 C -0.141 4.141 15 C 0.087 3.913 16 N -0.613 5.613 17 C 0.603 3.397 18 O -0.523 6.523 19 C -0.024 4.024 20 C -0.101 4.101 21 C -0.176 4.176 22 C 0.081 3.919 23 Cl -0.017 7.017 24 N -0.535 5.535 25 H 0.422 0.578 26 C 0.126 3.874 27 C 0.143 3.857 28 H 0.270 0.730 29 H 0.026 0.974 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.092 0.908 35 H 0.070 0.930 36 H 0.072 0.928 37 H 0.159 0.841 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.792 -9.601 15.653 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.222 4.222 3 Si 0.897 3.103 4 H -0.217 1.217 5 H -0.215 1.215 6 H -0.219 1.219 7 C -0.484 4.484 8 H 0.076 0.924 9 N -0.322 5.322 10 C -0.016 4.016 11 C -0.032 4.032 12 O -0.293 6.293 13 C 0.050 3.950 14 C -0.179 4.179 15 C -0.036 4.036 16 N -0.346 5.346 17 C 0.392 3.608 18 O -0.400 6.400 19 C -0.137 4.137 20 C -0.127 4.127 21 C -0.202 4.202 22 C -0.062 4.062 23 Cl 0.011 6.989 24 N -0.140 5.140 25 H 0.267 0.733 26 C 0.004 3.996 27 C 0.016 3.984 28 H 0.081 0.919 29 H 0.044 0.956 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.090 0.910 37 H 0.177 0.823 38 H 0.172 0.828 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 6.067 -8.053 15.720 18.675 hybrid contribution 1.070 -1.611 -0.608 2.028 sum 7.137 -9.664 15.112 19.305 Atomic orbital electron populations 1.70735 1.06645 1.30528 1.46982 1.25926 0.96516 1.01600 0.98180 0.83495 0.74353 0.75510 0.76926 1.21738 1.21530 1.21888 1.19944 0.97111 0.87858 1.43445 0.92433 1.44105 1.48231 1.01667 1.38200 1.21607 0.98956 0.87071 0.93975 1.23132 0.89324 1.00009 0.90771 1.87699 1.53927 1.28575 1.59149 1.22366 0.93398 0.85838 0.93390 1.23198 1.00334 1.01842 0.92542 1.22624 0.81215 1.00615 0.99155 1.48451 1.07519 1.72732 1.05944 1.16548 0.86488 0.77307 0.80477 1.90874 1.12824 1.50763 1.85492 1.20470 0.81897 1.15455 0.95904 1.21298 0.99785 1.02284 0.89341 1.20681 0.89774 1.09802 0.99956 1.21085 0.88375 1.11727 0.84995 1.98405 1.19809 1.94443 1.86232 1.42802 1.08658 1.55380 1.07186 0.73344 1.21841 0.94717 1.03530 0.79484 1.21252 0.92188 0.97264 0.87696 0.91852 0.95631 0.91632 0.89622 0.93276 0.88829 0.88978 0.91245 0.90988 0.82335 0.82773 0.89201 0.90067 0.89578 0.95259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.09 12.60 55.49 0.70 -25.39 16 2 C -0.02 -0.51 4.71 -17.43 -0.08 -0.59 16 3 Si 1.07 24.06 29.98 -169.99 -5.10 18.96 16 4 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.35 -9.21 9.52 -15.06 -0.14 -9.35 16 8 H 0.06 1.51 7.94 -52.49 -0.42 1.09 16 9 N -0.60 -13.82 2.76 -172.44 -0.48 -14.30 16 10 C 0.11 2.15 6.72 -3.54 -0.02 2.12 16 11 C 0.05 0.73 6.76 37.30 0.25 0.98 16 12 O -0.37 -6.54 10.23 -35.23 -0.36 -6.90 16 13 C 0.09 1.60 0.83 -89.95 -0.07 1.53 16 14 C -0.14 -2.15 5.90 -24.86 -0.15 -2.29 16 15 C 0.09 1.08 5.27 -2.43 -0.01 1.07 16 16 N -0.61 -9.12 3.33 -172.26 -0.57 -9.70 16 17 C 0.60 9.38 7.80 -12.91 -0.10 9.28 16 18 O -0.52 -9.71 17.22 5.18 0.09 -9.62 16 19 C -0.02 -0.30 6.85 -81.93 -0.56 -0.87 16 20 C -0.10 -1.16 10.65 -39.13 -0.42 -1.57 16 21 C -0.18 -1.72 10.78 -39.94 -0.43 -2.15 16 22 C 0.08 0.80 7.74 -16.82 -0.13 0.67 16 23 Cl -0.02 -0.14 29.30 -51.86 -1.52 -1.66 16 24 N -0.54 -5.66 5.41 -6.54 -0.04 -5.70 16 25 H 0.42 3.87 5.24 -40.82 -0.21 3.66 16 26 C 0.13 2.10 6.25 -3.32 -0.02 2.08 16 27 C 0.14 3.09 3.42 -4.07 -0.01 3.07 16 28 H 0.27 7.86 6.69 -40.82 -0.27 7.58 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 31 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.75 6.13 -51.93 -0.32 0.44 16 33 H 0.09 1.40 5.98 -51.93 -0.31 1.09 16 34 H 0.09 1.52 7.84 -51.93 -0.41 1.12 16 35 H 0.07 0.73 6.06 -51.93 -0.31 0.41 16 36 H 0.07 0.80 7.92 -51.93 -0.41 0.39 16 37 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 38 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.09 1.56 7.79 -51.93 -0.40 1.15 16 40 H 0.08 1.36 8.06 -51.93 -0.42 0.94 16 41 H 0.09 2.07 6.52 -51.93 -0.34 1.73 16 42 H 0.03 0.68 7.70 -51.93 -0.40 0.28 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -30.64 349.61 -9.04 -39.67 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -5.13 Total: 5.37 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.91 Total: 3.99 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: -0.39 Total: -55.08 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.27 Total: -16.52 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.10 Total: 18.96 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.52 Total: -1.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.64 -9.04 -39.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972538315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.812 kcal (2) G-P(sol) polarization free energy of solvation -30.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds