Wall clock time and date at job start Tue Mar 31 2020 22:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48497 * 109.46872 * 269.99710 * 3 2 1 5 5 H 1.48502 * 109.47204 * 29.99684 * 3 2 1 6 6 H 1.48502 * 109.46853 * 149.99686 * 3 2 1 7 7 C 1.38814 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99640 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.48239 * 125.78902 * 359.97437 * 9 7 2 11 11 C 1.52329 * 105.86633 * 176.83287 * 10 9 7 12 12 H 1.08991 * 110.24405 * 272.17709 * 11 10 9 13 13 C 1.51446 * 117.45076 * 145.31683 * 11 10 9 14 14 C 1.53841 * 107.03744 * 181.22131 * 13 11 10 15 15 C 1.52524 * 111.65583 * 57.20517 * 14 13 11 16 16 H 1.09005 * 109.02946 * 185.37971 * 15 14 13 17 17 N 1.46495 * 109.03672 * 66.45613 * 15 14 13 18 18 C 1.34772 * 120.00807 * 84.99790 * 17 15 14 19 19 O 1.21590 * 119.99596 * 0.02562 * 18 17 15 20 20 C 1.47518 * 120.00454 * 180.02562 * 18 17 15 21 21 C 1.36790 * 126.92789 * 179.71356 * 20 18 17 22 22 C 1.41404 * 103.83563 * 179.87293 * 21 20 18 23 23 Cl 1.73607 * 126.72382 * 180.13335 * 22 21 20 24 24 N 1.30225 * 106.55375 * 0.38822 * 22 21 20 25 25 O 1.20893 * 111.95661 * 359.74681 * 24 22 21 26 26 C 1.53815 * 111.70679 * 305.95148 * 15 14 13 27 27 C 1.51612 * 107.02316 * 57.53825 * 26 15 14 28 28 H 1.09006 * 110.50791 * 55.20532 * 27 26 15 29 29 C 1.48670 * 125.77820 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00119 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.16903 * 57.73771 * 10 9 7 32 32 H 1.09000 * 110.16713 * 295.93579 * 10 9 7 33 33 H 1.08996 * 109.94187 * 300.60838 * 13 11 10 34 34 H 1.09001 * 109.93588 * 61.75712 * 13 11 10 35 35 H 1.09005 * 109.03767 * 177.75907 * 14 13 11 36 36 H 1.08992 * 109.04371 * 296.71343 * 14 13 11 37 37 H 0.97002 * 119.99675 * 264.99435 * 17 15 14 38 38 H 1.07999 * 128.07893 * 359.97090 * 21 20 18 39 39 H 1.09000 * 109.94526 * 176.91844 * 26 15 14 40 40 H 1.09004 * 109.93904 * 298.07453 * 26 15 14 41 41 H 1.08993 * 110.62543 * 37.11729 * 29 9 7 42 42 H 1.09002 * 110.76045 * 274.15464 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1493 -2.5375 0.0005 11 6 -0.4161 -4.0350 -0.0804 12 1 -0.4497 -4.3564 -1.1213 13 6 -1.6222 -4.5704 0.6628 14 6 -1.6454 -6.0934 0.4465 15 6 -0.3505 -6.7484 0.9161 16 1 -0.3732 -7.8069 0.6569 17 7 -0.2482 -6.6154 2.3715 18 6 -0.8492 -7.5156 3.1744 19 8 -1.4759 -8.4386 2.6909 20 6 -0.7466 -7.3813 4.6399 21 6 -1.3009 -8.2043 5.5814 22 6 -0.8979 -7.6322 6.8101 23 17 -1.2777 -8.2150 8.4008 24 7 -0.1905 -6.5794 6.5149 25 8 -0.0933 -6.4206 5.3204 26 6 0.8835 -6.0993 0.2666 27 6 0.8447 -4.6244 0.6157 28 1 0.7870 -4.4890 1.6958 29 6 1.9354 -3.7438 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5783 -2.0320 -0.8646 32 1 -0.5683 -2.1301 0.9207 33 1 -1.5330 -4.3472 1.7259 34 1 -2.5329 -4.1232 0.2644 35 1 -2.4810 -6.5188 1.0023 36 1 -1.7826 -6.2998 -0.6149 37 1 0.2521 -5.8793 2.7572 38 1 -1.9041 -9.0861 5.4232 39 1 1.7930 -6.5512 0.6624 40 1 0.8451 -6.2278 -0.8151 41 1 2.8347 -3.7603 0.6161 42 1 2.1613 -4.0659 -1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980211007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:24 Heat of formation + Delta-G solvation = 50.061258 kcal Electronic energy + Delta-G solvation = -27354.171258 eV Core-core repulsion = 23364.308362 eV Total energy + Delta-G solvation = -3989.862896 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.58386 -40.56068 -38.89047 -37.56337 -35.84450 -34.18919 -33.50961 -32.49214 -31.81417 -30.67480 -28.93657 -26.43695 -25.25949 -24.51574 -24.04996 -22.04309 -21.63809 -20.75945 -19.84465 -19.37750 -18.97319 -18.35960 -16.75598 -16.73828 -16.21652 -15.63788 -15.40872 -14.93114 -14.52250 -14.33851 -14.18677 -14.02808 -13.66487 -13.28511 -13.17566 -12.90078 -12.79468 -12.34197 -12.24491 -12.02629 -11.55573 -11.46473 -11.24544 -11.10624 -10.88528 -10.78235 -10.71493 -10.58980 -10.51791 -10.25149 -10.03665 -9.95360 -9.87534 -9.57113 -9.46360 -9.13107 -8.60209 -6.82460 -5.69429 -3.02399 0.30955 0.98941 1.36201 2.14444 2.63829 2.90459 3.40885 3.45988 3.47828 3.77876 4.24730 4.46152 4.49626 4.55159 4.73836 4.79696 4.95111 5.19646 5.24836 5.27365 5.50867 5.55901 5.59082 5.63751 5.75148 5.86162 6.04316 6.07420 6.17040 6.21616 6.25400 6.34503 6.51058 6.57601 6.61716 6.78848 6.96496 7.04755 7.44024 7.56068 7.64511 7.70545 7.83825 8.24019 9.21657 9.82374 10.49791 11.42452 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.002735 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.839654 B =10236.597242 C =11563.908478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.010 4.010 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.609 5.609 10 C 0.188 3.812 11 C -0.116 4.116 12 H 0.064 0.936 13 C -0.100 4.100 14 C -0.128 4.128 15 C 0.149 3.851 16 H 0.090 0.910 17 N -0.700 5.700 18 C 0.605 3.395 19 O -0.512 6.512 20 C -0.066 4.066 21 C -0.139 4.139 22 C 0.049 3.951 23 Cl 0.032 6.968 24 N -0.323 5.323 25 O 0.142 5.858 26 C -0.112 4.112 27 C -0.110 4.110 28 H 0.071 0.929 29 C 0.143 3.857 30 H 0.251 0.749 31 H 0.049 0.951 32 H 0.038 0.962 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.410 0.590 38 H 0.194 0.806 39 H 0.069 0.931 40 H 0.083 0.917 41 H 0.038 0.962 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -19.128 8.859 21.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.206 4.206 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.354 4.354 8 H 0.095 0.905 9 N -0.336 5.336 10 C 0.064 3.936 11 C -0.135 4.135 12 H 0.083 0.917 13 C -0.138 4.138 14 C -0.166 4.166 15 C 0.046 3.954 16 H 0.108 0.892 17 N -0.352 5.352 18 C 0.387 3.613 19 O -0.388 6.388 20 C -0.132 4.132 21 C -0.162 4.162 22 C -0.134 4.134 23 Cl 0.060 6.940 24 N -0.023 5.023 25 O 0.064 5.936 26 C -0.150 4.150 27 C -0.130 4.130 28 H 0.089 0.911 29 C 0.017 3.983 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.248 0.752 38 H 0.211 0.789 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.057 0.943 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.435 -18.691 9.395 21.199 hybrid contribution 0.162 0.644 0.286 0.723 sum -3.274 -18.047 9.680 20.739 Atomic orbital electron populations 1.69956 1.04827 1.24919 1.57275 1.24780 0.95710 0.97565 1.02506 0.86145 0.78593 0.83662 0.77518 1.21694 1.21734 1.20750 1.19056 0.90382 0.82488 1.43481 0.90544 1.45088 1.01421 0.99637 1.87449 1.20803 0.84144 0.87766 1.00884 1.22178 0.93632 0.99385 0.98351 0.91711 1.21248 0.98648 0.93510 1.00423 1.21953 0.96472 0.96485 1.01703 1.21248 0.95985 1.00851 0.77305 0.89223 1.46219 1.52547 1.28655 1.07758 1.16426 0.80231 0.83006 0.81612 1.90885 1.41768 1.32772 1.73379 1.24335 1.00724 0.92467 0.95684 1.22725 1.02759 1.02784 0.87944 1.24076 1.02554 0.95783 0.90980 1.98429 1.92229 1.85792 1.17551 1.73914 1.16865 1.17021 0.94456 1.85111 1.55079 1.41717 1.11726 1.21674 0.96051 0.95979 1.01343 1.22090 0.98319 0.92818 0.99748 0.91074 1.21277 0.94057 0.86169 0.96768 0.93845 0.93231 0.94394 0.92116 0.91746 0.91777 0.90869 0.75236 0.78858 0.91257 0.89820 0.94321 0.96107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.79 10.36 55.49 0.58 -26.21 16 2 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.23 -6.19 10.30 -15.06 -0.16 -6.34 16 8 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 9 N -0.61 -14.99 3.45 -170.40 -0.59 -15.58 16 10 C 0.19 4.34 5.07 -3.43 -0.02 4.33 16 11 C -0.12 -1.94 2.31 -90.35 -0.21 -2.15 16 12 H 0.06 1.07 7.92 -51.93 -0.41 0.66 16 13 C -0.10 -1.41 5.57 -27.08 -0.15 -1.56 16 14 C -0.13 -1.47 5.42 -26.54 -0.14 -1.62 16 15 C 0.15 1.60 2.71 -67.75 -0.18 1.42 16 16 H 0.09 0.95 7.52 -51.93 -0.39 0.56 16 17 N -0.70 -7.38 4.65 -54.68 -0.25 -7.63 16 18 C 0.61 6.77 7.76 -12.48 -0.10 6.67 16 19 O -0.51 -6.85 16.54 5.29 0.09 -6.76 16 20 C -0.07 -0.68 7.29 -36.32 -0.26 -0.95 16 21 C -0.14 -1.28 10.96 -38.90 -0.43 -1.71 16 22 C 0.05 0.50 7.97 -17.03 -0.14 0.36 16 23 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 24 N -0.32 -3.83 12.05 32.82 0.40 -3.43 16 25 O 0.14 1.58 11.04 15.56 0.17 1.75 16 26 C -0.11 -1.26 5.38 -27.01 -0.15 -1.40 16 27 C -0.11 -1.66 2.41 -89.88 -0.22 -1.87 16 28 H 0.07 1.08 6.20 -51.93 -0.32 0.75 16 29 C 0.14 2.73 6.90 -2.80 -0.02 2.71 16 30 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 31 H 0.05 1.30 7.30 -51.93 -0.38 0.92 16 32 H 0.04 0.97 7.60 -51.93 -0.39 0.58 16 33 H 0.06 0.88 7.89 -51.93 -0.41 0.47 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.41 4.17 6.62 -40.82 -0.27 3.90 16 38 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.90 7.98 -51.93 -0.41 0.49 16 41 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -30.83 355.91 -8.55 -39.38 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: -5.50 Total: -0.12 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.26 Total: -2.47 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: 0.13 Total: -52.86 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: 0.26 Total: -5.02 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.83 -8.55 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.443 kcal (2) G-P(sol) polarization free energy of solvation -30.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.382 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds