Wall clock time and date at job start Tue Mar 31 2020 22:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00197 * 2 1 4 4 H 1.48499 * 109.46914 * 274.35181 * 3 2 1 5 5 H 1.48500 * 109.46920 * 34.34886 * 3 2 1 6 6 H 1.48490 * 109.47281 * 154.35051 * 3 2 1 7 7 C 1.38820 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99739 * 162.59634 * 7 2 1 9 9 N 1.36936 * 119.99826 * 342.59806 * 7 2 1 10 10 C 1.46929 * 120.63152 * 152.28433 * 9 7 2 11 11 C 1.53186 * 108.77579 * 126.41108 * 10 9 7 12 12 C 1.53043 * 109.31142 * 54.63820 * 11 10 9 13 13 C 1.52999 * 109.45830 * 178.62795 * 12 11 10 14 14 N 1.46504 * 115.55193 * 34.44695 * 13 12 11 15 15 C 1.34779 * 119.99784 * 180.02562 * 14 13 12 16 16 O 1.21580 * 120.00064 * 359.97438 * 15 14 13 17 17 C 1.47519 * 119.99729 * 179.97438 * 15 14 13 18 18 C 1.36780 * 126.92815 * 179.97438 * 17 15 14 19 19 C 1.41405 * 103.83838 * 179.97438 * 18 17 15 20 20 Cl 1.73611 * 126.72663 * 180.02562 * 19 18 17 21 21 N 1.30226 * 106.55373 * 359.97438 * 19 18 17 22 22 O 1.20886 * 111.95354 * 359.72353 * 21 19 18 23 23 C 1.53002 * 117.49993 * 248.77225 * 13 12 11 24 24 C 1.53004 * 117.49697 * 180.11284 * 13 12 11 25 25 C 1.53042 * 109.53916 * 298.63339 * 12 11 10 26 26 C 1.46930 * 120.63181 * 332.30826 * 9 7 2 27 27 H 0.96992 * 120.00302 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.58168 * 6.63015 * 10 9 7 29 29 H 1.08992 * 109.58772 * 246.20339 * 10 9 7 30 30 H 1.09006 * 109.49920 * 294.69081 * 11 10 9 31 31 H 1.08996 * 109.52418 * 174.60647 * 11 10 9 32 32 H 1.08995 * 109.46077 * 58.65356 * 12 11 10 33 33 H 0.96995 * 119.99614 * 359.97438 * 14 13 12 34 34 H 1.07999 * 128.08197 * 359.97425 * 18 17 15 35 35 H 1.09001 * 117.49834 * 0.02562 * 23 13 12 36 36 H 1.08997 * 117.50206 * 145.01896 * 23 13 12 37 37 H 1.09003 * 117.49890 * 214.98053 * 24 13 12 38 38 H 1.08997 * 117.50044 * 359.97438 * 24 13 12 39 39 H 1.08993 * 109.49848 * 181.31524 * 25 12 11 40 40 H 1.09003 * 109.49706 * 301.41661 * 25 12 11 41 41 H 1.09000 * 109.58277 * 353.37323 * 26 9 7 42 42 H 1.08996 * 109.58568 * 113.79733 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4057 2.0994 -1.3960 5 1 1.4966 2.6243 0.7900 6 1 3.5906 1.4153 0.6060 7 6 2.0103 -1.2022 -0.0005 8 1 3.0532 -1.2234 -0.2803 9 7 1.3726 -2.3611 0.3536 10 6 1.8187 -3.6547 -0.1815 11 6 2.0747 -4.6103 0.9881 12 6 0.8198 -4.6901 1.8605 13 6 1.0601 -5.6700 3.0107 14 7 2.4261 -5.7012 3.5392 15 6 2.7374 -6.5327 4.5533 16 8 1.8845 -7.2564 5.0297 17 6 4.1130 -6.5645 5.0851 18 6 4.5822 -7.3471 6.1041 19 6 5.9460 -6.9878 6.2061 20 17 7.1085 -7.6314 7.3234 21 7 6.1596 -6.0802 5.2970 22 8 5.1615 -5.8340 4.6609 23 6 0.2792 -6.9856 2.9927 24 6 -0.0855 -5.8924 4.0002 25 6 0.5026 -3.3050 2.4289 26 6 0.2288 -2.3346 1.2756 27 1 -0.4850 0.8399 0.0004 28 1 2.7390 -3.5174 -0.7492 29 1 1.0458 -4.0685 -0.8290 30 1 2.9091 -4.2405 1.5842 31 1 2.3138 -5.6015 0.6031 32 1 -0.0199 -5.0363 1.2579 33 1 3.1066 -5.1241 3.1588 34 1 4.0381 -8.0706 6.6931 35 1 -0.4053 -7.1533 2.1612 36 1 0.7817 -7.8744 3.3744 37 1 0.1772 -6.0623 5.0443 38 1 -1.0102 -5.3403 3.8320 39 1 -0.3776 -3.3672 3.0687 40 1 1.3519 -2.9475 3.0112 41 1 0.1001 -1.3263 1.6691 42 1 -0.6738 -2.6407 0.7469 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000324498.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:11 Heat of formation + Delta-G solvation = 62.510427 kcal Electronic energy + Delta-G solvation = -27344.118728 eV Core-core repulsion = 23354.795668 eV Total energy + Delta-G solvation = -3989.323060 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -46.41064 -41.69785 -39.47124 -38.29264 -37.50988 -35.02722 -34.56748 -34.52022 -32.86687 -32.06029 -31.38474 -27.42717 -25.91712 -24.86857 -24.29653 -24.04788 -22.94695 -22.40481 -21.30220 -20.29537 -20.16112 -19.20006 -18.69393 -17.70123 -16.98643 -16.70655 -16.64436 -16.02533 -15.76231 -15.46196 -15.23311 -15.06261 -14.87979 -14.80620 -14.52487 -14.32283 -13.91561 -13.90268 -13.59973 -13.07067 -12.96284 -12.70497 -12.55119 -12.32634 -12.25374 -12.18142 -11.94063 -11.91454 -11.69809 -11.51946 -11.33154 -11.26415 -11.10663 -11.05836 -10.82872 -10.49992 -9.68455 -8.63073 -7.84030 -5.27615 -0.53134 0.23259 0.56927 1.27430 1.47439 1.49988 1.59039 1.69312 1.96131 2.53995 2.94736 2.96843 3.30326 3.46686 3.53152 3.61190 3.74442 3.76809 3.90068 4.04430 4.17226 4.37882 4.51212 4.52099 4.60035 4.65041 4.79362 4.88198 4.97289 5.05178 5.09978 5.21796 5.27905 5.29875 5.38237 5.41842 5.43952 5.60393 5.70607 5.83272 6.16717 6.43592 6.61164 6.80919 7.19790 7.92476 8.42485 9.22030 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.002865 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.338420 B = 9772.142506 C =11315.005457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.961 3.039 4 H -0.288 1.288 5 H -0.294 1.294 6 H -0.270 1.270 7 C -0.258 4.258 8 H 0.066 0.934 9 N -0.610 5.610 10 C 0.140 3.860 11 C -0.117 4.117 12 C -0.031 4.031 13 C 0.103 3.897 14 N -0.667 5.667 15 C 0.608 3.392 16 O -0.521 6.521 17 C -0.072 4.072 18 C -0.124 4.124 19 C 0.047 3.953 20 Cl 0.047 6.953 21 N -0.345 5.345 22 O 0.135 5.865 23 C -0.164 4.164 24 C -0.174 4.174 25 C -0.118 4.118 26 C 0.175 3.825 27 H 0.248 0.752 28 H 0.054 0.946 29 H 0.015 0.985 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.418 0.582 34 H 0.217 0.783 35 H 0.110 0.890 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.050 0.950 42 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.473 -18.240 12.774 23.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.789 3.211 4 H -0.215 1.215 5 H -0.221 1.221 6 H -0.195 1.195 7 C -0.388 4.388 8 H 0.084 0.916 9 N -0.333 5.333 10 C 0.015 3.985 11 C -0.156 4.156 12 C -0.050 4.050 13 C 0.016 3.984 14 N -0.317 5.317 15 C 0.392 3.608 16 O -0.398 6.398 17 C -0.138 4.138 18 C -0.147 4.147 19 C -0.136 4.136 20 Cl 0.074 6.926 21 N -0.045 5.045 22 O 0.058 5.942 23 C -0.202 4.202 24 C -0.213 4.213 25 C -0.157 4.157 26 C 0.050 3.950 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.033 0.967 30 H 0.079 0.921 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.257 0.743 34 H 0.233 0.767 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges 7.993 -17.979 12.842 23.496 hybrid contribution 0.231 1.025 0.136 1.060 sum 8.224 -16.954 12.978 22.880 Atomic orbital electron populations 1.70173 1.06572 1.25662 1.55699 1.25721 0.95958 1.01294 1.01669 0.85362 0.78314 0.80115 0.77276 1.21494 1.22083 1.19473 1.19505 0.92961 0.86165 1.40190 0.91609 1.44332 1.35979 1.02174 1.50859 1.21053 0.97352 0.85865 0.94262 1.21915 0.96865 0.99591 0.97214 1.20632 0.99063 0.92582 0.92764 1.20837 0.79487 0.99938 0.98111 1.45306 1.12139 1.40426 1.33785 1.16448 0.83384 0.80904 0.80068 1.90849 1.46326 1.42641 1.60031 1.24184 0.91074 0.98344 1.00194 1.23006 0.91452 1.01811 0.98428 1.24283 0.92805 0.98721 0.97768 1.98438 1.55819 1.82873 1.55422 1.73888 1.07722 1.15879 1.07041 1.85088 1.12702 1.50276 1.46119 1.23496 1.02059 0.92975 1.01709 1.23400 0.98368 1.02348 0.97137 1.22025 1.00845 0.94919 0.97926 1.20599 0.87756 0.97661 0.89000 0.94247 0.92793 0.96667 0.92134 0.89816 0.89652 0.74338 0.76666 0.87223 0.88024 0.88307 0.87788 0.91456 0.93224 0.93127 0.98502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 11.19 21.65 0.24 -54.30 16 2 C -0.05 -2.82 4.91 84.86 0.42 -2.40 16 3 Si 0.96 44.38 29.59 68.60 2.03 46.41 16 4 H -0.29 -13.19 7.11 99.48 0.71 -12.49 16 5 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.26 -13.78 9.59 84.04 0.81 -12.97 16 8 H 0.07 3.43 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -29.04 2.99 -699.10 -2.09 -31.13 16 10 C 0.14 5.30 6.52 86.36 0.56 5.86 16 11 C -0.12 -3.28 4.83 30.67 0.15 -3.13 16 12 C -0.03 -0.86 2.28 -10.77 -0.02 -0.88 16 13 C 0.10 2.39 2.48 3.60 0.01 2.39 16 14 N -0.67 -14.33 5.38 -426.06 -2.29 -16.62 16 15 C 0.61 13.01 7.52 86.69 0.65 13.67 16 16 O -0.52 -12.77 12.39 -3.97 -0.05 -12.82 16 17 C -0.07 -1.38 7.29 24.38 0.18 -1.20 16 18 C -0.12 -2.02 10.96 22.71 0.25 -1.77 16 19 C 0.05 0.86 7.97 85.71 0.68 1.55 16 20 Cl 0.05 0.70 29.33 -2.72 -0.08 0.62 16 21 N -0.34 -7.61 12.05 -51.03 -0.61 -8.23 16 22 O 0.14 2.83 11.04 65.78 0.73 3.55 16 23 C -0.16 -3.52 9.37 30.62 0.29 -3.24 16 24 C -0.17 -4.00 8.91 30.62 0.27 -3.73 16 25 C -0.12 -3.99 5.22 30.67 0.16 -3.83 16 26 C 0.18 8.02 5.31 86.36 0.46 8.48 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 29 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 1.67 6.50 -2.38 -0.02 1.66 16 31 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.09 2.34 7.90 -2.39 -0.02 2.32 16 33 H 0.42 8.51 6.48 -92.71 -0.60 7.91 16 34 H 0.22 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.11 2.08 8.05 -2.39 -0.02 2.06 16 36 H 0.10 2.32 6.37 -2.39 -0.02 2.30 16 37 H 0.10 2.46 6.37 -2.39 -0.02 2.44 16 38 H 0.10 2.27 7.60 -2.39 -0.02 2.26 16 39 H 0.07 2.06 7.24 -2.39 -0.02 2.05 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 41 H 0.05 2.68 6.04 -2.39 -0.01 2.67 16 42 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 Total: -1.00 -62.81 355.74 3.20 -59.61 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 0.47 Total: 14.12 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: 4.86 Total: -1.21 kcal Atomic # 7 Polarization: -105.52 SS G_CDS: -4.76 Total: -110.28 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.68 Total: -9.27 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: 0.70 SS G_CDS: -0.08 Total: 0.62 kcal Total: -62.81 3.20 -59.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000324498.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.125 kcal (2) G-P(sol) polarization free energy of solvation -62.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds