Wall clock time and date at job start Tue Mar 31 2020 22:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99861 * 2 1 4 4 H 1.48497 * 109.46872 * 269.99710 * 3 2 1 5 5 H 1.48502 * 109.47204 * 29.99684 * 3 2 1 6 6 H 1.48502 * 109.46853 * 149.99686 * 3 2 1 7 7 C 1.38814 * 119.99954 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99640 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99769 * 0.02562 * 7 2 1 10 10 C 1.48239 * 125.78902 * 359.97437 * 9 7 2 11 11 C 1.52329 * 105.86633 * 176.83287 * 10 9 7 12 12 H 1.08991 * 110.24405 * 272.17709 * 11 10 9 13 13 C 1.51446 * 117.45076 * 145.31683 * 11 10 9 14 14 C 1.53841 * 107.03744 * 181.22131 * 13 11 10 15 15 C 1.52524 * 111.65583 * 57.20517 * 14 13 11 16 16 H 1.09005 * 109.02946 * 185.37971 * 15 14 13 17 17 N 1.46495 * 109.03672 * 66.45613 * 15 14 13 18 18 C 1.34772 * 120.00807 * 84.99790 * 17 15 14 19 19 O 1.21590 * 119.99596 * 0.02562 * 18 17 15 20 20 C 1.47518 * 120.00454 * 180.02562 * 18 17 15 21 21 C 1.36790 * 126.92789 * 179.71356 * 20 18 17 22 22 C 1.41404 * 103.83563 * 179.87293 * 21 20 18 23 23 Cl 1.73607 * 126.72382 * 180.13335 * 22 21 20 24 24 N 1.30225 * 106.55375 * 0.38822 * 22 21 20 25 25 O 1.20893 * 111.95661 * 359.74681 * 24 22 21 26 26 C 1.53815 * 111.70679 * 305.95148 * 15 14 13 27 27 C 1.51612 * 107.02316 * 57.53825 * 26 15 14 28 28 H 1.09006 * 110.50791 * 55.20532 * 27 26 15 29 29 C 1.48670 * 125.77820 * 179.97438 * 9 7 2 30 30 H 0.96998 * 120.00119 * 0.02562 * 1 2 3 31 31 H 1.08998 * 110.16903 * 57.73771 * 10 9 7 32 32 H 1.09000 * 110.16713 * 295.93579 * 10 9 7 33 33 H 1.08996 * 109.94187 * 300.60838 * 13 11 10 34 34 H 1.09001 * 109.93588 * 61.75712 * 13 11 10 35 35 H 1.09005 * 109.03767 * 177.75907 * 14 13 11 36 36 H 1.08992 * 109.04371 * 296.71343 * 14 13 11 37 37 H 0.97002 * 119.99675 * 264.99435 * 17 15 14 38 38 H 1.07999 * 128.07893 * 359.97090 * 21 20 18 39 39 H 1.09000 * 109.94526 * 176.91844 * 26 15 14 40 40 H 1.09004 * 109.93904 * 298.07453 * 26 15 14 41 41 H 1.08993 * 110.62543 * 37.11729 * 29 9 7 42 42 H 1.09002 * 110.76045 * 274.15464 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 -0.1493 -2.5375 0.0005 11 6 -0.4161 -4.0350 -0.0804 12 1 -0.4497 -4.3564 -1.1213 13 6 -1.6222 -4.5704 0.6628 14 6 -1.6454 -6.0934 0.4465 15 6 -0.3505 -6.7484 0.9161 16 1 -0.3732 -7.8069 0.6569 17 7 -0.2482 -6.6154 2.3715 18 6 -0.8492 -7.5156 3.1744 19 8 -1.4759 -8.4386 2.6909 20 6 -0.7466 -7.3813 4.6399 21 6 -1.3009 -8.2043 5.5814 22 6 -0.8979 -7.6322 6.8101 23 17 -1.2777 -8.2150 8.4008 24 7 -0.1905 -6.5794 6.5149 25 8 -0.0933 -6.4206 5.3204 26 6 0.8835 -6.0993 0.2666 27 6 0.8447 -4.6244 0.6157 28 1 0.7870 -4.4890 1.6958 29 6 1.9354 -3.7438 0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5783 -2.0320 -0.8646 32 1 -0.5683 -2.1301 0.9207 33 1 -1.5330 -4.3472 1.7259 34 1 -2.5329 -4.1232 0.2644 35 1 -2.4810 -6.5188 1.0023 36 1 -1.7826 -6.2998 -0.6149 37 1 0.2521 -5.8793 2.7572 38 1 -1.9041 -9.0861 5.4232 39 1 1.7930 -6.5512 0.6624 40 1 0.8451 -6.2278 -0.8151 41 1 2.8347 -3.7603 0.6161 42 1 2.1613 -4.0659 -1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980211007.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:23 Heat of formation + Delta-G solvation = 31.078354 kcal Electronic energy + Delta-G solvation = -27354.994419 eV Core-core repulsion = 23364.308362 eV Total energy + Delta-G solvation = -3990.686057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.39012 -41.58077 -40.06688 -38.28044 -37.19039 -35.09026 -34.72147 -33.72576 -33.09808 -31.91525 -30.48342 -27.87958 -26.91927 -25.48264 -24.84523 -23.52400 -22.48581 -21.93179 -21.40904 -20.36092 -19.99163 -19.18408 -18.73682 -17.56198 -17.22078 -16.77738 -16.45355 -16.33894 -15.71035 -15.63819 -15.35923 -14.94114 -14.90621 -14.66310 -14.38649 -13.90306 -13.65293 -13.62864 -13.58177 -13.37588 -12.97992 -12.78890 -12.64884 -12.45573 -12.41301 -12.23202 -11.96261 -11.87417 -11.72937 -11.51894 -11.35888 -11.25506 -11.07613 -10.94604 -10.78783 -10.66188 -10.12244 -8.84837 -7.81147 -5.15254 -0.49132 0.24805 0.59094 1.34447 1.46348 1.47829 1.56314 1.79600 2.08982 2.51430 2.99858 3.37067 3.49189 3.57518 3.67153 3.68641 3.77377 3.82146 3.89204 4.16940 4.39946 4.48682 4.53263 4.54501 4.64931 4.73810 4.80272 4.89789 4.94152 5.05335 5.13444 5.16564 5.22121 5.32531 5.39958 5.47504 5.51712 5.61446 5.80271 5.86656 6.19492 6.22187 6.64105 6.85599 7.12839 7.80603 8.47283 9.29163 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013757 B = 0.002735 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2034.839654 B =10236.597242 C =11563.908478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C -0.070 4.070 3 Si 0.974 3.026 4 H -0.287 1.287 5 H -0.297 1.297 6 H -0.269 1.269 7 C -0.236 4.236 8 H 0.081 0.919 9 N -0.634 5.634 10 C 0.197 3.803 11 C -0.106 4.106 12 H 0.073 0.927 13 C -0.094 4.094 14 C -0.119 4.119 15 C 0.154 3.846 16 H 0.105 0.895 17 N -0.697 5.697 18 C 0.612 3.388 19 O -0.532 6.532 20 C -0.073 4.073 21 C -0.127 4.127 22 C 0.046 3.954 23 Cl 0.045 6.955 24 N -0.347 5.347 25 O 0.135 5.865 26 C -0.100 4.100 27 C -0.093 4.093 28 H 0.070 0.930 29 C 0.136 3.864 30 H 0.244 0.756 31 H 0.006 0.994 32 H 0.000 1.000 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.412 0.588 38 H 0.216 0.784 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.043 0.957 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.915 -21.528 9.055 23.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.601 5.601 2 C -0.263 4.263 3 Si 0.803 3.197 4 H -0.214 1.214 5 H -0.224 1.224 6 H -0.194 1.194 7 C -0.365 4.365 8 H 0.099 0.901 9 N -0.361 5.361 10 C 0.073 3.927 11 C -0.125 4.125 12 H 0.091 0.909 13 C -0.133 4.133 14 C -0.157 4.157 15 C 0.051 3.949 16 H 0.123 0.877 17 N -0.349 5.349 18 C 0.395 3.605 19 O -0.410 6.410 20 C -0.139 4.139 21 C -0.150 4.150 22 C -0.137 4.137 23 Cl 0.073 6.927 24 N -0.048 5.048 25 O 0.058 5.942 26 C -0.138 4.138 27 C -0.112 4.112 28 H 0.088 0.912 29 C 0.012 3.988 30 H 0.053 0.947 31 H 0.024 0.976 32 H 0.018 0.982 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.107 0.893 37 H 0.250 0.750 38 H 0.233 0.767 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.062 0.938 42 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -2.788 -21.120 9.587 23.361 hybrid contribution -0.011 1.391 0.253 1.414 sum -2.799 -19.729 9.840 22.224 Atomic orbital electron populations 1.70193 1.06214 1.24946 1.58779 1.25606 0.96578 1.00872 1.03227 0.85135 0.77703 0.79493 0.77375 1.21446 1.22370 1.19360 1.19466 0.90955 0.83954 1.42145 0.90078 1.45457 1.02330 1.01105 1.87166 1.20523 0.83454 0.91753 0.97000 1.21987 0.96073 0.94790 0.99631 0.90870 1.21188 0.97013 0.95611 0.99441 1.21885 0.97150 0.93826 1.02854 1.21238 0.95107 1.01426 0.77178 0.87733 1.46219 1.52298 1.28522 1.07815 1.16381 0.79727 0.82609 0.81757 1.90877 1.42723 1.33583 1.73798 1.24290 1.01291 0.92784 0.95542 1.23025 1.01960 1.02873 0.87097 1.24298 1.02029 0.95391 0.91954 1.98435 1.92048 1.85514 1.16672 1.73897 1.17977 1.18089 0.94818 1.85088 1.55419 1.42059 1.11592 1.21630 0.97301 0.92476 1.02423 1.21966 0.95111 0.94925 0.99207 0.91187 1.21515 0.95311 0.84332 0.97689 0.94690 0.97588 0.98204 0.92849 0.92298 0.91595 0.89324 0.75013 0.76670 0.89145 0.88473 0.93835 0.95115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.79 10.36 21.65 0.22 -57.57 16 2 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 3 Si 0.97 46.15 29.55 68.60 2.03 48.17 16 4 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 6 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.24 -13.17 10.30 84.03 0.87 -12.30 16 8 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 9 N -0.63 -31.80 3.45 -693.02 -2.39 -34.19 16 10 C 0.20 9.49 5.07 85.82 0.43 9.93 16 11 C -0.11 -3.48 2.31 -10.62 -0.02 -3.51 16 12 H 0.07 2.31 7.92 -2.39 -0.02 2.29 16 13 C -0.09 -2.57 5.57 30.37 0.17 -2.40 16 14 C -0.12 -2.41 5.42 30.72 0.17 -2.24 16 15 C 0.15 2.77 2.71 45.11 0.12 2.90 16 16 H 0.10 1.74 7.52 -2.38 -0.02 1.73 16 17 N -0.70 -12.97 4.65 -445.17 -2.07 -15.04 16 18 C 0.61 12.31 7.76 86.69 0.67 12.98 16 19 O -0.53 -12.84 16.54 -4.00 -0.07 -12.90 16 20 C -0.07 -1.39 7.29 24.38 0.18 -1.21 16 21 C -0.13 -2.09 10.96 22.71 0.25 -1.84 16 22 C 0.05 0.87 7.97 85.71 0.68 1.55 16 23 Cl 0.05 0.71 29.33 -2.72 -0.08 0.63 16 24 N -0.35 -7.91 12.05 -51.02 -0.61 -8.53 16 25 O 0.14 2.89 11.04 65.84 0.73 3.61 16 26 C -0.10 -1.87 5.38 30.41 0.16 -1.71 16 27 C -0.09 -2.62 2.41 -10.32 -0.02 -2.65 16 28 H 0.07 2.02 6.20 -2.38 -0.01 2.00 16 29 C 0.14 5.04 6.90 85.99 0.59 5.63 16 30 H 0.24 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.01 0.32 7.30 -2.39 -0.02 0.31 16 32 H 0.00 -0.02 7.60 -2.39 -0.02 -0.03 16 33 H 0.05 1.52 7.89 -2.39 -0.02 1.50 16 34 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.38 8.13 -2.38 -0.02 1.36 16 36 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.41 7.56 6.62 -92.71 -0.61 6.94 16 38 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 39 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.10 1.66 7.98 -2.38 -0.02 1.64 16 41 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -69.27 355.91 2.92 -66.35 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.45 Total: 7.89 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: 4.71 Total: 1.58 kcal Atomic # 7 Polarization: -110.47 SS G_CDS: -4.85 Total: -115.33 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.66 Total: -9.29 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -0.08 Total: 0.63 kcal Total: -69.27 2.92 -66.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211007.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.431 kcal (2) G-P(sol) polarization free energy of solvation -69.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds