Wall clock time and date at job start Tue Mar 31 2020 22:40:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86804 * 119.99921 * 2 1 4 4 H 1.48493 * 109.47277 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46653 * 299.99767 * 3 2 1 6 6 H 1.48499 * 109.47283 * 59.99597 * 3 2 1 7 7 C 1.38810 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00094 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00212 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00564 * 179.97438 * 9 7 2 11 11 H 1.09002 * 108.17262 * 32.13034 * 10 9 7 12 12 C 1.51494 * 108.27674 * 275.00046 * 10 9 7 13 13 C 1.52672 * 110.81451 * 191.85410 * 12 10 9 14 14 C 1.52845 * 108.58004 * 60.04407 * 13 12 10 15 15 C 1.52900 * 109.68723 * 294.87886 * 14 13 12 16 16 H 1.09002 * 111.17141 * 289.44441 * 15 14 13 17 17 C 1.54799 * 107.41758 * 167.41714 * 15 14 13 18 18 N 1.46938 * 107.28274 * 262.33228 * 17 15 14 19 19 C 1.34772 * 125.40387 * 178.40396 * 18 17 15 20 20 O 1.21589 * 120.00078 * 180.02562 * 19 18 17 21 21 C 1.47525 * 120.00247 * 0.04148 * 19 18 17 22 22 C 1.36781 * 126.92776 * 179.71061 * 21 19 18 23 23 C 1.41408 * 103.83966 * 179.87224 * 22 21 19 24 24 Cl 1.73595 * 126.73091 * 180.13656 * 23 22 21 25 25 N 1.30231 * 106.54808 * 0.39211 * 23 22 21 26 26 O 1.20890 * 111.95791 * 359.74428 * 25 23 22 27 27 C 1.47231 * 109.19038 * 358.43750 * 18 17 15 28 28 C 1.50162 * 108.19731 * 148.40810 * 10 9 7 29 29 H 1.08995 * 108.27337 * 280.02914 * 28 10 9 30 30 H 0.96994 * 120.00457 * 0.02562 * 1 2 3 31 31 H 0.97000 * 119.99769 * 359.97438 * 9 7 2 32 32 H 1.09001 * 109.20904 * 71.51383 * 12 10 9 33 33 H 1.08993 * 109.21263 * 312.20002 * 12 10 9 34 34 H 1.09002 * 109.62262 * 300.31672 * 13 12 10 35 35 H 1.09004 * 109.76760 * 179.86205 * 13 12 10 36 36 H 1.08999 * 109.43561 * 174.80397 * 14 13 12 37 37 H 1.09007 * 109.39319 * 54.91647 * 14 13 12 38 38 H 1.08995 * 109.88311 * 142.90427 * 17 15 14 39 39 H 1.09004 * 109.87653 * 21.74850 * 17 15 14 40 40 H 1.08002 * 128.08585 * 359.97438 * 22 21 19 41 41 H 1.09002 * 110.24231 * 100.45927 * 27 18 17 42 42 H 1.08998 * 110.24289 * 222.36280 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2021 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0582 -3.6568 0.0005 11 1 2.9877 -3.5127 0.5513 12 6 2.4043 -4.0055 -1.4325 13 6 2.9054 -5.4440 -1.5349 14 6 1.8025 -6.3802 -1.0416 15 6 1.5498 -6.1390 0.4470 16 1 2.3829 -6.4986 1.0510 17 6 0.2325 -6.8632 0.8167 18 7 -0.8400 -5.8591 0.7897 19 6 -2.1441 -6.1031 1.0267 20 8 -2.9511 -5.1950 0.9778 21 6 -2.5923 -7.4719 1.3458 22 6 -3.8711 -7.8762 1.6144 23 6 -3.7450 -9.2653 1.8467 24 17 -5.0230 -10.3726 2.2391 25 7 -2.4812 -9.5503 1.7140 26 8 -1.8243 -8.5740 1.4370 27 6 -0.2640 -4.5444 0.4619 28 6 1.2403 -4.6704 0.7478 29 1 1.3894 -4.5098 1.8155 30 1 -0.4850 0.8400 -0.0004 31 1 0.3557 -2.3881 0.0005 32 1 3.1812 -3.3290 -1.7886 33 1 1.5166 -3.8899 -2.0542 34 1 3.7939 -5.5671 -0.9157 35 1 3.1468 -5.6774 -2.5719 36 1 2.1096 -7.4148 -1.1945 37 1 0.8869 -6.1871 -1.6007 38 1 0.3132 -7.2927 1.8152 39 1 0.0241 -7.6477 0.0892 40 1 -4.7681 -7.2752 1.6411 41 1 -0.4298 -4.3117 -0.5900 42 1 -0.7043 -3.7720 1.0924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000992856689.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:06 Heat of formation + Delta-G solvation = 21.269316 kcal Electronic energy + Delta-G solvation = -27573.808239 eV Core-core repulsion = 23582.696830 eV Total energy + Delta-G solvation = -3991.111409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.40953 -41.76350 -39.97509 -38.29313 -37.11610 -35.56970 -34.94012 -33.60735 -33.34770 -31.85271 -30.46605 -28.19260 -26.66180 -25.60764 -24.85350 -24.21681 -22.81781 -22.17198 -21.65139 -19.71176 -19.59094 -19.22710 -18.64653 -17.65832 -17.35591 -17.10767 -16.66749 -16.20559 -15.93640 -15.45195 -15.25135 -15.04857 -14.93159 -14.72154 -14.25682 -14.09987 -13.93912 -13.90174 -13.62145 -13.45312 -13.18936 -12.84220 -12.75272 -12.44014 -12.30028 -12.20485 -12.07665 -11.94827 -11.87867 -11.59606 -11.29335 -11.27105 -11.17374 -11.08416 -10.95539 -10.70900 -9.85330 -8.96839 -7.90569 -5.18784 -0.55675 0.23282 0.54935 1.15932 1.48155 1.48272 1.58125 1.69213 1.86250 2.57793 2.88891 3.35781 3.42862 3.43034 3.48797 3.62822 3.71276 3.78993 4.14252 4.18274 4.29987 4.32782 4.41316 4.49585 4.50357 4.65346 4.66451 4.79989 4.82711 4.90445 4.95516 5.08860 5.12400 5.24449 5.33598 5.39666 5.47976 5.56964 5.63504 5.77434 6.15769 6.31730 6.49441 6.71831 7.37560 8.14718 8.35235 9.32975 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018341 B = 0.002718 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.229070 B =10298.712467 C =11564.624544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.967 3.033 4 H -0.264 1.264 5 H -0.298 1.298 6 H -0.297 1.297 7 C -0.230 4.230 8 H 0.078 0.922 9 N -0.744 5.744 10 C 0.188 3.812 11 H 0.046 0.954 12 C -0.123 4.123 13 C -0.108 4.108 14 C -0.109 4.109 15 C -0.075 4.075 16 H 0.128 0.872 17 C 0.092 3.908 18 N -0.595 5.595 19 C 0.610 3.390 20 O -0.547 6.547 21 C -0.063 4.063 22 C -0.130 4.130 23 C 0.051 3.949 24 Cl 0.049 6.951 25 N -0.337 5.337 26 O 0.147 5.853 27 C 0.127 3.873 28 C -0.082 4.082 29 H 0.071 0.929 30 H 0.248 0.752 31 H 0.373 0.627 32 H 0.042 0.958 33 H 0.035 0.965 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.209 0.791 41 H 0.058 0.942 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -24.518 2.382 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.271 4.271 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.225 1.225 6 H -0.225 1.225 7 C -0.362 4.362 8 H 0.096 0.904 9 N -0.385 5.385 10 C 0.080 3.920 11 H 0.064 0.936 12 C -0.163 4.163 13 C -0.146 4.146 14 C -0.146 4.146 15 C -0.094 4.094 16 H 0.146 0.854 17 C -0.029 4.029 18 N -0.326 5.326 19 C 0.396 3.604 20 O -0.426 6.426 21 C -0.129 4.129 22 C -0.153 4.153 23 C -0.132 4.132 24 Cl 0.077 6.923 25 N -0.037 5.037 26 O 0.069 5.931 27 C 0.005 3.995 28 C -0.102 4.102 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.206 0.794 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.066 0.934 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.226 0.774 41 H 0.076 0.924 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.087 -25.177 2.544 25.329 hybrid contribution -1.172 2.138 -0.029 2.438 sum -2.258 -23.040 2.515 23.286 Atomic orbital electron populations 1.69830 1.06620 1.25707 1.60114 1.25515 0.96241 1.00975 1.04400 0.85151 0.78425 0.80342 0.76345 1.18780 1.22531 1.22504 1.19669 0.91424 0.85217 1.39931 0.90417 1.42956 1.05618 1.01087 1.88889 1.19394 0.94008 0.84320 0.94236 0.93618 1.21707 0.99683 0.97309 0.97601 1.21385 0.98655 0.92851 1.01737 1.21601 0.98591 1.00713 0.93695 1.21977 0.97045 0.91678 0.98663 0.85430 1.22787 0.85456 0.90672 1.03998 1.48361 1.06064 1.11766 1.66428 1.16248 0.81707 0.84340 0.78074 1.90928 1.53627 1.43990 1.54006 1.23750 0.91537 0.89385 1.08189 1.22986 0.99070 0.92546 1.00668 1.24148 0.90441 0.91854 1.06712 1.98438 1.42312 1.59746 1.91831 1.73829 1.05342 1.09040 1.15526 1.85118 1.33106 1.11145 1.63716 1.21776 0.94273 0.83501 0.99977 1.21210 0.92038 0.96039 1.00922 0.91052 0.94312 0.79382 0.93874 0.94648 0.90487 0.91191 0.88445 0.93354 0.88800 0.88396 0.77407 0.92419 0.93024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 2 C -0.08 -4.55 5.50 84.86 0.47 -4.09 16 3 Si 0.97 46.31 29.55 68.60 2.03 48.33 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 6 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 7 C -0.23 -12.47 9.86 84.03 0.83 -11.64 16 8 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 9 N -0.74 -36.04 4.90 -329.68 -1.61 -37.66 16 10 C 0.19 6.70 2.55 43.58 0.11 6.81 16 11 H 0.05 1.65 8.01 -2.39 -0.02 1.63 16 12 C -0.12 -3.92 5.41 29.99 0.16 -3.76 16 13 C -0.11 -2.27 5.94 30.43 0.18 -2.09 16 14 C -0.11 -1.92 4.80 30.51 0.15 -1.77 16 15 C -0.07 -1.37 3.28 -10.19 -0.03 -1.40 16 16 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 17 C 0.09 1.65 5.04 86.91 0.44 2.09 16 18 N -0.59 -15.98 3.33 -817.83 -2.72 -18.70 16 19 C 0.61 17.70 7.84 86.69 0.68 18.38 16 20 O -0.55 -20.50 17.21 -4.00 -0.07 -20.56 16 21 C -0.06 -1.40 7.08 24.38 0.17 -1.23 16 22 C -0.13 -2.52 10.96 22.71 0.25 -2.27 16 23 C 0.05 0.96 7.97 85.71 0.68 1.64 16 24 Cl 0.05 0.74 29.33 -2.72 -0.08 0.66 16 25 N -0.34 -6.88 12.05 -51.02 -0.61 -7.49 16 26 O 0.15 2.87 8.98 65.82 0.59 3.46 16 27 C 0.13 4.27 4.73 86.46 0.41 4.68 16 28 C -0.08 -2.36 2.52 -11.47 -0.03 -2.39 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 31 H 0.37 19.75 5.72 -92.71 -0.53 19.22 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.31 16 36 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.05 1.03 8.00 -2.38 -0.02 1.01 16 38 H 0.09 1.37 7.84 -2.39 -0.02 1.35 16 39 H 0.10 1.42 7.23 -2.38 -0.02 1.40 16 40 H 0.21 3.36 8.06 -2.91 -0.02 3.33 16 41 H 0.06 2.16 7.91 -2.39 -0.02 2.14 16 42 H 0.05 2.13 7.68 -2.39 -0.02 2.11 16 Total: -1.00 -69.40 356.77 2.79 -66.61 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.53 Total: 22.36 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 4.46 Total: 2.97 kcal Atomic # 7 Polarization: -119.17 SS G_CDS: -4.67 Total: -123.84 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: 0.52 Total: -17.10 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 17 Polarization: 0.74 SS G_CDS: -0.08 Total: 0.66 kcal Total: -69.40 2.79 -66.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000992856689.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.880 kcal (2) G-P(sol) polarization free energy of solvation -69.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds