Wall clock time and date at job start Tue Mar 31 2020 22:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48505 * 109.47293 * 275.07130 * 3 2 1 5 5 H 1.48501 * 109.47145 * 35.07125 * 3 2 1 6 6 H 1.48496 * 109.47209 * 155.07139 * 3 2 1 7 7 C 1.38813 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99769 * 340.38330 * 7 2 1 9 9 N 1.36935 * 120.00424 * 160.38155 * 7 2 1 10 10 C 1.46865 * 120.47431 * 152.50160 * 9 7 2 11 11 C 1.53304 * 109.10292 * 127.32836 * 10 9 7 12 12 C 1.52886 * 108.94864 * 54.10553 * 11 10 9 13 13 H 1.09007 * 109.52605 * 57.80183 * 12 11 10 14 14 C 1.53269 * 109.16542 * 297.88170 * 12 11 10 15 15 H 1.09008 * 109.46928 * 303.33240 * 14 12 11 16 16 C 1.52815 * 109.17355 * 183.51675 * 14 12 11 17 17 C 1.53141 * 109.27327 * 61.80269 * 16 14 12 18 18 C 1.53128 * 109.61727 * 299.15804 * 17 16 14 19 19 N 1.46717 * 110.47521 * 178.52784 * 12 11 10 20 20 C 1.34777 * 120.84120 * 354.08590 * 19 12 11 21 21 O 1.21584 * 119.99879 * 355.34078 * 20 19 12 22 22 C 1.47515 * 119.99916 * 175.34701 * 20 19 12 23 23 C 1.36791 * 126.92754 * 186.40384 * 22 20 19 24 24 C 1.41411 * 103.83411 * 179.87715 * 23 22 20 25 25 Cl 1.73605 * 126.72128 * 180.13930 * 24 23 22 26 26 N 1.30218 * 106.55313 * 0.38562 * 24 23 22 27 27 O 1.20886 * 111.95916 * 359.75223 * 26 24 23 28 28 C 1.46655 * 120.40584 * 332.34940 * 9 7 2 29 29 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.52667 * 7.44026 * 10 9 7 31 31 H 1.08997 * 109.53461 * 247.22264 * 10 9 7 32 32 H 1.09000 * 109.56052 * 294.26297 * 11 10 9 33 33 H 1.09000 * 109.64575 * 174.00211 * 11 10 9 34 34 H 1.08997 * 109.50911 * 181.74852 * 16 14 12 35 35 H 1.09001 * 109.50304 * 301.87360 * 16 14 12 36 36 H 1.08993 * 109.45388 * 179.11059 * 17 16 14 37 37 H 1.09005 * 109.41656 * 59.18292 * 17 16 14 38 38 H 1.08998 * 109.54313 * 294.12983 * 18 17 16 39 39 H 1.09001 * 109.54548 * 173.86811 * 18 17 16 40 40 H 1.07991 * 128.08078 * 359.97338 * 23 22 20 41 41 H 1.08993 * 109.38960 * 113.58088 * 28 9 7 42 42 H 1.09001 * 109.76983 * 353.13717 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3904 2.1084 -1.3946 5 1 1.5052 2.6194 0.8045 6 1 3.5971 1.4117 0.5901 7 6 2.0103 -1.2021 -0.0005 8 1 1.5173 -2.1105 0.3131 9 7 3.3201 -1.2364 -0.3987 10 6 4.2306 -2.2637 0.1233 11 6 4.9123 -2.9739 -1.0519 12 6 5.5762 -1.9272 -1.9469 13 1 6.2904 -1.3476 -1.3618 14 6 4.5004 -0.9937 -2.5129 15 1 3.7536 -1.5816 -3.0469 16 6 5.1522 -0.0023 -3.4760 17 6 5.7821 -0.7700 -4.6419 18 6 6.8577 -1.7212 -4.1098 19 7 6.2700 -2.5744 -3.0660 20 6 6.3657 -3.9170 -3.1360 21 8 5.9488 -4.6045 -2.2240 22 6 6.9763 -4.5522 -4.3191 23 6 7.0366 -5.8909 -4.5940 24 6 7.7145 -5.9513 -5.8335 25 17 8.1080 -7.3833 -6.7326 26 7 7.9905 -4.7229 -6.1657 27 8 7.5919 -3.9317 -5.3432 28 6 3.8312 -0.2490 -1.3551 29 1 -0.4850 0.8400 0.0004 30 1 3.6649 -2.9885 0.7086 31 1 4.9861 -1.7948 0.7537 32 1 4.1681 -3.5258 -1.6261 33 1 5.6674 -3.6637 -0.6751 34 1 4.3967 0.6842 -3.8581 35 1 5.9243 0.5605 -2.9515 36 1 6.2342 -0.0645 -5.3389 37 1 5.0115 -1.3446 -5.1559 38 1 7.6795 -1.1428 -3.6878 39 1 7.2287 -2.3440 -4.9237 40 1 6.6542 -6.7100 -4.0032 41 1 4.5610 0.3909 -0.8593 42 1 3.0084 0.3568 -1.7347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021718290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:42 Heat of formation + Delta-G solvation = 80.290064 kcal Electronic energy + Delta-G solvation = -28320.784910 eV Core-core repulsion = 24332.232833 eV Total energy + Delta-G solvation = -3988.552077 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.72 seconds Orbital eigenvalues (eV) -45.58865 -40.76361 -38.17686 -37.55528 -36.28045 -34.22171 -33.28972 -33.04143 -32.07397 -30.59937 -29.84883 -25.98681 -25.68880 -24.09655 -23.65978 -23.02696 -22.39839 -21.18676 -19.97754 -19.77217 -18.36962 -17.86455 -16.94132 -16.78105 -16.33911 -15.44511 -15.36009 -15.10895 -14.65281 -14.44991 -14.12633 -14.07922 -13.74895 -13.33598 -13.16946 -13.10080 -12.84677 -12.78067 -12.58092 -12.18585 -12.05463 -11.59245 -11.49237 -11.19318 -11.15540 -10.94837 -10.85797 -10.53944 -10.44547 -10.15999 -10.09734 -10.04680 -9.79087 -9.50788 -9.43696 -8.71513 -8.52150 -6.96299 -5.94880 -3.31474 0.35812 0.99715 1.39317 2.12437 2.68998 2.86643 3.28820 3.46565 3.48459 3.75103 4.13763 4.29721 4.51003 4.56832 4.72209 4.81740 4.88086 5.05529 5.09304 5.25373 5.27756 5.38455 5.39811 5.52868 5.66678 5.73191 5.82480 5.97299 6.00591 6.09006 6.12101 6.19283 6.27620 6.43306 6.57175 6.69055 6.70748 6.78027 6.98584 7.14043 7.43575 7.83181 7.97389 8.33446 8.94430 9.71673 10.08044 11.21207 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.002991 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.506242 B = 9360.049842 C = 9943.142604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.882 3.118 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.268 1.268 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.606 5.606 10 C 0.144 3.856 11 C -0.129 4.129 12 C 0.157 3.843 13 H 0.075 0.925 14 C -0.115 4.115 15 H 0.079 0.921 16 C -0.119 4.119 17 C -0.131 4.131 18 C 0.094 3.906 19 N -0.589 5.589 20 C 0.599 3.401 21 O -0.494 6.494 22 C -0.061 4.061 23 C -0.141 4.141 24 C 0.055 3.945 25 Cl 0.030 6.970 26 N -0.335 5.335 27 O 0.130 5.870 28 C 0.137 3.863 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.022 0.978 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.194 0.806 41 H 0.027 0.973 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.336 -7.850 -12.452 23.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.712 3.288 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.193 1.193 7 C -0.387 4.387 8 H 0.104 0.896 9 N -0.329 5.329 10 C 0.018 3.982 11 C -0.168 4.168 12 C 0.056 3.944 13 H 0.093 0.907 14 C -0.137 4.137 15 H 0.097 0.903 16 C -0.157 4.157 17 C -0.170 4.170 18 C -0.029 4.029 19 N -0.321 5.321 20 C 0.383 3.617 21 O -0.369 6.369 22 C -0.127 4.127 23 C -0.164 4.164 24 C -0.128 4.128 25 Cl 0.058 6.942 26 N -0.040 5.040 27 O 0.058 5.942 28 C 0.010 3.990 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.212 0.788 41 H 0.045 0.955 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 18.590 -7.729 -13.022 23.977 hybrid contribution 0.129 0.384 0.111 0.420 sum 18.719 -7.346 -12.911 23.897 Atomic orbital electron populations 1.69827 1.05730 1.26493 1.53204 1.25296 0.95240 0.97558 0.99584 0.86960 0.80188 0.84738 0.76899 1.21692 1.23206 1.19342 1.18960 0.84528 0.94703 1.40495 0.89643 1.44329 1.08400 1.32987 1.47218 1.21111 0.92362 0.91237 0.93484 1.22603 1.00385 0.96332 0.97486 1.21436 0.93059 0.94422 0.85447 0.90673 1.22144 0.96872 0.96900 0.97736 0.90293 1.21573 1.00176 0.98009 0.95918 1.21896 0.98306 0.98359 0.98403 1.22256 0.96286 0.93848 0.90507 1.48244 1.54280 1.04320 1.25213 1.16729 0.79322 0.82465 0.83185 1.90949 1.47890 1.63152 1.34909 1.24668 1.02229 0.92795 0.92968 1.22753 1.01211 0.97044 0.95380 1.24034 1.03879 0.89954 0.94925 1.98428 1.92639 1.29820 1.73304 1.73818 1.16566 1.00418 1.13155 1.85183 1.54017 1.31100 1.23907 1.21290 0.96979 0.91892 0.88823 0.92790 0.91450 0.96038 0.91192 0.89321 0.91184 0.91745 0.90451 0.91338 0.90354 0.88564 0.78845 0.95490 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.74 13.97 55.49 0.78 -26.96 16 2 C 0.02 0.63 5.24 -17.43 -0.09 0.53 16 3 Si 0.88 21.87 24.33 -169.99 -4.14 17.73 16 4 H -0.29 -6.85 6.72 56.52 0.38 -6.47 16 5 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 6 H -0.27 -6.47 6.39 56.52 0.36 -6.10 16 7 C -0.26 -7.15 10.03 -15.06 -0.15 -7.30 16 8 H 0.09 2.55 8.05 -52.48 -0.42 2.12 16 9 N -0.61 -14.09 2.77 -172.60 -0.48 -14.57 16 10 C 0.14 2.83 6.50 -3.69 -0.02 2.81 16 11 C -0.13 -2.21 3.83 -26.63 -0.10 -2.31 16 12 C 0.16 2.37 2.63 -67.73 -0.18 2.19 16 13 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 14 C -0.12 -1.89 2.21 -90.54 -0.20 -2.09 16 15 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 16 C -0.12 -1.52 5.24 -26.75 -0.14 -1.66 16 17 C -0.13 -1.33 6.07 -26.59 -0.16 -1.49 16 18 C 0.09 0.92 6.33 -3.67 -0.02 0.90 16 19 N -0.59 -7.47 2.97 -166.55 -0.49 -7.97 16 20 C 0.60 7.91 7.59 -12.48 -0.09 7.81 16 21 O -0.49 -7.70 12.59 5.29 0.07 -7.63 16 22 C -0.06 -0.68 6.99 -36.33 -0.25 -0.94 16 23 C -0.14 -1.41 10.96 -38.90 -0.43 -1.84 16 24 C 0.06 0.57 7.97 -17.03 -0.14 0.43 16 25 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 26 N -0.34 -3.73 12.05 32.82 0.40 -3.34 16 27 O 0.13 1.37 7.76 15.55 0.12 1.49 16 28 C 0.14 2.82 3.49 -3.92 -0.01 2.81 16 29 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.07 1.35 7.92 -51.93 -0.41 0.93 16 31 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 1.34 7.46 -51.93 -0.39 0.95 16 33 H 0.09 1.47 6.13 -51.93 -0.32 1.15 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.87 3.86 -54.51 -0.21 0.66 16 40 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 41 H 0.03 0.55 6.90 -51.93 -0.36 0.19 16 42 H 0.08 1.72 4.52 -51.93 -0.23 1.49 16 LS Contribution 337.43 15.07 5.08 5.08 Total: -1.00 -30.78 337.43 -7.53 -38.31 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -5.35 Total: -0.73 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.00 Total: -0.15 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: 0.20 Total: -52.84 kcal Atomic # 8 Polarization: -6.33 SS G_CDS: 0.19 Total: -6.14 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.73 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.78 -7.53 -38.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.597 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.72 seconds