Wall clock time and date at job start Tue Mar 31 2020 22:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48495 * 109.47146 * 274.98238 * 3 2 1 5 5 H 1.48503 * 109.47351 * 34.98763 * 3 2 1 6 6 H 1.48506 * 109.46994 * 154.98587 * 3 2 1 7 7 C 1.38809 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00132 * 186.81722 * 7 2 1 9 9 N 1.36941 * 119.99947 * 6.81203 * 7 2 1 10 10 C 1.47169 * 125.65074 * 353.86969 * 9 7 2 11 11 C 1.55340 * 106.96406 * 180.99838 * 10 9 7 12 12 H 1.09001 * 112.36263 * 215.22739 * 11 10 9 13 13 C 1.51893 * 107.01304 * 92.57505 * 11 10 9 14 14 C 1.52586 * 111.26301 * 197.41960 * 13 11 10 15 15 C 1.53331 * 108.43955 * 61.88849 * 14 13 11 16 16 H 1.09002 * 109.73092 * 55.51313 * 15 14 13 17 17 N 1.46502 * 109.73504 * 176.15816 * 15 14 13 18 18 C 1.34765 * 120.00314 * 275.00277 * 17 15 14 19 19 O 1.21583 * 120.00227 * 0.02562 * 18 17 15 20 20 C 1.47526 * 120.00247 * 180.02562 * 18 17 15 21 21 C 1.36782 * 126.93105 * 179.70972 * 20 18 17 22 22 C 1.41408 * 103.83692 * 179.87049 * 21 20 18 23 23 Cl 1.73601 * 126.72310 * 180.13512 * 22 21 20 24 24 N 1.30228 * 106.54919 * 0.39733 * 22 21 20 25 25 O 1.20882 * 111.95966 * 359.73969 * 24 22 21 26 26 C 1.52820 * 108.09788 * 295.86135 * 15 14 13 27 27 C 1.50733 * 111.74751 * 58.91278 * 26 15 14 28 28 H 1.08994 * 109.27163 * 186.94526 * 27 26 15 29 29 C 1.47285 * 125.95305 * 174.61239 * 9 7 2 30 30 H 0.97000 * 119.99234 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.95954 * 61.61605 * 10 9 7 32 32 H 1.08998 * 109.96164 * 300.37632 * 10 9 7 33 33 H 1.09003 * 109.43587 * 76.70099 * 13 11 10 34 34 H 1.08998 * 108.67204 * 317.63571 * 13 11 10 35 35 H 1.09005 * 109.67294 * 302.14572 * 14 13 11 36 36 H 1.08993 * 109.68050 * 181.64239 * 14 13 11 37 37 H 0.96999 * 119.99540 * 95.00470 * 17 15 14 38 38 H 1.07998 * 128.08293 * 359.96655 * 21 20 18 39 39 H 1.09002 * 109.02820 * 179.50122 * 26 15 14 40 40 H 1.09000 * 109.02708 * 298.40669 * 26 15 14 41 41 H 1.09002 * 110.85059 * 84.74184 * 29 9 7 42 42 H 1.09002 * 109.92926 * 322.21015 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0846 -1.2055 0.1105 9 7 1.3327 -2.3838 -0.1417 10 6 -0.1308 -2.5349 -0.1736 11 6 -0.4266 -4.0526 -0.3231 12 1 -1.3070 -4.2450 -0.9363 13 6 -0.5924 -4.6133 1.0788 14 6 -0.4604 -6.1334 1.0859 15 6 0.9483 -6.5002 0.6044 16 1 1.6914 -5.9964 1.2226 17 7 1.1374 -7.9506 0.6870 18 6 1.5304 -8.5139 1.8464 19 8 1.7277 -7.8186 2.8241 20 6 1.7214 -9.9744 1.9295 21 6 2.1196 -10.6902 3.0250 22 6 2.1369 -12.0279 2.5668 23 17 2.5595 -13.4360 3.4901 24 7 1.7792 -11.9960 1.3150 25 8 1.5443 -10.8709 0.9406 26 6 1.0881 -6.0423 -0.8469 27 6 0.8674 -4.5579 -0.9879 28 1 0.8534 -4.2951 -2.0456 29 6 1.9408 -3.7190 -0.2719 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5427 -1.9900 -1.0230 32 1 -0.5638 -2.1610 0.7541 33 1 -1.5733 -4.3374 1.4661 34 1 0.1779 -4.1843 1.7195 35 1 -1.2022 -6.5693 0.4166 36 1 -0.6123 -6.5102 2.0973 37 1 0.9796 -8.5054 -0.0928 38 1 2.3624 -10.3204 4.0101 39 1 2.0889 -6.2880 -1.2023 40 1 0.3551 -6.5690 -1.4579 41 1 2.1644 -4.1407 0.7080 42 1 2.8449 -3.6580 -0.8777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000980211013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:30 Heat of formation + Delta-G solvation = 44.580345 kcal Electronic energy + Delta-G solvation = -26968.335376 eV Core-core repulsion = 22978.234809 eV Total energy + Delta-G solvation = -3990.100567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -45.68495 -40.40064 -39.02522 -37.64906 -35.82638 -34.27348 -33.65542 -32.58255 -31.64820 -30.84037 -28.99445 -26.28821 -25.26880 -24.18436 -24.14124 -22.25339 -21.87148 -21.07196 -19.93122 -19.53110 -18.46943 -18.02101 -16.97689 -16.66403 -16.60810 -15.68624 -15.27340 -14.89525 -14.72374 -14.29114 -14.09731 -13.89340 -13.70389 -13.53921 -13.26332 -12.93673 -12.64234 -12.46718 -12.14045 -11.78443 -11.68785 -11.57008 -11.19339 -11.03637 -10.99279 -10.69764 -10.67659 -10.59834 -10.55725 -10.32915 -9.98792 -9.91814 -9.69923 -9.57026 -9.49070 -9.17384 -8.55482 -6.78611 -5.70273 -3.02045 0.23037 0.90456 1.26997 2.05073 2.60872 2.82630 3.41523 3.46947 3.48756 3.69632 4.16063 4.40401 4.48647 4.52083 4.78812 4.85474 5.14935 5.21530 5.32832 5.39466 5.51365 5.56886 5.65099 5.74285 5.79259 5.85643 5.99859 6.11925 6.16757 6.31205 6.34182 6.39680 6.52533 6.62039 6.78543 6.90345 6.99440 7.02317 7.34606 7.59473 7.65386 7.68899 7.85404 8.28212 9.24319 9.85168 10.52422 11.41818 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.002062 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.738560 B =13577.137146 C =13872.560811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.226 4.226 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.181 3.819 11 C -0.113 4.113 12 H 0.071 0.929 13 C -0.104 4.104 14 C -0.125 4.125 15 C 0.142 3.858 16 H 0.101 0.899 17 N -0.704 5.704 18 C 0.603 3.397 19 O -0.500 6.500 20 C -0.064 4.064 21 C -0.138 4.138 22 C 0.051 3.949 23 Cl 0.033 6.967 24 N -0.327 5.327 25 O 0.137 5.863 26 C -0.107 4.107 27 C -0.092 4.092 28 H 0.074 0.926 29 C 0.139 3.861 30 H 0.251 0.749 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.405 0.595 38 H 0.195 0.805 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.019 0.981 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.793 -24.651 2.317 24.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.355 4.355 8 H 0.095 0.905 9 N -0.331 5.331 10 C 0.057 3.943 11 C -0.132 4.132 12 H 0.090 0.910 13 C -0.142 4.142 14 C -0.163 4.163 15 C 0.039 3.961 16 H 0.119 0.881 17 N -0.354 5.354 18 C 0.384 3.616 19 O -0.374 6.374 20 C -0.130 4.130 21 C -0.161 4.161 22 C -0.132 4.132 23 Cl 0.061 6.939 24 N -0.028 5.028 25 O 0.060 5.940 26 C -0.146 4.146 27 C -0.112 4.112 28 H 0.093 0.907 29 C 0.013 3.987 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.240 0.760 38 H 0.212 0.788 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.037 0.963 42 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.789 -24.956 2.212 25.067 hybrid contribution 0.547 0.737 0.436 1.016 sum 1.336 -24.219 2.648 24.400 Atomic orbital electron populations 1.69973 1.04874 1.24957 1.56974 1.24810 0.95697 0.97618 1.02319 0.86134 0.78708 0.83722 0.77444 1.21692 1.21824 1.20665 1.19053 0.91045 0.82565 1.42811 0.90513 1.44447 1.01700 1.00860 1.86122 1.21477 0.84498 0.87568 1.00806 1.22250 0.96305 0.99555 0.95140 0.91033 1.21257 1.02283 0.92836 0.97868 1.21912 0.95484 0.97845 1.01070 1.21305 0.98915 0.77217 0.98650 0.88147 1.46057 1.67229 1.09969 1.12183 1.16429 0.78341 0.82305 0.84482 1.90941 1.50691 1.59939 1.35878 1.24390 1.06285 0.93479 0.88876 1.22774 1.02175 0.89316 1.01874 1.24081 1.06438 0.91361 0.91306 1.98434 1.91050 1.35679 1.68715 1.73867 1.15228 1.00439 1.13235 1.85057 1.63519 1.10385 1.35089 1.21149 1.02064 0.97159 0.94221 1.21366 0.97308 0.91909 1.00658 0.90711 1.21405 0.94327 0.86678 0.96290 0.93816 0.93944 0.93746 0.92022 0.91180 0.91924 0.91929 0.75998 0.78754 0.91480 0.91613 0.96332 0.94574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.87 10.37 55.49 0.58 -26.29 16 2 C -0.01 -0.23 5.48 -17.43 -0.10 -0.33 16 3 Si 0.91 22.10 29.56 -169.99 -5.02 17.07 16 4 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.23 -6.27 10.28 -15.06 -0.15 -6.42 16 8 H 0.08 2.07 7.84 -52.48 -0.41 1.65 16 9 N -0.61 -15.07 3.39 -170.05 -0.58 -15.65 16 10 C 0.18 4.24 4.68 -2.44 -0.01 4.22 16 11 C -0.11 -1.94 3.49 -89.42 -0.31 -2.25 16 12 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 13 C -0.10 -1.64 4.64 -27.51 -0.13 -1.77 16 14 C -0.12 -1.57 5.52 -26.77 -0.15 -1.71 16 15 C 0.14 1.69 2.28 -67.85 -0.16 1.54 16 16 H 0.10 1.46 6.27 -51.93 -0.33 1.14 16 17 N -0.70 -6.65 5.10 -54.78 -0.28 -6.93 16 18 C 0.60 6.57 7.79 -12.48 -0.10 6.47 16 19 O -0.50 -7.22 16.59 5.29 0.09 -7.13 16 20 C -0.06 -0.59 7.29 -36.32 -0.26 -0.86 16 21 C -0.14 -1.18 10.96 -38.90 -0.43 -1.61 16 22 C 0.05 0.46 7.97 -17.03 -0.14 0.32 16 23 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 24 N -0.33 -3.24 12.05 32.82 0.40 -2.85 16 25 O 0.14 1.22 11.04 15.54 0.17 1.39 16 26 C -0.11 -1.24 4.86 -27.96 -0.14 -1.37 16 27 C -0.09 -1.46 2.86 -90.76 -0.26 -1.72 16 28 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 29 C 0.14 2.75 6.15 -3.14 -0.02 2.73 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.04 1.11 7.37 -51.93 -0.38 0.73 16 32 H 0.04 1.16 7.16 -51.93 -0.37 0.79 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 1.29 7.14 -51.93 -0.37 0.92 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.41 2.71 8.43 -40.82 -0.34 2.36 16 38 H 0.20 1.33 8.06 -52.49 -0.42 0.91 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.02 0.37 6.15 -51.93 -0.32 0.06 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 354.88 15.07 5.35 5.35 Total: -1.00 -31.26 354.88 -8.63 -39.89 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: -5.47 Total: -0.82 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.34 Total: -2.76 kcal Atomic # 7 Polarization: -51.83 SS G_CDS: 0.11 Total: -51.72 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: 0.26 Total: -5.74 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.26 -8.63 -39.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.470 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds