Wall clock time and date at job start Tue Mar 31 2020 22:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47121 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47431 * 59.99453 * 3 2 1 6 6 H 1.48509 * 109.46813 * 299.99227 * 3 2 1 7 7 C 1.38817 * 120.00072 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99999 * 155.64691 * 7 2 1 9 9 N 1.36932 * 119.99926 * 335.64707 * 7 2 1 10 10 C 1.47166 * 121.06599 * 150.21939 * 9 7 2 11 11 C 1.53277 * 108.55448 * 128.87896 * 10 9 7 12 12 O 1.43098 * 109.22678 * 52.89712 * 11 10 9 13 13 C 1.42074 * 114.31800 * 298.84613 * 12 11 10 14 14 C 1.54521 * 110.33135 * 298.06796 * 13 12 11 15 15 C 1.55022 * 101.52888 * 276.06715 * 14 13 12 16 16 N 1.47486 * 104.89840 * 323.62697 * 15 14 13 17 17 C 1.34773 * 125.66251 * 204.01225 * 16 15 14 18 18 O 1.21715 * 119.99968 * 174.30712 * 17 16 15 19 19 C 1.46554 * 120.00292 * 354.29783 * 17 16 15 20 20 C 1.37924 * 126.23358 * 175.72053 * 19 17 16 21 21 C 1.39752 * 107.11863 * 179.88612 * 20 19 17 22 22 C 1.35651 * 107.88745 * 0.38988 * 21 20 19 23 23 Cl 1.73605 * 125.57412 * 179.72669 * 22 21 20 24 24 N 1.35581 * 108.85217 * 359.75672 * 22 21 20 25 25 H 0.96991 * 125.70142 * 179.97438 * 24 22 21 26 26 C 1.47190 * 108.67359 * 24.01214 * 16 15 14 27 27 C 1.47309 * 121.06833 * 329.94212 * 9 7 2 28 28 H 0.97000 * 119.99886 * 174.12899 * 1 2 3 29 29 H 1.09003 * 109.62155 * 248.60225 * 10 9 7 30 30 H 1.09002 * 109.62246 * 8.96735 * 10 9 7 31 31 H 1.08999 * 109.50648 * 172.81272 * 11 10 9 32 32 H 1.08994 * 109.51007 * 292.96401 * 11 10 9 33 33 H 1.08998 * 111.01299 * 34.13289 * 14 13 12 34 34 H 1.09003 * 111.01018 * 158.00461 * 14 13 12 35 35 H 1.08997 * 110.35241 * 204.77378 * 15 14 13 36 36 H 1.09001 * 110.35342 * 82.48016 * 15 14 13 37 37 H 1.07997 * 126.43878 * 0.03291 * 20 19 17 38 38 H 1.08007 * 126.05149 * 180.14756 * 21 20 19 39 39 H 1.08996 * 109.91087 * 239.13332 * 26 16 15 40 40 H 1.09001 * 110.06545 * 117.95256 * 26 16 15 41 41 H 1.08998 * 109.68055 * 349.11820 * 27 9 7 42 42 H 1.09001 * 109.68224 * 109.66770 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 1.2123 6 1 1.8915 2.3963 -1.2127 7 6 2.0103 -1.2022 0.0005 8 1 3.0182 -1.2440 -0.3851 9 7 1.4170 -2.3351 0.4900 10 6 1.7697 -3.6642 -0.0341 11 6 2.1091 -4.5800 1.1472 12 8 1.0349 -4.5482 2.0919 13 6 0.7800 -3.2646 2.6450 14 6 2.0148 -2.7617 3.4261 15 6 1.8092 -3.4434 4.8031 16 7 0.3507 -3.4240 5.0217 17 6 -0.2650 -3.4764 6.2195 18 8 -1.4735 -3.3495 6.2885 19 6 0.5206 -3.6864 7.4387 20 6 0.0380 -3.6790 8.7308 21 6 1.1236 -3.9219 9.5767 22 6 2.2302 -4.0619 8.8047 23 17 3.8361 -4.3703 9.3879 24 7 1.8772 -3.9209 7.5033 25 1 2.4789 -3.9756 6.7445 26 6 -0.3207 -3.3380 3.7147 27 6 0.4096 -2.2630 1.5624 28 1 -0.4850 -0.8356 -0.0859 29 1 0.9247 -4.0762 -0.5858 30 1 2.6323 -3.5799 -0.6952 31 1 2.2485 -5.5999 0.7887 32 1 3.0251 -4.2331 1.6253 33 1 2.9386 -3.0998 2.9565 34 1 2.0014 -1.6760 3.5214 35 1 2.3173 -2.8791 5.5851 36 1 2.1749 -4.4699 4.7764 37 1 -0.9866 -3.5184 9.0320 38 1 1.0884 -3.9830 10.6545 39 1 -0.9389 -2.4413 3.6733 40 1 -0.9376 -4.2219 3.5523 41 1 0.3933 -1.2579 1.9838 42 1 -0.5731 -2.5088 1.1600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972538315.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:50 Heat of formation + Delta-G solvation = -13.479290 kcal Electronic energy + Delta-G solvation = -27986.270758 eV Core-core repulsion = 23993.652536 eV Total energy + Delta-G solvation = -3992.618221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.67223 -41.51298 -39.95134 -37.80859 -37.75599 -36.58499 -33.48265 -33.19319 -32.31296 -31.11634 -30.42218 -28.94115 -27.51991 -25.44849 -24.67449 -23.47243 -22.61267 -21.88127 -21.37615 -20.60643 -19.52396 -19.14528 -17.85085 -17.78938 -16.94908 -16.81375 -16.44707 -16.14136 -15.87663 -15.66939 -15.53008 -15.28755 -15.13657 -14.70324 -14.50264 -14.31448 -14.08226 -13.85270 -13.79126 -13.71113 -13.38958 -12.84458 -12.78256 -12.67310 -12.52730 -12.34527 -12.28871 -12.06697 -11.90981 -11.83161 -11.46659 -11.18417 -10.91079 -10.46224 -10.28098 -10.03039 -9.29742 -8.98266 -8.27792 -5.50189 0.13186 0.50595 1.42608 1.56378 1.57859 1.64472 1.79639 2.11931 2.14633 2.53397 2.61879 3.04722 3.24307 3.28782 3.39639 3.66538 3.74899 4.00313 4.04266 4.08575 4.15590 4.19471 4.24285 4.34863 4.41385 4.49985 4.56163 4.67467 4.73301 4.80602 4.83176 4.89632 4.92985 4.97544 5.04944 5.15644 5.37106 5.63064 5.79893 5.98629 6.16080 6.22998 6.30941 6.80451 6.92592 7.66399 8.13083 8.94860 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.003098 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.482904 B = 9034.791357 C = 9213.929899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.071 4.071 3 Si 1.115 2.885 4 H -0.267 1.267 5 H -0.289 1.289 6 H -0.294 1.294 7 C -0.350 4.350 8 H 0.059 0.941 9 N -0.613 5.613 10 C 0.103 3.897 11 C 0.053 3.947 12 O -0.377 6.377 13 C 0.102 3.898 14 C -0.136 4.136 15 C 0.095 3.905 16 N -0.614 5.614 17 C 0.601 3.399 18 O -0.565 6.565 19 C -0.049 4.049 20 C -0.099 4.099 21 C -0.175 4.175 22 C 0.089 3.911 23 Cl 0.002 6.998 24 N -0.530 5.530 25 H 0.428 0.572 26 C 0.131 3.869 27 C 0.154 3.846 28 H 0.253 0.747 29 H 0.013 0.987 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.162 0.838 38 H 0.180 0.820 39 H 0.071 0.929 40 H 0.078 0.922 41 H 0.055 0.945 42 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.776 -10.896 17.669 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.268 4.268 3 Si 0.940 3.060 4 H -0.191 1.191 5 H -0.216 1.216 6 H -0.221 1.221 7 C -0.480 4.480 8 H 0.076 0.924 9 N -0.339 5.339 10 C -0.022 4.022 11 C -0.024 4.024 12 O -0.296 6.296 13 C 0.060 3.940 14 C -0.174 4.174 15 C -0.027 4.027 16 N -0.346 5.346 17 C 0.393 3.607 18 O -0.445 6.445 19 C -0.162 4.162 20 C -0.126 4.126 21 C -0.200 4.200 22 C -0.055 4.055 23 Cl 0.031 6.969 24 N -0.135 5.135 25 H 0.274 0.726 26 C 0.008 3.992 27 C 0.027 3.973 28 H 0.063 0.937 29 H 0.031 0.969 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.180 0.820 38 H 0.198 0.802 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 9.105 -9.391 17.731 22.034 hybrid contribution 0.187 -1.283 -1.253 1.803 sum 9.293 -10.674 16.478 21.721 Atomic orbital electron populations 1.70865 1.07793 1.29436 1.50248 1.27206 0.96477 1.04953 0.98192 0.82867 0.74581 0.72051 0.76535 1.19135 1.21599 1.22135 1.20194 0.96954 0.88822 1.42010 0.92373 1.44331 1.48080 1.02520 1.38931 1.21819 0.98654 0.85967 0.95789 1.23204 0.89226 1.01078 0.88910 1.87711 1.54713 1.27846 1.59315 1.22021 0.94905 0.84946 0.92151 1.23096 0.99349 1.01011 0.93923 1.22731 0.79780 1.02146 0.98031 1.48457 1.08533 1.72562 1.05098 1.16924 0.86296 0.76401 0.81127 1.90842 1.14683 1.52796 1.86133 1.20059 0.82876 1.18317 0.94937 1.21535 1.00597 1.01236 0.89242 1.20985 0.88891 1.09044 1.01119 1.21310 0.89338 1.10170 0.84668 1.98423 1.18369 1.94223 1.85909 1.42686 1.07826 1.55207 1.07793 0.72647 1.21595 0.94475 1.02511 0.80643 1.21002 0.90774 0.96972 0.88550 0.93722 0.96866 0.90979 0.85951 0.91674 0.87751 0.90748 0.88773 0.88443 0.82049 0.80221 0.91114 0.90420 0.92680 0.98221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 12.60 21.65 0.27 -56.09 16 2 C -0.07 -3.89 4.71 84.86 0.40 -3.49 16 3 Si 1.11 48.94 29.98 68.60 2.06 51.00 16 4 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 5 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 7 C -0.35 -18.36 9.52 84.04 0.80 -17.56 16 8 H 0.06 3.01 7.94 -2.91 -0.02 2.98 16 9 N -0.61 -28.86 2.76 -699.47 -1.93 -30.80 16 10 C 0.10 3.95 6.72 86.35 0.58 4.53 16 11 C 0.05 1.56 6.76 72.07 0.49 2.04 16 12 O -0.38 -12.59 10.23 -148.98 -1.52 -14.11 16 13 C 0.10 3.56 0.83 -10.36 -0.01 3.55 16 14 C -0.14 -3.96 5.90 31.80 0.19 -3.77 16 15 C 0.10 2.14 5.27 86.88 0.46 2.60 16 16 N -0.61 -17.98 3.33 -817.13 -2.72 -20.71 16 17 C 0.60 18.63 7.80 86.41 0.67 19.30 16 18 O -0.57 -21.58 17.22 -4.40 -0.08 -21.65 16 19 C -0.05 -1.18 6.85 40.30 0.28 -0.91 16 20 C -0.10 -2.11 10.65 22.56 0.24 -1.87 16 21 C -0.18 -2.89 10.78 22.04 0.24 -2.65 16 22 C 0.09 1.47 7.74 83.51 0.65 2.12 16 23 Cl 0.00 0.03 29.30 -2.72 -0.08 -0.05 16 24 N -0.53 -9.74 5.41 -174.62 -0.95 -10.68 16 25 H 0.43 6.41 5.24 -92.72 -0.49 5.92 16 26 C 0.13 4.48 6.25 86.47 0.54 5.02 16 27 C 0.15 6.98 3.42 85.92 0.29 7.27 16 28 H 0.25 15.60 6.69 -92.71 -0.62 14.98 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 2.64 7.96 -2.39 -0.02 2.62 16 31 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 32 H 0.07 1.76 6.13 -2.39 -0.01 1.74 16 33 H 0.10 2.83 5.98 -2.39 -0.01 2.81 16 34 H 0.07 2.45 7.84 -2.39 -0.02 2.43 16 35 H 0.09 1.68 6.06 -2.39 -0.01 1.67 16 36 H 0.10 1.77 7.92 -2.39 -0.02 1.76 16 37 H 0.16 3.24 8.06 -2.91 -0.02 3.22 16 38 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.07 2.66 7.79 -2.39 -0.02 2.64 16 40 H 0.08 2.69 8.06 -2.39 -0.02 2.67 16 41 H 0.05 2.82 6.52 -2.39 -0.02 2.80 16 42 H 0.00 -0.01 7.70 -2.39 -0.02 -0.02 16 Total: -1.00 -69.05 349.61 1.60 -67.46 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: 0.73 Total: 19.44 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: 5.81 Total: 16.20 kcal Atomic # 7 Polarization: -112.94 SS G_CDS: -5.33 Total: -118.27 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.60 Total: -35.77 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 2.06 Total: 51.00 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.08 Total: -0.05 kcal Total: -69.05 1.60 -67.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972538315.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.979 kcal (2) G-P(sol) polarization free energy of solvation -69.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds