Wall clock time and date at job start Tue Mar 31 2020 22:40:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53757 * 112.06485 * 2 1 4 4 N 1.47200 * 106.40470 * 217.90227 * 3 2 1 5 5 C 1.36943 * 126.70374 * 211.29542 * 4 3 2 6 6 H 1.08003 * 119.99648 * 165.69720 * 5 4 3 7 7 C 1.38804 * 119.99839 * 345.69736 * 5 4 3 8 8 N 1.31622 * 120.00247 * 350.70109 * 7 5 4 9 9 Si 1.86810 * 119.99877 * 170.70063 * 7 5 4 10 10 H 1.48493 * 109.47005 * 90.00021 * 9 7 5 11 11 H 1.48501 * 109.47040 * 209.99959 * 9 7 5 12 12 H 1.48500 * 109.46752 * 329.99813 * 9 7 5 13 13 C 1.47206 * 106.59316 * 31.56290 * 4 3 2 14 14 C 1.54032 * 106.26666 * 328.37046 * 13 4 3 15 15 C 1.52994 * 112.77347 * 141.67274 * 14 13 4 16 16 C 1.54319 * 109.25342 * 267.01388 * 14 13 4 17 17 N 1.48114 * 104.71151 * 88.38048 * 16 14 13 18 18 C 1.34775 * 127.84317 * 219.77963 * 17 16 14 19 19 O 1.21582 * 120.00144 * 179.97438 * 18 17 16 20 20 C 1.47523 * 120.00091 * 0.02562 * 18 17 16 21 21 C 1.36780 * 126.92607 * 179.71316 * 20 18 17 22 22 C 1.41414 * 103.83386 * 179.87551 * 21 20 18 23 23 Cl 1.73605 * 126.72422 * 180.13305 * 22 21 20 24 24 N 1.30227 * 106.55074 * 0.38613 * 22 21 20 25 25 O 1.20878 * 111.95776 * 359.74856 * 24 22 21 26 26 C 1.48116 * 104.31019 * 39.78297 * 17 16 14 27 27 H 1.09008 * 109.47132 * 58.97907 * 1 2 3 28 28 H 1.09000 * 109.47484 * 178.98534 * 1 2 3 29 29 H 1.09001 * 109.46577 * 298.98459 * 1 2 3 30 30 H 1.09008 * 110.06527 * 98.67353 * 3 2 1 31 31 H 1.09000 * 110.07683 * 337.14461 * 3 2 1 32 32 H 0.97001 * 120.00021 * 180.02562 * 8 7 5 33 33 H 1.09005 * 110.06738 * 87.68752 * 13 4 3 34 34 H 1.09000 * 110.06826 * 209.20691 * 13 4 3 35 35 H 1.08997 * 109.47368 * 301.38776 * 15 14 13 36 36 H 1.09006 * 109.46616 * 61.38295 * 15 14 13 37 37 H 1.08997 * 109.47115 * 181.37965 * 15 14 13 38 38 H 1.09001 * 110.38896 * 329.57147 * 16 14 13 39 39 H 1.09007 * 110.48496 * 207.23535 * 16 14 13 40 40 H 1.07997 * 128.08336 * 359.97184 * 21 20 18 41 41 H 1.08999 * 110.38050 * 201.41249 * 26 17 16 42 42 H 1.08993 * 110.38752 * 79.03362 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1076 1.4250 0.0000 4 7 3.2964 1.3917 -0.8675 5 6 4.4264 2.1542 -0.7370 6 1 5.3214 1.8907 -1.2812 7 6 4.4215 3.2655 0.0945 8 7 3.2904 3.6945 0.6132 9 14 6.0204 4.1525 0.4776 10 1 6.2496 5.2176 -0.5315 11 1 5.9372 4.7611 1.8296 12 1 7.1453 3.1838 0.4391 13 6 3.0306 0.3833 -1.9064 14 6 2.1377 -0.6869 -1.2506 15 6 1.0607 -1.2208 -2.1971 16 6 3.0265 -1.8158 -0.6875 17 7 3.3640 -1.3787 0.6868 18 6 4.5443 -1.4990 1.3263 19 8 4.6643 -1.0863 2.4637 20 6 5.6909 -2.1303 0.6459 21 6 6.9461 -2.3196 1.1552 22 6 7.6436 -2.9613 0.1057 23 17 9.3009 -3.4781 0.1243 24 7 6.8008 -3.0838 -0.8795 25 8 5.7144 -2.6312 -0.6037 26 6 2.1099 -0.7795 1.1988 27 1 -0.3634 0.5296 -0.8807 28 1 -0.3634 -1.0275 -0.0182 29 1 -0.3632 0.4980 0.8990 30 1 2.3912 1.7136 1.0122 31 1 1.3739 2.1261 -0.3976 32 1 3.2870 4.4714 1.1940 33 1 2.5121 0.8417 -2.7486 34 1 3.9663 -0.0642 -2.2415 35 1 0.4330 -0.3963 -2.5352 36 1 1.5350 -1.6929 -3.0576 37 1 0.4472 -1.9535 -1.6730 38 1 3.9316 -1.9207 -1.2857 39 1 2.4773 -2.7571 -0.6625 40 1 7.3174 -2.0448 2.1314 41 1 2.3230 -0.1016 2.0254 42 1 1.4178 -1.5597 1.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982752365.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:36 Heat of formation + Delta-G solvation = 46.963972 kcal Electronic energy + Delta-G solvation = -29051.729420 eV Core-core repulsion = 25061.732215 eV Total energy + Delta-G solvation = -3989.997205 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.39024 -41.83780 -39.89699 -38.31583 -36.54164 -35.04713 -34.64917 -33.53351 -32.87083 -32.51267 -28.41457 -27.95064 -26.97022 -26.52175 -24.94596 -24.83479 -23.77205 -21.81128 -21.50566 -19.52571 -19.23547 -19.14757 -18.43836 -17.60766 -17.17896 -16.97979 -16.65589 -16.04565 -15.61952 -15.46089 -15.11895 -14.91809 -14.74716 -14.38973 -14.30432 -13.92990 -13.81036 -13.74307 -13.54305 -13.33405 -12.94328 -12.86378 -12.80578 -12.52643 -12.42788 -12.28243 -12.11390 -11.94202 -11.79330 -11.56178 -11.45313 -11.29190 -11.14782 -11.07420 -11.07260 -10.71602 -9.80490 -8.80300 -7.92440 -5.24095 -0.52447 0.19602 0.55910 1.19863 1.36407 1.39022 1.46065 1.80501 1.94962 2.43763 2.90413 3.27111 3.38133 3.45815 3.51812 3.69852 3.73001 3.76143 3.91787 4.18936 4.37403 4.43939 4.46851 4.58920 4.64399 4.74526 4.82763 4.86360 4.91104 5.01764 5.10593 5.13453 5.26326 5.30656 5.38016 5.44422 5.47945 5.55391 5.67261 5.82865 6.21845 6.28962 6.51645 6.80368 7.07144 7.76026 8.46687 9.20077 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009715 B = 0.005294 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.372414 B = 5288.119206 C = 6996.588409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.087 4.087 3 C 0.190 3.810 4 N -0.611 5.611 5 C -0.230 4.230 6 H 0.066 0.934 7 C -0.055 4.055 8 N -0.940 5.940 9 Si 0.958 3.042 10 H -0.281 1.281 11 H -0.294 1.294 12 H -0.277 1.277 13 C 0.137 3.863 14 C -0.072 4.072 15 C -0.118 4.118 16 C 0.109 3.891 17 N -0.593 5.593 18 C 0.620 3.380 19 O -0.552 6.552 20 C -0.059 4.059 21 C -0.139 4.139 22 C 0.055 3.945 23 Cl 0.051 6.949 24 N -0.341 5.341 25 O 0.138 5.862 26 C 0.126 3.874 27 H 0.061 0.939 28 H 0.094 0.906 29 H 0.052 0.948 30 H 0.029 0.971 31 H -0.008 1.008 32 H 0.246 0.754 33 H 0.018 0.982 34 H 0.037 0.963 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.119 0.881 40 H 0.207 0.793 41 H 0.049 0.951 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.634 -18.154 -2.626 18.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.089 4.089 3 C 0.064 3.936 4 N -0.335 5.335 5 C -0.360 4.360 6 H 0.084 0.916 7 C -0.249 4.249 8 N -0.588 5.588 9 Si 0.787 3.213 10 H -0.208 1.208 11 H -0.220 1.220 12 H -0.203 1.203 13 C 0.012 3.988 14 C -0.074 4.074 15 C -0.175 4.175 16 C -0.013 4.013 17 N -0.323 5.323 18 C 0.406 3.594 19 O -0.432 6.432 20 C -0.125 4.125 21 C -0.162 4.162 22 C -0.128 4.128 23 Cl 0.079 6.921 24 N -0.043 5.043 25 O 0.063 5.937 26 C 0.004 3.996 27 H 0.080 0.920 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.047 0.953 31 H 0.010 0.990 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.137 0.863 40 H 0.224 0.776 41 H 0.068 0.932 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.115 -18.322 -3.094 18.614 hybrid contribution 1.620 1.725 1.105 2.612 sum 0.505 -16.596 -1.989 16.723 Atomic orbital electron populations 1.21593 0.90078 1.03519 1.02094 1.22483 0.97249 0.95367 0.93840 1.20998 0.86798 0.91573 0.94203 1.44554 1.16034 1.43495 1.29383 1.19109 0.89248 1.04039 1.23573 0.91622 1.25473 0.99389 0.98287 1.01774 1.70088 1.25245 1.26357 1.37118 0.85390 0.80159 0.78697 0.77057 1.20784 1.22011 1.20256 1.21649 0.96386 0.89735 0.91062 1.22330 0.95705 0.93977 0.95378 1.21641 0.96398 1.01410 0.98100 1.22960 0.99848 0.98044 0.80427 1.48609 1.09755 1.56865 1.17039 1.16064 0.80115 0.78725 0.84503 1.90843 1.82466 1.51120 1.18726 1.23999 0.98014 1.03934 0.86550 1.22958 0.90594 1.00115 1.02557 1.24124 0.92421 1.04064 0.92170 1.98421 1.06964 1.88648 1.98103 1.73781 0.92397 1.15612 1.22514 1.85112 1.25735 1.55139 1.27715 1.22564 0.83593 0.97062 0.96377 0.92011 0.88770 0.92864 0.95252 0.98997 0.94431 0.96445 0.94508 0.92172 0.91050 0.89172 0.90148 0.86327 0.77570 0.93203 0.87030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 7.54 71.98 0.54 -2.11 16 2 C -0.09 -2.74 1.08 -50.77 -0.05 -2.80 16 3 C 0.19 8.90 4.68 86.50 0.41 9.30 16 4 N -0.61 -30.54 3.38 -694.93 -2.35 -32.89 16 5 C -0.23 -13.10 10.28 84.03 0.86 -12.24 16 6 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 7 C -0.06 -3.22 5.38 84.86 0.46 -2.76 16 8 N -0.94 -57.48 10.87 21.65 0.24 -57.25 16 9 Si 0.96 47.82 29.56 68.60 2.03 49.85 16 10 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 11 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 12 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 13 C 0.14 5.29 6.34 86.59 0.55 5.83 16 14 C -0.07 -1.98 1.08 -50.67 -0.05 -2.04 16 15 C -0.12 -2.13 7.59 71.98 0.55 -1.58 16 16 C 0.11 2.73 5.75 86.52 0.50 3.23 16 17 N -0.59 -19.25 3.31 -812.18 -2.69 -21.94 16 18 C 0.62 22.75 7.91 86.69 0.69 23.44 16 19 O -0.55 -24.00 17.18 -3.97 -0.07 -24.07 16 20 C -0.06 -1.87 7.11 24.38 0.17 -1.70 16 21 C -0.14 -3.89 10.96 22.71 0.25 -3.64 16 22 C 0.06 1.47 7.97 85.71 0.68 2.15 16 23 Cl 0.05 1.08 29.33 -2.72 -0.08 1.00 16 24 N -0.34 -9.80 12.05 -51.03 -0.61 -10.41 16 25 O 0.14 4.02 8.50 65.79 0.56 4.58 16 26 C 0.13 3.93 6.05 86.51 0.52 4.46 16 27 H 0.06 1.45 7.20 -2.38 -0.02 1.43 16 28 H 0.09 1.44 7.21 -2.39 -0.02 1.42 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.03 1.63 6.03 -2.38 -0.01 1.62 16 31 H -0.01 -0.41 7.89 -2.39 -0.02 -0.43 16 32 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 33 H 0.02 0.69 7.93 -2.38 -0.02 0.67 16 34 H 0.04 1.42 7.40 -2.39 -0.02 1.40 16 35 H 0.06 1.17 7.18 -2.39 -0.02 1.16 16 36 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 37 H 0.09 1.11 7.21 -2.39 -0.02 1.09 16 38 H 0.08 2.13 4.91 -2.39 -0.01 2.12 16 39 H 0.12 2.00 7.96 -2.38 -0.02 1.98 16 40 H 0.21 5.00 8.06 -2.91 -0.02 4.98 16 41 H 0.05 1.96 7.16 -2.39 -0.02 1.94 16 42 H 0.11 2.52 7.97 -2.39 -0.02 2.50 16 Total: -1.00 -73.57 351.80 4.14 -69.42 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.06 Total: 2.18 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 6.07 Total: 19.54 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -5.42 Total: -122.49 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.49 Total: -19.49 kcal Atomic # 14 Polarization: 47.82 SS G_CDS: 2.03 Total: 49.85 kcal Atomic # 17 Polarization: 1.08 SS G_CDS: -0.08 Total: 1.00 kcal Total: -73.57 4.14 -69.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982752365.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.386 kcal (2) G-P(sol) polarization free energy of solvation -73.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds