Wall clock time and date at job start Tue Mar 31 2020 22:40:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48493 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46653 * 299.99767 * 3 2 1 6 6 H 1.48499 * 109.47283 * 59.99597 * 3 2 1 7 7 C 1.38810 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00564 * 179.97438 * 9 7 2 11 11 H 1.09002 * 108.17262 * 32.13034 * 10 9 7 12 12 C 1.51494 * 108.27674 * 275.00046 * 10 9 7 13 13 C 1.52672 * 110.81451 * 191.85410 * 12 10 9 14 14 C 1.52845 * 108.58004 * 60.04407 * 13 12 10 15 15 C 1.52900 * 109.68723 * 294.87886 * 14 13 12 16 16 H 1.09002 * 111.17141 * 289.44441 * 15 14 13 17 17 C 1.54799 * 107.41758 * 167.41714 * 15 14 13 18 18 N 1.46938 * 107.28274 * 262.33228 * 17 15 14 19 19 C 1.34772 * 125.40387 * 178.40396 * 18 17 15 20 20 O 1.21589 * 120.00078 * 180.02562 * 19 18 17 21 21 C 1.47525 * 120.00247 * 0.04148 * 19 18 17 22 22 C 1.36781 * 126.92776 * 179.71061 * 21 19 18 23 23 C 1.41408 * 103.83966 * 179.87224 * 22 21 19 24 24 Cl 1.73595 * 126.73091 * 180.13656 * 23 22 21 25 25 N 1.30231 * 106.54808 * 0.39211 * 23 22 21 26 26 O 1.20890 * 111.95791 * 359.74428 * 25 23 22 27 27 C 1.47231 * 109.19038 * 358.43750 * 18 17 15 28 28 C 1.50162 * 108.19731 * 148.40810 * 10 9 7 29 29 H 1.08995 * 108.27337 * 280.02914 * 28 10 9 30 30 H 0.96994 * 120.00457 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99769 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.20904 * 71.51383 * 12 10 9 33 33 H 1.08993 * 109.21263 * 312.20002 * 12 10 9 34 34 H 1.09002 * 109.62262 * 300.31672 * 13 12 10 35 35 H 1.09004 * 109.76760 * 179.86205 * 13 12 10 36 36 H 1.08999 * 109.43561 * 174.80397 * 14 13 12 37 37 H 1.09007 * 109.39319 * 54.91647 * 14 13 12 38 38 H 1.08995 * 109.88311 * 142.90427 * 17 15 14 39 39 H 1.09004 * 109.87653 * 21.74850 * 17 15 14 40 40 H 1.08002 * 128.08585 * 359.97438 * 22 21 19 41 41 H 1.09002 * 110.24231 * 100.45927 * 27 18 17 42 42 H 1.08998 * 110.24289 * 222.36280 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9877 -3.5127 0.5513 12 6 2.4043 -4.0055 -1.4325 13 6 2.9054 -5.4440 -1.5349 14 6 1.8025 -6.3802 -1.0416 15 6 1.5498 -6.1390 0.4470 16 1 2.3829 -6.4986 1.0510 17 6 0.2325 -6.8632 0.8167 18 7 -0.8400 -5.8591 0.7897 19 6 -2.1441 -6.1031 1.0267 20 8 -2.9511 -5.1950 0.9778 21 6 -2.5923 -7.4719 1.3458 22 6 -3.8711 -7.8762 1.6144 23 6 -3.7450 -9.2653 1.8467 24 17 -5.0230 -10.3726 2.2391 25 7 -2.4812 -9.5503 1.7140 26 8 -1.8243 -8.5740 1.4370 27 6 -0.2640 -4.5444 0.4619 28 6 1.2403 -4.6704 0.7478 29 1 1.3894 -4.5098 1.8155 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 3.1812 -3.3290 -1.7886 33 1 1.5166 -3.8899 -2.0542 34 1 3.7939 -5.5671 -0.9157 35 1 3.1468 -5.6774 -2.5719 36 1 2.1096 -7.4148 -1.1945 37 1 0.8869 -6.1871 -1.6007 38 1 0.3132 -7.2927 1.8152 39 1 0.0241 -7.6477 0.0892 40 1 -4.7681 -7.2752 1.6411 41 1 -0.4298 -4.3117 -0.5900 42 1 -0.7043 -3.7720 1.0924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000992856689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:07 Heat of formation + Delta-G solvation = 40.033180 kcal Electronic energy + Delta-G solvation = -27572.994577 eV Core-core repulsion = 23582.696830 eV Total energy + Delta-G solvation = -3990.297747 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -45.54163 -40.61401 -38.76061 -37.54549 -35.74746 -34.17559 -33.98218 -32.59982 -31.65522 -30.75887 -28.90707 -26.90819 -25.55891 -23.99840 -23.78581 -23.11534 -21.70866 -20.97977 -20.63231 -18.53054 -18.34583 -18.17860 -17.09663 -16.67811 -16.08711 -16.02603 -15.17879 -15.00197 -14.69964 -14.20784 -14.00485 -13.90573 -13.67647 -13.32721 -13.16629 -12.96553 -12.88269 -12.81179 -12.63409 -12.00521 -11.96490 -11.50564 -11.35129 -11.06314 -10.99444 -10.87653 -10.81951 -10.47524 -10.43599 -10.28490 -10.18719 -10.14612 -9.93186 -9.70790 -9.57258 -8.90953 -8.69886 -6.99241 -5.77314 -3.07254 0.38040 1.01169 1.39679 2.17769 2.78248 2.87880 3.42668 3.48188 3.50693 3.78000 4.29147 4.32949 4.46734 4.54131 4.60227 4.77244 4.80429 5.19983 5.27461 5.31425 5.38264 5.39337 5.54365 5.60928 5.69575 5.73584 5.76742 5.88840 6.01009 6.06133 6.15141 6.19939 6.32224 6.35091 6.43654 6.56703 6.69226 6.87882 7.11513 7.23608 7.41709 7.69631 7.80882 8.40302 9.51693 10.07024 10.40879 11.44949 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002718 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.229070 B =10298.712467 C =11564.624544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.012 4.012 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.730 5.730 10 C 0.190 3.810 11 H 0.048 0.952 12 C -0.129 4.129 13 C -0.117 4.117 14 C -0.111 4.111 15 C -0.086 4.086 16 H 0.095 0.905 17 C 0.095 3.905 18 N -0.597 5.597 19 C 0.610 3.390 20 O -0.500 6.500 21 C -0.055 4.055 22 C -0.142 4.142 23 C 0.052 3.948 24 Cl 0.031 6.969 25 N -0.331 5.331 26 O 0.137 5.863 27 C 0.117 3.883 28 C -0.088 4.088 29 H 0.075 0.925 30 H 0.255 0.745 31 H 0.385 0.615 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.195 0.805 41 H 0.079 0.921 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.921 -21.363 2.097 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.736 3.264 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.372 5.372 10 C 0.080 3.920 11 H 0.066 0.934 12 C -0.170 4.170 13 C -0.156 4.156 14 C -0.149 4.149 15 C -0.105 4.105 16 H 0.113 0.887 17 C -0.028 4.028 18 N -0.330 5.330 19 C 0.394 3.606 20 O -0.376 6.376 21 C -0.121 4.121 22 C -0.165 4.165 23 C -0.131 4.131 24 Cl 0.059 6.941 25 N -0.032 5.032 26 O 0.061 5.939 27 C -0.004 4.004 28 C -0.108 4.108 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.220 0.780 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.212 0.788 41 H 0.097 0.903 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -2.755 -21.942 2.259 22.230 hybrid contribution -0.673 1.260 0.058 1.429 sum -3.428 -20.683 2.317 21.092 Atomic orbital electron populations 1.69660 1.05046 1.25630 1.57476 1.24741 0.95481 0.97656 1.02952 0.86160 0.78760 0.84326 0.77169 1.20606 1.21925 1.21928 1.19265 0.90974 0.84060 1.42844 0.91122 1.42680 1.05859 0.99692 1.88992 1.19147 0.94303 0.85649 0.92891 0.93425 1.21873 1.01148 0.94203 0.99745 1.21443 0.97733 0.96136 1.00240 1.21577 0.99730 0.99085 0.94484 1.21918 0.95710 0.95221 0.97665 0.88717 1.22513 0.87022 0.91254 1.02016 1.48337 1.05446 1.12071 1.67123 1.16011 0.81984 0.83693 0.78900 1.90954 1.52422 1.42231 1.51950 1.24321 0.91021 0.90258 1.06507 1.22745 0.99030 0.92341 1.02370 1.24044 0.90293 0.91602 1.07128 1.98426 1.43209 1.60412 1.92039 1.73855 1.04853 1.09082 1.15425 1.85130 1.33424 1.11625 1.63720 1.22147 0.93106 0.82920 1.02193 1.21369 0.93845 0.93808 1.01807 0.90686 0.93487 0.77998 0.92038 0.92390 0.92248 0.92575 0.92117 0.91837 0.90924 0.90522 0.78776 0.90324 0.89050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.90 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 7 C -0.24 -6.36 9.86 -15.06 -0.15 -6.51 16 8 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 9 N -0.73 -16.99 4.90 -55.56 -0.27 -17.26 16 10 C 0.19 3.36 2.55 -70.10 -0.18 3.18 16 11 H 0.05 0.87 8.01 -51.93 -0.42 0.46 16 12 C -0.13 -2.08 5.41 -27.66 -0.15 -2.23 16 13 C -0.12 -1.40 5.94 -26.98 -0.16 -1.56 16 14 C -0.11 -1.18 4.80 -26.86 -0.13 -1.31 16 15 C -0.09 -0.93 3.28 -89.69 -0.29 -1.22 16 16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 17 C 0.09 0.99 5.04 -2.86 -0.01 0.98 16 18 N -0.60 -8.10 3.33 -172.47 -0.57 -8.67 16 19 C 0.61 8.78 7.84 -12.48 -0.10 8.68 16 20 O -0.50 -8.95 17.21 5.29 0.09 -8.86 16 21 C -0.06 -0.65 7.08 -36.32 -0.26 -0.91 16 22 C -0.14 -1.48 10.96 -38.90 -0.43 -1.91 16 23 C 0.05 0.55 7.97 -17.02 -0.14 0.41 16 24 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 25 N -0.33 -3.79 12.05 32.82 0.40 -3.40 16 26 O 0.14 1.52 8.98 15.55 0.14 1.66 16 27 C 0.12 1.88 4.73 -3.31 -0.02 1.86 16 28 C -0.09 -1.29 2.52 -91.66 -0.23 -1.52 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 9.56 5.72 -40.82 -0.23 9.33 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.75 8.00 -51.92 -0.42 0.33 16 38 H 0.07 0.67 7.84 -51.93 -0.41 0.27 16 39 H 0.08 0.71 7.23 -51.93 -0.38 0.34 16 40 H 0.20 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.08 1.36 7.91 -51.93 -0.41 0.95 16 42 H 0.09 1.73 7.68 -51.93 -0.40 1.33 16 LS Contribution 356.77 15.07 5.38 5.38 Total: -1.00 -30.30 356.77 -8.58 -38.89 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -5.58 Total: 5.90 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.33 Total: -2.49 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: 0.27 Total: -56.19 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.23 Total: -7.20 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.30 -8.58 -38.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992856689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.920 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds