Wall clock time and date at job start Tue Mar 31 2020 22:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06485 * 2 1 4 4 N 1.47200 * 106.40470 * 217.90227 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29542 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47206 * 106.59316 * 31.56290 * 4 3 2 14 14 C 1.54032 * 106.26666 * 328.37046 * 13 4 3 15 15 C 1.52994 * 112.77347 * 141.67274 * 14 13 4 16 16 C 1.54319 * 109.25342 * 267.01388 * 14 13 4 17 17 N 1.48114 * 104.71151 * 88.38048 * 16 14 13 18 18 C 1.34775 * 127.84317 * 219.77963 * 17 16 14 19 19 O 1.21582 * 120.00144 * 179.97438 * 18 17 16 20 20 C 1.47523 * 120.00091 * 0.02562 * 18 17 16 21 21 C 1.36780 * 126.92607 * 179.71316 * 20 18 17 22 22 C 1.41414 * 103.83386 * 179.87551 * 21 20 18 23 23 Cl 1.73605 * 126.72422 * 180.13305 * 22 21 20 24 24 N 1.30227 * 106.55074 * 0.38613 * 22 21 20 25 25 O 1.20878 * 111.95776 * 359.74856 * 24 22 21 26 26 C 1.48116 * 104.31019 * 39.78297 * 17 16 14 27 27 H 1.09008 * 109.47132 * 58.97907 * 1 2 3 28 28 H 1.09000 * 109.47484 * 178.98534 * 1 2 3 29 29 H 1.09001 * 109.46577 * 298.98459 * 1 2 3 30 30 H 1.09008 * 110.06527 * 98.67353 * 3 2 1 31 31 H 1.09000 * 110.07683 * 337.14461 * 3 2 1 32 32 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 33 33 H 1.09005 * 110.06738 * 87.68752 * 13 4 3 34 34 H 1.09000 * 110.06826 * 209.20691 * 13 4 3 35 35 H 1.08997 * 109.47368 * 301.38776 * 15 14 13 36 36 H 1.09006 * 109.46616 * 61.38295 * 15 14 13 37 37 H 1.08997 * 109.47115 * 181.37965 * 15 14 13 38 38 H 1.09001 * 110.38896 * 329.57147 * 16 14 13 39 39 H 1.09007 * 110.48496 * 207.23535 * 16 14 13 40 40 H 1.07997 * 128.08336 * 359.97184 * 21 20 18 41 41 H 1.08999 * 110.38050 * 201.41249 * 26 17 16 42 42 H 1.08993 * 110.38752 * 79.03362 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4264 2.1542 -0.7370 6 1 5.3214 1.8907 -1.2812 7 6 4.4215 3.2655 0.0945 8 7 3.2904 3.6945 0.6132 9 14 6.0204 4.1525 0.4776 10 1 6.2496 5.2176 -0.5315 11 1 5.9372 4.7611 1.8296 12 1 7.1453 3.1838 0.4391 13 6 3.0306 0.3833 -1.9064 14 6 2.1377 -0.6869 -1.2506 15 6 1.0607 -1.2208 -2.1971 16 6 3.0265 -1.8158 -0.6875 17 7 3.3640 -1.3787 0.6868 18 6 4.5443 -1.4990 1.3263 19 8 4.6643 -1.0863 2.4637 20 6 5.6909 -2.1303 0.6459 21 6 6.9461 -2.3196 1.1552 22 6 7.6436 -2.9613 0.1057 23 17 9.3009 -3.4781 0.1243 24 7 6.8008 -3.0838 -0.8795 25 8 5.7144 -2.6312 -0.6037 26 6 2.1099 -0.7795 1.1988 27 1 -0.3634 0.5296 -0.8807 28 1 -0.3634 -1.0275 -0.0182 29 1 -0.3632 0.4980 0.8990 30 1 2.3912 1.7136 1.0122 31 1 1.3739 2.1261 -0.3976 32 1 3.2870 4.4714 1.1940 33 1 2.5121 0.8417 -2.7486 34 1 3.9663 -0.0642 -2.2415 35 1 0.4330 -0.3963 -2.5352 36 1 1.5350 -1.6929 -3.0576 37 1 0.4472 -1.9535 -1.6730 38 1 3.9316 -1.9207 -1.2857 39 1 2.4773 -2.7571 -0.6625 40 1 7.3174 -2.0448 2.1314 41 1 2.3230 -0.1016 2.0254 42 1 1.4178 -1.5597 1.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982752365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:36 Heat of formation + Delta-G solvation = 66.874458 kcal Electronic energy + Delta-G solvation = -29050.866036 eV Core-core repulsion = 25061.732215 eV Total energy + Delta-G solvation = -3989.133821 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.22944 -40.47590 -38.45829 -37.29570 -34.88790 -33.81985 -33.12080 -32.22851 -31.60682 -30.73322 -27.15195 -26.13948 -25.84673 -24.98815 -23.68968 -23.61404 -22.15507 -20.50761 -20.02153 -18.21003 -18.01821 -17.65038 -16.73042 -16.35474 -15.76542 -15.64524 -14.95540 -14.60206 -14.08161 -13.97869 -13.79881 -13.54846 -13.41840 -13.20735 -12.90998 -12.84257 -12.59711 -12.24994 -12.18169 -11.78934 -11.59134 -11.43912 -11.42284 -11.23435 -10.84786 -10.81603 -10.70465 -10.19458 -10.15054 -10.11371 -10.05218 -9.87318 -9.83435 -9.75318 -9.58585 -8.71679 -8.40495 -6.79857 -5.77554 -3.09956 0.70862 1.26163 1.70053 2.46411 3.11429 3.21606 3.39384 3.45983 3.47247 4.07747 4.48494 4.58645 4.61555 4.73215 4.90819 4.96146 5.14163 5.38570 5.41175 5.52630 5.54625 5.57828 5.67749 5.71693 5.84202 5.91946 5.98184 6.05052 6.08163 6.23330 6.29089 6.34642 6.40555 6.51521 6.63887 6.79856 6.86325 7.36489 7.55571 7.58719 7.73145 7.74866 8.14359 8.25519 9.16723 9.79091 10.50517 11.36407 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.005294 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.372414 B = 5288.119206 C = 6996.588409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.098 4.098 3 C 0.181 3.819 4 N -0.589 5.589 5 C -0.226 4.226 6 H 0.071 0.929 7 C 0.000 4.000 8 N -0.913 5.913 9 Si 0.904 3.096 10 H -0.288 1.288 11 H -0.289 1.289 12 H -0.281 1.281 13 C 0.144 3.856 14 C -0.085 4.085 15 C -0.124 4.124 16 C 0.110 3.890 17 N -0.589 5.589 18 C 0.628 3.372 19 O -0.510 6.510 20 C -0.044 4.044 21 C -0.146 4.146 22 C 0.054 3.946 23 Cl 0.027 6.973 24 N -0.333 5.333 25 O 0.136 5.864 26 C 0.126 3.874 27 H 0.061 0.939 28 H 0.051 0.949 29 H 0.056 0.944 30 H 0.076 0.924 31 H 0.024 0.976 32 H 0.253 0.747 33 H 0.020 0.980 34 H 0.040 0.960 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.193 0.807 41 H 0.088 0.912 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -15.242 -1.455 15.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C 0.055 3.945 4 N -0.313 5.313 5 C -0.355 4.355 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.559 5.559 9 Si 0.735 3.265 10 H -0.215 1.215 11 H -0.215 1.215 12 H -0.207 1.207 13 C 0.017 3.983 14 C -0.087 4.087 15 C -0.182 4.182 16 C -0.013 4.013 17 N -0.320 5.320 18 C 0.413 3.587 19 O -0.386 6.386 20 C -0.109 4.109 21 C -0.169 4.169 22 C -0.129 4.129 23 Cl 0.055 6.945 24 N -0.035 5.035 25 O 0.061 5.939 26 C 0.005 3.995 27 H 0.080 0.920 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.210 0.790 41 H 0.106 0.894 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.515 -15.375 -1.865 15.496 hybrid contribution 1.367 0.818 0.815 1.789 sum 0.853 -14.557 -1.051 14.620 Atomic orbital electron populations 1.21589 0.93296 1.00863 1.02165 1.22599 0.94978 0.99741 0.92756 1.21215 0.87902 0.87949 0.97430 1.44309 1.16469 1.43030 1.27461 1.18863 0.88129 1.03997 1.24484 0.91145 1.24789 0.96856 0.97029 1.01045 1.69907 1.23731 1.26053 1.36255 0.86242 0.83074 0.79615 0.77599 1.21523 1.21473 1.20697 1.21403 0.95412 0.89611 0.91834 1.22362 0.95403 0.95170 0.95770 1.21623 0.97514 1.00784 0.98246 1.22701 0.99618 0.96798 0.82188 1.48418 1.10020 1.57607 1.15970 1.15786 0.79357 0.78907 0.84675 1.90878 1.81641 1.49125 1.16921 1.24270 0.98077 1.02713 0.85889 1.22676 0.91098 1.01199 1.01950 1.23975 0.91454 1.04678 0.92766 1.98409 1.08945 1.88988 1.98189 1.73813 0.92195 1.15357 1.22158 1.85125 1.25587 1.55016 1.28211 1.22495 0.82920 0.96405 0.97706 0.92015 0.93003 0.92465 0.90577 0.95827 0.93667 0.96219 0.94209 0.91826 0.92718 0.92523 0.89775 0.90973 0.78999 0.89387 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 7.54 37.16 0.28 -1.30 16 2 C -0.10 -1.61 1.08 -152.33 -0.16 -1.78 16 3 C 0.18 4.06 4.68 -3.27 -0.02 4.05 16 4 N -0.59 -14.28 3.38 -171.00 -0.58 -14.86 16 5 C -0.23 -6.23 10.28 -15.06 -0.15 -6.38 16 6 H 0.07 1.93 7.85 -52.48 -0.41 1.52 16 7 C 0.00 0.00 5.38 -17.43 -0.09 -0.09 16 8 N -0.91 -26.53 10.87 55.49 0.60 -25.93 16 9 Si 0.90 22.54 29.56 -169.99 -5.03 17.52 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.14 2.81 6.34 -3.12 -0.02 2.79 16 14 C -0.08 -1.28 1.08 -152.18 -0.16 -1.45 16 15 C -0.12 -1.42 7.59 37.15 0.28 -1.14 16 16 C 0.11 1.55 5.75 -2.46 -0.01 1.54 16 17 N -0.59 -9.90 3.31 -170.68 -0.57 -10.46 16 18 C 0.63 11.48 7.91 -12.48 -0.10 11.38 16 19 O -0.51 -10.73 17.18 5.29 0.09 -10.64 16 20 C -0.04 -0.70 7.11 -36.33 -0.26 -0.96 16 21 C -0.15 -2.11 10.96 -38.90 -0.43 -2.53 16 22 C 0.05 0.76 7.97 -17.02 -0.14 0.63 16 23 Cl 0.03 0.31 29.33 -51.86 -1.52 -1.21 16 24 N -0.33 -5.05 12.05 32.82 0.40 -4.66 16 25 O 0.14 2.07 8.50 15.54 0.13 2.20 16 26 C 0.13 2.05 6.05 -2.47 -0.01 2.03 16 27 H 0.06 0.81 7.20 -51.92 -0.37 0.43 16 28 H 0.05 0.55 7.21 -51.93 -0.37 0.17 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 1.98 6.03 -51.92 -0.31 1.67 16 31 H 0.02 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.02 0.40 7.93 -51.93 -0.41 -0.02 16 34 H 0.04 0.78 7.40 -51.93 -0.38 0.39 16 35 H 0.06 0.75 7.18 -51.93 -0.37 0.38 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.55 7.21 -51.93 -0.37 0.17 16 38 H 0.08 1.22 4.91 -51.93 -0.25 0.97 16 39 H 0.07 0.82 7.96 -51.93 -0.41 0.41 16 40 H 0.19 2.40 8.06 -52.49 -0.42 1.98 16 41 H 0.09 1.66 7.16 -51.93 -0.37 1.29 16 42 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 LS Contribution 351.80 15.07 5.30 5.30 Total: -1.00 -31.31 351.80 -7.45 -38.76 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -5.28 Total: -2.82 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -1.00 Total: 6.80 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.15 Total: -55.91 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: 0.22 Total: -8.44 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.52 kcal Atomic # 17 Polarization: 0.31 SS G_CDS: -1.52 Total: -1.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.31 -7.45 -38.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982752365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.637 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds