Wall clock time and date at job start Tue Mar 31 2020 22:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99596 * 2 1 4 4 H 1.48495 * 109.47291 * 269.99902 * 3 2 1 5 5 H 1.48498 * 109.47136 * 30.00277 * 3 2 1 6 6 H 1.48500 * 109.46839 * 150.00068 * 3 2 1 7 7 C 1.38813 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00306 * 180.02562 * 7 2 1 9 9 N 1.36937 * 119.99583 * 359.97438 * 7 2 1 10 10 C 1.46505 * 119.99559 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.02814 * 36.05467 * 10 9 7 12 12 C 1.52815 * 109.04581 * 277.16420 * 10 9 7 13 13 C 1.53214 * 108.12723 * 298.58019 * 12 10 9 14 14 C 1.52602 * 108.50716 * 296.11586 * 13 12 10 15 15 C 1.52992 * 110.97303 * 62.31895 * 14 13 12 16 16 H 1.09002 * 112.19657 * 73.59835 * 15 14 13 17 17 C 1.55439 * 106.44591 * 197.06495 * 15 14 13 18 18 N 1.47377 * 106.74158 * 89.98996 * 17 15 14 19 19 C 1.34773 * 125.74390 * 181.04011 * 18 17 15 20 20 O 1.21594 * 119.99803 * 180.02562 * 19 18 17 21 21 C 1.47518 * 120.00293 * 0.02562 * 19 18 17 22 22 C 1.36785 * 126.92890 * 179.71204 * 21 19 18 23 23 C 1.41410 * 103.83722 * 179.87859 * 22 21 19 24 24 Cl 1.73603 * 126.72385 * 180.14145 * 23 22 21 25 25 N 1.30219 * 106.54999 * 0.38768 * 23 22 21 26 26 O 1.20887 * 111.96124 * 359.74985 * 25 23 22 27 27 C 1.47927 * 108.50873 * 1.05722 * 18 17 15 28 28 C 1.50855 * 109.03785 * 155.00502 * 10 9 7 29 29 H 1.09007 * 109.35320 * 305.69550 * 28 10 9 30 30 H 0.96997 * 120.00315 * 0.02562 * 1 2 3 31 31 H 0.96997 * 120.00129 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.72307 * 58.24181 * 12 10 9 33 33 H 1.08998 * 109.72625 * 178.86852 * 12 10 9 34 34 H 1.08998 * 109.57020 * 176.43820 * 13 12 10 35 35 H 1.09004 * 109.65929 * 55.84420 * 13 12 10 36 36 H 1.09002 * 109.17054 * 301.94774 * 14 13 12 37 37 H 1.09000 * 109.16892 * 182.68659 * 14 13 12 38 38 H 1.09000 * 110.00510 * 209.30876 * 17 15 14 39 39 H 1.08996 * 110.00987 * 330.62235 * 17 15 14 40 40 H 1.07998 * 128.07985 * 359.96219 * 22 21 19 41 41 H 1.09008 * 110.57079 * 143.05632 * 27 18 17 42 42 H 1.09005 * 110.57141 * 265.77645 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0583 -3.6567 -0.0017 11 1 2.9579 -3.5482 0.6041 12 6 2.4626 -3.9978 -1.4354 13 6 1.1850 -4.1541 -2.2665 14 6 0.3952 -5.3410 -1.7222 15 6 -0.0311 -5.0969 -0.2733 16 1 -0.8410 -4.3712 -0.1990 17 6 -0.4197 -6.4840 0.3107 18 7 0.8061 -7.0574 0.8945 19 6 0.9060 -8.2634 1.4878 20 8 1.9739 -8.6337 1.9361 21 6 -0.2801 -9.1342 1.5932 22 6 -0.3383 -10.3787 2.1577 23 6 -1.6904 -10.7602 1.9966 24 17 -2.4171 -12.2502 2.5119 25 7 -2.2825 -9.7770 1.3814 26 8 -1.5222 -8.8666 1.1478 27 6 1.9081 -6.0861 0.7201 28 6 1.1856 -4.7295 0.6011 29 1 0.8456 -4.4077 1.5855 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3880 -0.0005 32 1 3.0732 -3.1940 -1.8465 33 1 3.0263 -4.9306 -1.4466 34 1 1.4474 -4.3357 -3.3087 35 1 0.5842 -3.2479 -2.1894 36 1 1.0168 -6.2353 -1.7667 37 1 -0.4929 -5.4917 -2.3360 38 1 -1.1796 -6.3639 1.0829 39 1 -0.7936 -7.1312 -0.4826 40 1 0.4613 -10.9386 2.6198 41 1 2.5668 -6.0942 1.5886 42 1 2.4705 -6.3039 -0.1879 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992856685.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:03 Heat of formation + Delta-G solvation = 24.239182 kcal Electronic energy + Delta-G solvation = -27507.907212 eV Core-core repulsion = 23516.924586 eV Total energy + Delta-G solvation = -3990.982626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.39855 -41.79251 -39.97919 -38.28158 -37.10636 -35.15655 -34.87872 -33.49328 -33.08657 -31.68159 -30.90219 -27.96095 -26.66471 -25.47243 -24.84518 -23.83129 -23.15058 -22.30807 -21.56737 -19.59474 -19.22514 -19.14531 -18.91392 -17.65646 -17.33404 -17.04144 -16.47899 -16.20958 -15.90155 -15.41663 -15.25894 -15.14777 -14.95018 -14.77016 -14.20899 -14.11696 -13.90704 -13.79964 -13.58867 -13.23855 -12.92303 -12.76556 -12.67432 -12.59534 -12.36945 -12.25304 -12.16298 -11.99439 -11.80873 -11.57177 -11.27201 -11.25897 -11.13781 -11.07292 -10.82500 -10.63631 -9.83013 -8.90154 -7.87737 -5.13008 -0.52695 0.24691 0.57296 1.21284 1.50215 1.50688 1.58315 1.72075 1.87027 2.60520 2.89850 3.34622 3.43938 3.46460 3.50672 3.65373 3.74992 3.81725 4.13275 4.22704 4.33320 4.39180 4.44965 4.51962 4.56651 4.64210 4.67122 4.79335 4.80667 4.88254 4.94028 5.04521 5.12667 5.20990 5.31702 5.45434 5.52246 5.58460 5.68645 5.78252 6.15075 6.35478 6.50479 6.73989 7.42795 8.20310 8.43559 9.35536 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.025468 B = 0.002371 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.166430 B =11808.051857 C =11982.953963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.074 4.074 3 Si 0.961 3.039 4 H -0.291 1.291 5 H -0.300 1.300 6 H -0.273 1.273 7 C -0.227 4.227 8 H 0.072 0.928 9 N -0.727 5.727 10 C 0.186 3.814 11 H 0.038 0.962 12 C -0.129 4.129 13 C -0.109 4.109 14 C -0.102 4.102 15 C -0.083 4.083 16 H 0.092 0.908 17 C 0.099 3.901 18 N -0.597 5.597 19 C 0.620 3.380 20 O -0.540 6.540 21 C -0.068 4.068 22 C -0.126 4.126 23 C 0.048 3.952 24 Cl 0.047 6.953 25 N -0.343 5.343 26 O 0.141 5.859 27 C 0.122 3.878 28 C -0.090 4.090 29 H 0.067 0.933 30 H 0.248 0.752 31 H 0.375 0.625 32 H 0.039 0.961 33 H 0.075 0.925 34 H 0.061 0.939 35 H 0.042 0.958 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.214 0.786 41 H 0.080 0.920 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.209 -23.966 0.988 24.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.792 3.208 4 H -0.219 1.219 5 H -0.227 1.227 6 H -0.198 1.198 7 C -0.359 4.359 8 H 0.090 0.910 9 N -0.367 5.367 10 C 0.077 3.923 11 H 0.056 0.944 12 C -0.169 4.169 13 C -0.147 4.147 14 C -0.139 4.139 15 C -0.102 4.102 16 H 0.110 0.890 17 C -0.023 4.023 18 N -0.328 5.328 19 C 0.405 3.595 20 O -0.418 6.418 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.135 4.135 24 Cl 0.075 6.925 25 N -0.044 5.044 26 O 0.064 5.936 27 C 0.000 4.000 28 C -0.110 4.110 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.208 0.792 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.061 0.939 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.231 0.769 41 H 0.099 0.901 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.809 -24.081 0.925 24.262 hybrid contribution 0.434 0.994 0.448 1.173 sum -2.375 -23.087 1.372 23.250 Atomic orbital electron populations 1.69782 1.06274 1.25623 1.60158 1.25372 0.96220 1.00454 1.04565 0.85309 0.77781 0.80556 0.77159 1.21862 1.22701 1.19785 1.19547 0.91255 0.85307 1.39831 0.91016 1.42519 1.05433 1.00346 1.88444 1.19698 0.93477 0.84664 0.94450 0.94403 1.22081 0.97431 1.00183 0.97177 1.21305 0.96707 0.98265 0.98438 1.21504 1.00349 0.97934 0.94131 1.22216 0.97593 0.94909 0.95489 0.88962 1.22758 0.85800 0.94856 0.98847 1.48561 1.13514 1.15355 1.55363 1.16035 0.84817 0.79935 0.78676 1.90889 1.27355 1.73512 1.50058 1.23970 0.87183 0.97731 1.04510 1.23002 0.96385 0.94188 1.01349 1.24229 0.92040 0.93540 1.03650 1.98438 1.82474 1.23689 1.87929 1.73862 1.17098 0.97772 1.15635 1.85139 1.15445 1.34118 1.58884 1.22342 0.88960 0.85601 1.03049 1.21686 0.96177 0.93528 0.99579 0.91435 0.94327 0.79221 0.94209 0.90658 0.92003 0.93877 0.90956 0.90729 0.90012 0.88479 0.76891 0.90149 0.88882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.03 13.06 21.65 0.28 -56.75 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.96 45.25 29.55 68.60 2.03 47.28 16 4 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 5 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 7 C -0.23 -11.91 9.89 84.03 0.83 -11.08 16 8 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -33.22 4.17 -326.56 -1.36 -34.58 16 10 C 0.19 6.43 2.53 44.23 0.11 6.54 16 11 H 0.04 1.38 8.08 -2.39 -0.02 1.36 16 12 C -0.13 -3.95 5.41 30.60 0.17 -3.79 16 13 C -0.11 -3.17 5.84 30.53 0.18 -2.99 16 14 C -0.10 -2.27 4.60 30.46 0.14 -2.13 16 15 C -0.08 -2.00 3.27 -9.53 -0.03 -2.03 16 16 H 0.09 2.51 7.94 -2.39 -0.02 2.49 16 17 C 0.10 1.92 4.87 87.05 0.42 2.34 16 18 N -0.60 -12.99 3.34 -812.60 -2.72 -15.71 16 19 C 0.62 14.24 7.86 86.69 0.68 14.92 16 20 O -0.54 -15.20 17.19 -4.01 -0.07 -15.27 16 21 C -0.07 -1.33 7.08 24.38 0.17 -1.15 16 22 C -0.13 -2.09 10.96 22.71 0.25 -1.84 16 23 C 0.05 0.85 7.97 85.71 0.68 1.54 16 24 Cl 0.05 0.67 29.33 -2.72 -0.08 0.59 16 25 N -0.34 -7.09 12.05 -51.03 -0.61 -7.70 16 26 O 0.14 2.77 9.04 65.81 0.60 3.36 16 27 C 0.12 2.86 5.79 86.50 0.50 3.36 16 28 C -0.09 -2.50 2.43 -10.67 -0.03 -2.52 16 29 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.38 18.40 7.25 -92.71 -0.67 17.73 16 32 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.86 6.70 -2.39 -0.02 1.84 16 34 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.04 1.59 7.40 -2.38 -0.02 1.57 16 36 H 0.07 1.41 6.93 -2.39 -0.02 1.40 16 37 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.08 1.52 7.85 -2.39 -0.02 1.50 16 39 H 0.10 1.56 7.36 -2.39 -0.02 1.54 16 40 H 0.21 2.55 8.06 -2.91 -0.02 2.53 16 41 H 0.08 1.96 8.05 -2.38 -0.02 1.95 16 42 H 0.09 1.99 5.79 -2.38 -0.01 1.97 16 Total: -1.00 -62.70 353.16 3.01 -59.70 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.40 Total: 21.56 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: 4.55 Total: -2.46 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -4.41 Total: -114.75 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.53 Total: -11.91 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -62.70 3.01 -59.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992856685.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.935 kcal (2) G-P(sol) polarization free energy of solvation -62.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds