Wall clock time and date at job start Tue Mar 31 2020 22:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99974 * 2 1 4 4 H 1.48495 * 109.47146 * 274.98238 * 3 2 1 5 5 H 1.48503 * 109.47351 * 34.98763 * 3 2 1 6 6 H 1.48506 * 109.46994 * 154.98587 * 3 2 1 7 7 C 1.38809 * 119.99887 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00132 * 186.81722 * 7 2 1 9 9 N 1.36941 * 119.99947 * 6.81203 * 7 2 1 10 10 C 1.47169 * 125.65074 * 353.86969 * 9 7 2 11 11 C 1.55340 * 106.96406 * 180.99838 * 10 9 7 12 12 H 1.09001 * 112.36263 * 215.22739 * 11 10 9 13 13 C 1.51893 * 107.01304 * 92.57505 * 11 10 9 14 14 C 1.52586 * 111.26301 * 197.41960 * 13 11 10 15 15 C 1.53331 * 108.43955 * 61.88849 * 14 13 11 16 16 H 1.09002 * 109.73092 * 55.51313 * 15 14 13 17 17 N 1.46502 * 109.73504 * 176.15816 * 15 14 13 18 18 C 1.34765 * 120.00314 * 275.00277 * 17 15 14 19 19 O 1.21583 * 120.00227 * 0.02562 * 18 17 15 20 20 C 1.47526 * 120.00247 * 180.02562 * 18 17 15 21 21 C 1.36782 * 126.93105 * 179.70972 * 20 18 17 22 22 C 1.41408 * 103.83692 * 179.87049 * 21 20 18 23 23 Cl 1.73601 * 126.72310 * 180.13512 * 22 21 20 24 24 N 1.30228 * 106.54919 * 0.39733 * 22 21 20 25 25 O 1.20882 * 111.95966 * 359.73969 * 24 22 21 26 26 C 1.52820 * 108.09788 * 295.86135 * 15 14 13 27 27 C 1.50733 * 111.74751 * 58.91278 * 26 15 14 28 28 H 1.08994 * 109.27163 * 186.94526 * 27 26 15 29 29 C 1.47285 * 125.95305 * 174.61239 * 9 7 2 30 30 H 0.97000 * 119.99234 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.95954 * 61.61605 * 10 9 7 32 32 H 1.08998 * 109.96164 * 300.37632 * 10 9 7 33 33 H 1.09003 * 109.43587 * 76.70099 * 13 11 10 34 34 H 1.08998 * 108.67204 * 317.63571 * 13 11 10 35 35 H 1.09005 * 109.67294 * 302.14572 * 14 13 11 36 36 H 1.08993 * 109.68050 * 181.64239 * 14 13 11 37 37 H 0.96999 * 119.99540 * 95.00470 * 17 15 14 38 38 H 1.07998 * 128.08293 * 359.96655 * 21 20 18 39 39 H 1.09002 * 109.02820 * 179.50122 * 26 15 14 40 40 H 1.09000 * 109.02708 * 298.40669 * 26 15 14 41 41 H 1.09002 * 110.85059 * 84.74184 * 29 9 7 42 42 H 1.09002 * 109.92926 * 322.21015 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3924 2.1072 -1.3947 5 1 1.5044 2.6200 0.8028 6 1 3.5965 1.4120 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0846 -1.2055 0.1105 9 7 1.3327 -2.3838 -0.1417 10 6 -0.1308 -2.5349 -0.1736 11 6 -0.4266 -4.0526 -0.3231 12 1 -1.3070 -4.2450 -0.9363 13 6 -0.5924 -4.6133 1.0788 14 6 -0.4604 -6.1334 1.0859 15 6 0.9483 -6.5002 0.6044 16 1 1.6914 -5.9964 1.2226 17 7 1.1374 -7.9506 0.6870 18 6 1.5304 -8.5139 1.8464 19 8 1.7277 -7.8186 2.8241 20 6 1.7214 -9.9744 1.9295 21 6 2.1196 -10.6902 3.0250 22 6 2.1369 -12.0279 2.5668 23 17 2.5595 -13.4360 3.4901 24 7 1.7792 -11.9960 1.3150 25 8 1.5443 -10.8709 0.9406 26 6 1.0881 -6.0423 -0.8469 27 6 0.8674 -4.5579 -0.9879 28 1 0.8534 -4.2951 -2.0456 29 6 1.9408 -3.7190 -0.2719 30 1 -0.4849 0.8401 -0.0004 31 1 -0.5427 -1.9900 -1.0230 32 1 -0.5638 -2.1610 0.7541 33 1 -1.5733 -4.3374 1.4661 34 1 0.1779 -4.1843 1.7195 35 1 -1.2022 -6.5693 0.4166 36 1 -0.6123 -6.5102 2.0973 37 1 0.9796 -8.5054 -0.0928 38 1 2.3624 -10.3204 4.0101 39 1 2.0889 -6.2880 -1.2023 40 1 0.3551 -6.5690 -1.4579 41 1 2.1644 -4.1407 0.7080 42 1 2.8449 -3.6580 -0.8777 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000980211013.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:30 Heat of formation + Delta-G solvation = 24.398597 kcal Electronic energy + Delta-G solvation = -26969.210522 eV Core-core repulsion = 22978.234809 eV Total energy + Delta-G solvation = -3990.975713 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.38903 -41.46213 -40.25705 -38.27080 -37.11790 -35.22424 -34.83181 -33.65509 -33.05959 -32.15006 -30.56297 -27.73891 -26.91643 -25.30192 -24.84375 -23.57223 -22.95776 -22.05662 -21.56937 -20.44051 -19.30805 -19.17844 -18.69118 -17.74479 -17.43448 -16.76698 -16.60509 -16.21335 -15.87696 -15.59452 -15.10152 -15.05760 -14.90345 -14.88901 -14.04613 -14.01888 -13.88994 -13.69576 -13.62538 -13.20910 -13.14987 -12.85030 -12.71122 -12.45049 -12.24811 -12.17240 -12.11500 -11.79347 -11.75002 -11.64318 -11.25520 -11.17360 -11.06870 -11.01321 -10.86053 -10.65153 -10.14009 -8.83237 -7.84128 -5.17461 -0.49305 0.26534 0.58331 1.27799 1.45355 1.46964 1.55847 1.78789 2.04187 2.50558 2.99835 3.33489 3.48543 3.65779 3.68812 3.75085 3.78596 3.81920 4.04759 4.17994 4.25137 4.39589 4.54167 4.56016 4.60874 4.66382 4.77469 4.80331 4.96800 5.05981 5.14596 5.19205 5.28751 5.34476 5.41031 5.47741 5.53372 5.60399 5.79177 5.85142 6.21956 6.23493 6.65928 6.91706 7.13317 7.81907 8.47422 9.26460 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030304 B = 0.002062 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.738560 B =13577.137146 C =13872.560811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.269 1.269 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.628 5.628 10 C 0.188 3.812 11 C -0.097 4.097 12 H 0.097 0.903 13 C -0.097 4.097 14 C -0.114 4.114 15 C 0.148 3.852 16 H 0.070 0.930 17 N -0.687 5.687 18 C 0.608 3.392 19 O -0.540 6.540 20 C -0.066 4.066 21 C -0.132 4.132 22 C 0.046 3.954 23 Cl 0.044 6.956 24 N -0.341 5.341 25 O 0.148 5.852 26 C -0.098 4.098 27 C -0.076 4.076 28 H 0.076 0.924 29 C 0.132 3.868 30 H 0.246 0.754 31 H 0.005 0.995 32 H 0.003 0.997 33 H 0.061 0.939 34 H 0.032 0.968 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.423 0.577 38 H 0.209 0.791 39 H 0.085 0.915 40 H 0.104 0.896 41 H 0.019 0.981 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -27.287 1.324 27.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.260 4.260 3 Si 0.804 3.196 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.194 1.194 7 C -0.370 4.370 8 H 0.096 0.904 9 N -0.354 5.354 10 C 0.063 3.937 11 C -0.116 4.116 12 H 0.116 0.884 13 C -0.136 4.136 14 C -0.152 4.152 15 C 0.044 3.956 16 H 0.089 0.911 17 N -0.338 5.338 18 C 0.391 3.609 19 O -0.417 6.417 20 C -0.132 4.132 21 C -0.155 4.155 22 C -0.136 4.136 23 Cl 0.072 6.928 24 N -0.040 5.040 25 O 0.069 5.931 26 C -0.136 4.136 27 C -0.096 4.096 28 H 0.094 0.906 29 C 0.007 3.993 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.021 0.979 33 H 0.080 0.920 34 H 0.051 0.949 35 H 0.111 0.889 36 H 0.076 0.924 37 H 0.262 0.738 38 H 0.226 0.774 39 H 0.103 0.897 40 H 0.122 0.878 41 H 0.036 0.964 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 1.134 -27.662 1.191 27.710 hybrid contribution 0.481 1.529 0.795 1.789 sum 1.615 -26.133 1.986 26.258 Atomic orbital electron populations 1.70201 1.06235 1.25125 1.58264 1.25644 0.96610 1.00944 1.02841 0.85099 0.77801 0.79400 0.77301 1.21297 1.22251 1.19413 1.19436 0.91467 0.84099 1.41965 0.90369 1.44782 1.02667 1.02085 1.85865 1.21258 0.83661 0.91761 0.97062 1.22152 0.98138 0.94657 0.96674 0.88443 1.21116 1.01014 0.95321 0.96100 1.21810 0.96746 0.94905 1.01757 1.21025 0.97640 0.78376 0.98523 0.91142 1.45783 1.66442 1.09033 1.12558 1.16486 0.77570 0.82685 0.84121 1.90936 1.52470 1.61029 1.37291 1.24026 1.07184 0.92717 0.89302 1.23002 1.01106 0.89072 1.02319 1.24210 1.06299 0.91957 0.91183 1.98441 1.90914 1.35076 1.68361 1.73843 1.15660 1.00758 1.13776 1.85048 1.63281 1.10021 1.34723 1.21077 1.04474 0.93779 0.94302 1.21266 0.94285 0.94321 0.99710 0.90597 1.21627 0.95671 0.85133 0.96830 0.94500 0.97720 0.97881 0.92012 0.94866 0.88925 0.92385 0.73839 0.77445 0.89675 0.87784 0.96374 0.94398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.98 10.37 21.65 0.22 -57.75 16 2 C -0.07 -3.91 5.48 84.86 0.47 -3.45 16 3 Si 0.98 46.58 29.56 68.60 2.03 48.61 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.24 -13.73 10.28 84.03 0.86 -12.86 16 8 H 0.08 4.30 7.84 -2.91 -0.02 4.28 16 9 N -0.63 -32.35 3.39 -691.93 -2.35 -34.70 16 10 C 0.19 9.17 4.68 87.06 0.41 9.57 16 11 C -0.10 -3.25 3.49 -10.02 -0.03 -3.29 16 12 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 13 C -0.10 -3.02 4.64 30.09 0.14 -2.88 16 14 C -0.11 -2.58 5.52 30.57 0.17 -2.41 16 15 C 0.15 3.15 2.28 45.04 0.10 3.25 16 16 H 0.07 1.99 6.27 -2.39 -0.01 1.98 16 17 N -0.69 -10.77 5.10 -445.49 -2.27 -13.04 16 18 C 0.61 12.00 7.79 86.69 0.68 12.68 16 19 O -0.54 -15.11 16.59 -3.98 -0.07 -15.18 16 20 C -0.07 -1.07 7.29 24.38 0.18 -0.89 16 21 C -0.13 -1.99 10.96 22.71 0.25 -1.74 16 22 C 0.05 0.73 7.97 85.71 0.68 1.41 16 23 Cl 0.04 0.59 29.33 -2.72 -0.08 0.51 16 24 N -0.34 -5.99 12.05 -51.03 -0.61 -6.61 16 25 O 0.15 2.24 11.04 65.81 0.73 2.97 16 26 C -0.10 -1.87 4.86 29.80 0.14 -1.72 16 27 C -0.08 -2.25 2.86 -10.89 -0.03 -2.28 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 C 0.13 5.23 6.15 86.53 0.53 5.76 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.00 0.25 7.37 -2.39 -0.02 0.24 16 32 H 0.00 0.17 7.16 -2.39 -0.02 0.15 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.03 1.26 7.14 -2.39 -0.02 1.25 16 35 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.42 3.76 8.43 -92.71 -0.78 2.98 16 38 H 0.21 2.47 8.06 -2.91 -0.02 2.45 16 39 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.02 0.74 6.15 -2.39 -0.01 0.72 16 42 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -72.21 354.88 2.43 -69.78 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: 0.29 Total: 4.25 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 4.54 Total: 1.16 kcal Atomic # 7 Polarization: -107.09 SS G_CDS: -5.01 Total: -112.10 kcal Atomic # 8 Polarization: -12.87 SS G_CDS: 0.66 Total: -12.21 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Atomic # 17 Polarization: 0.59 SS G_CDS: -0.08 Total: 0.51 kcal Total: -72.21 2.43 -69.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000980211013.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.182 kcal (2) G-P(sol) polarization free energy of solvation -72.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds