Wall clock time and date at job start Tue Mar 31 2020 22:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99596 * 2 1 4 4 H 1.48495 * 109.47291 * 269.99902 * 3 2 1 5 5 H 1.48498 * 109.47136 * 30.00277 * 3 2 1 6 6 H 1.48500 * 109.46839 * 150.00068 * 3 2 1 7 7 C 1.38813 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99583 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99559 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.02814 * 36.05467 * 10 9 7 12 12 C 1.52815 * 109.04581 * 277.16420 * 10 9 7 13 13 C 1.53214 * 108.12723 * 298.58019 * 12 10 9 14 14 C 1.52602 * 108.50716 * 296.11586 * 13 12 10 15 15 C 1.52992 * 110.97303 * 62.31895 * 14 13 12 16 16 H 1.09002 * 112.19657 * 73.59835 * 15 14 13 17 17 C 1.55439 * 106.44591 * 197.06495 * 15 14 13 18 18 N 1.47377 * 106.74158 * 89.98996 * 17 15 14 19 19 C 1.34773 * 125.74390 * 181.04011 * 18 17 15 20 20 O 1.21594 * 119.99803 * 180.02562 * 19 18 17 21 21 C 1.47518 * 120.00293 * 0.02562 * 19 18 17 22 22 C 1.36785 * 126.92890 * 179.71204 * 21 19 18 23 23 C 1.41410 * 103.83722 * 179.87859 * 22 21 19 24 24 Cl 1.73603 * 126.72385 * 180.14145 * 23 22 21 25 25 N 1.30219 * 106.54999 * 0.38768 * 23 22 21 26 26 O 1.20887 * 111.96124 * 359.74985 * 25 23 22 27 27 C 1.47927 * 108.50873 * 1.05722 * 18 17 15 28 28 C 1.50855 * 109.03785 * 155.00502 * 10 9 7 29 29 H 1.09007 * 109.35320 * 305.69550 * 28 10 9 30 30 H 0.96997 * 120.00315 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00129 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.72307 * 58.24181 * 12 10 9 33 33 H 1.08998 * 109.72625 * 178.86852 * 12 10 9 34 34 H 1.08998 * 109.57020 * 176.43820 * 13 12 10 35 35 H 1.09004 * 109.65929 * 55.84420 * 13 12 10 36 36 H 1.09002 * 109.17054 * 301.94774 * 14 13 12 37 37 H 1.09000 * 109.16892 * 182.68659 * 14 13 12 38 38 H 1.09000 * 110.00510 * 209.30876 * 17 15 14 39 39 H 1.08996 * 110.00987 * 330.62235 * 17 15 14 40 40 H 1.07998 * 128.07985 * 359.96219 * 22 21 19 41 41 H 1.09008 * 110.57079 * 143.05632 * 27 18 17 42 42 H 1.09005 * 110.57141 * 265.77645 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9579 -3.5482 0.6041 12 6 2.4626 -3.9978 -1.4354 13 6 1.1850 -4.1541 -2.2665 14 6 0.3952 -5.3410 -1.7222 15 6 -0.0311 -5.0969 -0.2733 16 1 -0.8410 -4.3712 -0.1990 17 6 -0.4197 -6.4840 0.3107 18 7 0.8061 -7.0574 0.8945 19 6 0.9060 -8.2634 1.4878 20 8 1.9739 -8.6337 1.9361 21 6 -0.2801 -9.1342 1.5932 22 6 -0.3383 -10.3787 2.1577 23 6 -1.6904 -10.7602 1.9966 24 17 -2.4171 -12.2502 2.5119 25 7 -2.2825 -9.7770 1.3814 26 8 -1.5222 -8.8666 1.1478 27 6 1.9081 -6.0861 0.7201 28 6 1.1856 -4.7295 0.6011 29 1 0.8456 -4.4077 1.5855 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 3.0732 -3.1940 -1.8465 33 1 3.0263 -4.9306 -1.4466 34 1 1.4474 -4.3357 -3.3087 35 1 0.5842 -3.2479 -2.1894 36 1 1.0168 -6.2353 -1.7667 37 1 -0.4929 -5.4917 -2.3360 38 1 -1.1796 -6.3639 1.0829 39 1 -0.7936 -7.1312 -0.4826 40 1 0.4613 -10.9386 2.6198 41 1 2.5668 -6.0942 1.5886 42 1 2.4705 -6.3039 -0.1879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992856685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:04 Heat of formation + Delta-G solvation = 40.969549 kcal Electronic energy + Delta-G solvation = -27507.181729 eV Core-core repulsion = 23516.924586 eV Total energy + Delta-G solvation = -3990.257143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.59817 -40.71578 -38.87555 -37.58616 -35.81035 -34.16779 -33.48429 -32.61093 -31.52915 -30.58840 -29.40187 -26.68129 -25.57833 -24.05523 -23.89663 -22.64524 -21.96974 -21.12166 -20.67106 -18.54666 -18.39365 -17.76981 -17.24259 -16.77252 -16.26645 -16.05623 -15.26457 -14.92288 -14.61727 -14.27615 -14.02055 -13.93419 -13.65061 -13.50402 -13.20322 -13.08347 -12.89224 -12.74902 -12.58430 -11.75894 -11.68157 -11.53931 -11.43739 -11.24621 -11.03426 -10.87375 -10.76772 -10.58710 -10.53260 -10.25547 -10.18625 -10.14103 -9.80916 -9.64865 -9.53423 -8.88951 -8.84313 -6.98895 -5.80052 -3.08212 0.30391 0.96883 1.34186 2.09530 2.64827 2.76426 3.41447 3.47457 3.48460 3.70958 4.23146 4.25683 4.49798 4.52088 4.54552 4.77910 4.90440 5.18824 5.20898 5.31248 5.43104 5.50035 5.55778 5.67211 5.71209 5.75471 5.82044 5.87617 5.93427 6.05280 6.13313 6.23561 6.34241 6.38002 6.47344 6.76149 6.80572 6.98317 7.06243 7.11461 7.34655 7.65992 7.68343 8.38595 9.50524 10.06618 10.41825 11.42487 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.002371 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.166430 B =11808.051857 C =11982.953963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.904 3.096 4 H -0.291 1.291 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.719 5.719 10 C 0.188 3.812 11 H 0.048 0.952 12 C -0.135 4.135 13 C -0.113 4.113 14 C -0.110 4.110 15 C -0.084 4.084 16 H 0.106 0.894 17 C 0.091 3.909 18 N -0.598 5.598 19 C 0.615 3.385 20 O -0.513 6.513 21 C -0.058 4.058 22 C -0.141 4.141 23 C 0.051 3.949 24 Cl 0.032 6.968 25 N -0.328 5.328 26 O 0.141 5.859 27 C 0.114 3.886 28 C -0.096 4.096 29 H 0.084 0.916 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.064 0.936 33 H 0.044 0.956 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.194 0.806 41 H 0.083 0.917 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.558 -21.670 1.247 21.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.219 1.219 6 H -0.208 1.208 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.361 5.361 10 C 0.078 3.922 11 H 0.066 0.934 12 C -0.176 4.176 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.103 4.103 16 H 0.124 0.876 17 C -0.031 4.031 18 N -0.330 5.330 19 C 0.399 3.601 20 O -0.389 6.389 21 C -0.124 4.124 22 C -0.164 4.164 23 C -0.132 4.132 24 Cl 0.060 6.940 25 N -0.028 5.028 26 O 0.064 5.936 27 C -0.007 4.007 28 C -0.116 4.116 29 H 0.102 0.898 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.082 0.918 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.093 0.907 39 H 0.095 0.905 40 H 0.212 0.788 41 H 0.102 0.898 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.184 -21.749 1.191 22.014 hybrid contribution 0.523 0.377 0.346 0.732 sum -2.661 -21.372 1.536 21.592 Atomic orbital electron populations 1.69643 1.05045 1.25636 1.57792 1.24702 0.95473 0.97571 1.03084 0.86235 0.78690 0.84054 0.77470 1.21814 1.21881 1.20822 1.19213 0.90982 0.84032 1.42503 0.91214 1.42379 1.05692 0.99379 1.88603 1.19521 0.93747 0.85630 0.93290 0.93429 1.22193 0.96953 0.99637 0.98773 1.21377 0.97469 0.98675 0.97508 1.21552 0.99781 0.98812 0.94601 1.22288 0.98762 0.94044 0.95190 0.87616 1.22773 0.86198 0.95966 0.98145 1.48591 1.13439 1.15508 1.55436 1.15988 0.84737 0.80010 0.79353 1.90900 1.26196 1.72890 1.48917 1.24237 0.87464 0.97445 1.03266 1.22722 0.96187 0.94804 1.02686 1.24053 0.91806 0.93248 1.04106 1.98428 1.82667 1.24755 1.88168 1.73879 1.16704 0.97252 1.14975 1.85157 1.15581 1.34135 1.58737 1.22491 0.89007 0.86653 1.02590 1.21925 0.95724 0.93525 1.00394 0.89763 0.93549 0.78193 0.91766 0.93745 0.93410 0.90072 0.92667 0.92376 0.90682 0.90502 0.78838 0.89823 0.90038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.76 13.06 55.49 0.72 -26.04 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 21.65 29.55 -169.99 -5.02 16.63 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.24 -6.10 9.89 -15.06 -0.15 -6.25 16 8 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 9 N -0.72 -16.07 4.17 -54.57 -0.23 -16.30 16 10 C 0.19 3.27 2.53 -69.10 -0.17 3.09 16 11 H 0.05 0.87 8.08 -51.93 -0.42 0.45 16 12 C -0.14 -2.14 5.41 -26.72 -0.14 -2.29 16 13 C -0.11 -1.69 5.84 -26.82 -0.16 -1.85 16 14 C -0.11 -1.36 4.60 -26.94 -0.12 -1.48 16 15 C -0.08 -1.06 3.27 -88.67 -0.29 -1.35 16 16 H 0.11 1.44 7.94 -51.93 -0.41 1.03 16 17 C 0.09 0.99 4.87 -2.27 -0.01 0.98 16 18 N -0.60 -7.15 3.34 -170.82 -0.57 -7.72 16 19 C 0.61 7.70 7.86 -12.48 -0.10 7.60 16 20 O -0.51 -7.68 17.19 5.28 0.09 -7.59 16 21 C -0.06 -0.63 7.08 -36.33 -0.26 -0.89 16 22 C -0.14 -1.33 10.96 -38.90 -0.43 -1.76 16 23 C 0.05 0.51 7.97 -17.03 -0.14 0.37 16 24 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 25 N -0.33 -3.72 12.05 32.82 0.40 -3.33 16 26 O 0.14 1.53 9.04 15.55 0.14 1.67 16 27 C 0.11 1.44 5.79 -2.65 -0.02 1.42 16 28 C -0.10 -1.36 2.43 -90.43 -0.22 -1.58 16 29 H 0.08 1.31 8.14 -51.92 -0.42 0.88 16 30 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.38 9.11 7.25 -40.82 -0.30 8.82 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.04 0.60 6.70 -51.93 -0.35 0.26 16 34 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 1.48 7.40 -51.93 -0.38 1.10 16 36 H 0.05 0.65 6.93 -51.93 -0.36 0.29 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.77 7.85 -51.93 -0.41 0.36 16 39 H 0.08 0.74 7.36 -51.93 -0.38 0.36 16 40 H 0.19 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.08 1.08 8.05 -51.92 -0.42 0.66 16 42 H 0.08 0.99 5.79 -51.93 -0.30 0.69 16 LS Contribution 353.16 15.07 5.32 5.32 Total: -1.00 -28.90 353.16 -8.36 -37.25 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -5.39 Total: 5.77 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: -2.30 Total: -4.41 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: 0.32 Total: -53.38 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: 0.23 Total: -5.91 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.90 -8.36 -37.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992856685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.221 kcal (2) G-P(sol) polarization free energy of solvation -28.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds