Wall clock time and date at job start Tue Mar 31 2020 22:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86798 * 119.99825 * 2 1 4 4 H 1.48505 * 109.47293 * 275.07130 * 3 2 1 5 5 H 1.48501 * 109.47145 * 35.07125 * 3 2 1 6 6 H 1.48496 * 109.47209 * 155.07139 * 3 2 1 7 7 C 1.38813 * 120.00365 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99769 * 340.38330 * 7 2 1 9 9 N 1.36935 * 120.00424 * 160.38155 * 7 2 1 10 10 C 1.46865 * 120.47431 * 152.50160 * 9 7 2 11 11 C 1.53304 * 109.10292 * 127.32836 * 10 9 7 12 12 C 1.52886 * 108.94864 * 54.10553 * 11 10 9 13 13 H 1.09007 * 109.52605 * 57.80183 * 12 11 10 14 14 C 1.53269 * 109.16542 * 297.88170 * 12 11 10 15 15 H 1.09008 * 109.46928 * 303.33240 * 14 12 11 16 16 C 1.52815 * 109.17355 * 183.51675 * 14 12 11 17 17 C 1.53141 * 109.27327 * 61.80269 * 16 14 12 18 18 C 1.53128 * 109.61727 * 299.15804 * 17 16 14 19 19 N 1.46717 * 110.47521 * 178.52784 * 12 11 10 20 20 C 1.34777 * 120.84120 * 354.08590 * 19 12 11 21 21 O 1.21584 * 119.99879 * 355.34078 * 20 19 12 22 22 C 1.47515 * 119.99916 * 175.34701 * 20 19 12 23 23 C 1.36791 * 126.92754 * 186.40384 * 22 20 19 24 24 C 1.41411 * 103.83411 * 179.87715 * 23 22 20 25 25 Cl 1.73605 * 126.72128 * 180.13930 * 24 23 22 26 26 N 1.30218 * 106.55313 * 0.38562 * 24 23 22 27 27 O 1.20886 * 111.95916 * 359.75223 * 26 24 23 28 28 C 1.46655 * 120.40584 * 332.34940 * 9 7 2 29 29 H 0.96996 * 120.00417 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.52667 * 7.44026 * 10 9 7 31 31 H 1.08997 * 109.53461 * 247.22264 * 10 9 7 32 32 H 1.09000 * 109.56052 * 294.26297 * 11 10 9 33 33 H 1.09000 * 109.64575 * 174.00211 * 11 10 9 34 34 H 1.08997 * 109.50911 * 181.74852 * 16 14 12 35 35 H 1.09001 * 109.50304 * 301.87360 * 16 14 12 36 36 H 1.08993 * 109.45388 * 179.11059 * 17 16 14 37 37 H 1.09005 * 109.41656 * 59.18292 * 17 16 14 38 38 H 1.08998 * 109.54313 * 294.12983 * 18 17 16 39 39 H 1.09001 * 109.54548 * 173.86811 * 18 17 16 40 40 H 1.07991 * 128.08078 * 359.97338 * 23 22 20 41 41 H 1.08993 * 109.38960 * 113.58088 * 28 9 7 42 42 H 1.09001 * 109.76983 * 353.13717 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.3904 2.1084 -1.3946 5 1 1.5052 2.6194 0.8045 6 1 3.5971 1.4117 0.5901 7 6 2.0103 -1.2021 -0.0005 8 1 1.5173 -2.1105 0.3131 9 7 3.3201 -1.2364 -0.3987 10 6 4.2306 -2.2637 0.1233 11 6 4.9123 -2.9739 -1.0519 12 6 5.5762 -1.9272 -1.9469 13 1 6.2904 -1.3476 -1.3618 14 6 4.5004 -0.9937 -2.5129 15 1 3.7536 -1.5816 -3.0469 16 6 5.1522 -0.0023 -3.4760 17 6 5.7821 -0.7700 -4.6419 18 6 6.8577 -1.7212 -4.1098 19 7 6.2700 -2.5744 -3.0660 20 6 6.3657 -3.9170 -3.1360 21 8 5.9488 -4.6045 -2.2240 22 6 6.9763 -4.5522 -4.3191 23 6 7.0366 -5.8909 -4.5940 24 6 7.7145 -5.9513 -5.8335 25 17 8.1080 -7.3833 -6.7326 26 7 7.9905 -4.7229 -6.1657 27 8 7.5919 -3.9317 -5.3432 28 6 3.8312 -0.2490 -1.3551 29 1 -0.4850 0.8400 0.0004 30 1 3.6649 -2.9885 0.7086 31 1 4.9861 -1.7948 0.7537 32 1 4.1681 -3.5258 -1.6261 33 1 5.6674 -3.6637 -0.6751 34 1 4.3967 0.6842 -3.8581 35 1 5.9243 0.5605 -2.9515 36 1 6.2342 -0.0645 -5.3389 37 1 5.0115 -1.3446 -5.1559 38 1 7.6795 -1.1428 -3.6878 39 1 7.2287 -2.3440 -4.9237 40 1 6.6542 -6.7100 -4.0032 41 1 4.5610 0.3909 -0.8593 42 1 3.0084 0.3568 -1.7347 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021718290.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:41 Heat of formation + Delta-G solvation = 60.511736 kcal Electronic energy + Delta-G solvation = -28321.642563 eV Core-core repulsion = 24332.232833 eV Total energy + Delta-G solvation = -3989.409730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.41269 -41.88300 -39.44514 -38.28275 -37.62308 -35.07180 -34.70242 -34.28557 -33.40245 -32.12360 -31.21448 -27.34675 -27.00666 -25.14223 -24.79006 -24.23843 -23.77759 -22.19414 -21.31993 -21.04556 -19.20910 -18.86970 -18.75912 -17.74262 -17.57849 -16.88929 -16.56232 -16.28300 -15.81906 -15.61618 -15.42923 -15.20456 -14.94750 -14.89180 -14.38837 -14.16597 -13.95660 -13.90408 -13.84428 -13.57172 -13.48244 -12.99064 -12.83743 -12.51883 -12.27623 -12.23945 -12.07471 -11.81266 -11.69984 -11.66801 -11.38702 -11.25337 -11.21151 -11.02153 -10.92830 -10.44886 -9.70858 -8.88997 -8.15135 -5.48558 -0.50822 0.25029 0.58842 1.19592 1.30999 1.43741 1.53071 1.71504 1.93091 2.43135 2.91651 3.05509 3.27874 3.36404 3.47792 3.73399 3.76111 3.81369 3.87706 4.03294 4.22551 4.27186 4.39467 4.48352 4.52628 4.57922 4.71026 4.74815 4.78425 4.81771 4.86348 4.99438 5.07459 5.15402 5.19805 5.30863 5.39203 5.47410 5.58303 5.87348 6.12394 6.13371 6.58641 6.83605 6.93348 7.63533 8.01625 9.05059 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023794 B = 0.002991 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.506242 B = 9360.049842 C = 9943.142604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.039 4.039 3 Si 0.951 3.049 4 H -0.270 1.270 5 H -0.314 1.314 6 H -0.251 1.251 7 C -0.251 4.251 8 H 0.044 0.956 9 N -0.622 5.622 10 C 0.141 3.859 11 C -0.113 4.113 12 C 0.164 3.836 13 H 0.095 0.905 14 C -0.107 4.107 15 H 0.049 0.951 16 C -0.116 4.116 17 C -0.125 4.125 18 C 0.092 3.908 19 N -0.588 5.588 20 C 0.599 3.401 21 O -0.525 6.525 22 C -0.068 4.068 23 C -0.131 4.131 24 C 0.052 3.948 25 Cl 0.045 6.955 26 N -0.344 5.344 27 O 0.138 5.862 28 C 0.132 3.868 29 H 0.261 0.739 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.065 0.935 35 H 0.085 0.915 36 H 0.110 0.890 37 H 0.055 0.945 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.208 0.792 41 H 0.044 0.956 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.013 -6.879 -14.139 27.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.608 5.608 2 C -0.234 4.234 3 Si 0.779 3.221 4 H -0.196 1.196 5 H -0.243 1.243 6 H -0.175 1.175 7 C -0.381 4.381 8 H 0.062 0.938 9 N -0.346 5.346 10 C 0.015 3.985 11 C -0.152 4.152 12 C 0.062 3.938 13 H 0.113 0.887 14 C -0.128 4.128 15 H 0.068 0.932 16 C -0.154 4.154 17 C -0.163 4.163 18 C -0.029 4.029 19 N -0.319 5.319 20 C 0.384 3.616 21 O -0.403 6.403 22 C -0.134 4.134 23 C -0.154 4.154 24 C -0.131 4.131 25 Cl 0.073 6.927 26 N -0.048 5.048 27 O 0.065 5.935 28 C 0.006 3.994 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.104 0.896 36 H 0.128 0.872 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.225 0.775 41 H 0.062 0.938 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 22.336 -6.772 -14.758 27.615 hybrid contribution -1.024 -0.085 0.591 1.186 sum 21.312 -6.857 -14.167 26.494 Atomic orbital electron populations 1.69979 1.07661 1.27285 1.55864 1.25990 0.95907 1.01357 1.00110 0.85835 0.79088 0.79445 0.77687 1.19634 1.24316 1.17523 1.18853 0.86526 0.93325 1.39374 0.93839 1.44449 1.07324 1.34339 1.48465 1.21250 0.92077 0.90384 0.94742 1.22373 0.99679 0.96510 0.96605 1.21202 0.93078 0.93525 0.85975 0.88700 1.21940 0.96721 0.97432 0.96706 0.93202 1.21579 1.00522 0.97253 0.96037 1.21879 0.98083 0.98634 0.97738 1.22517 0.96643 0.93699 0.90069 1.48219 1.53867 1.04524 1.25258 1.16858 0.78872 0.82443 0.83383 1.90924 1.49294 1.63791 1.36278 1.24225 1.03255 0.93003 0.92886 1.22988 1.00145 0.97092 0.95207 1.24160 1.03649 0.90223 0.95069 1.98437 1.92486 1.28878 1.72936 1.73794 1.16797 1.00894 1.13306 1.85164 1.53856 1.30869 1.23567 1.21362 0.96628 0.91700 0.89684 0.92974 0.93157 0.93976 0.94071 0.88348 0.91603 0.89607 0.87154 0.92590 0.87676 0.87577 0.77455 0.93805 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.21 13.97 21.65 0.30 -60.91 16 2 C -0.04 -2.32 5.24 84.86 0.44 -1.87 16 3 Si 0.95 45.61 24.33 68.60 1.67 47.28 16 4 H -0.27 -11.99 6.72 99.48 0.67 -11.32 16 5 H -0.31 -15.48 7.11 99.48 0.71 -14.77 16 6 H -0.25 -11.21 6.39 99.48 0.64 -10.57 16 7 C -0.25 -14.50 10.03 84.03 0.84 -13.66 16 8 H 0.04 2.80 8.05 -2.91 -0.02 2.77 16 9 N -0.62 -29.20 2.77 -699.97 -1.94 -31.14 16 10 C 0.14 5.54 6.50 86.41 0.56 6.10 16 11 C -0.11 -3.82 3.83 30.66 0.12 -3.70 16 12 C 0.16 4.58 2.63 45.00 0.12 4.70 16 13 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 14 C -0.11 -3.35 2.21 -10.74 -0.02 -3.37 16 15 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 16 C -0.12 -2.56 5.24 30.58 0.16 -2.40 16 17 C -0.13 -2.06 6.07 30.68 0.19 -1.87 16 18 C 0.09 1.43 6.33 86.31 0.55 1.98 16 19 N -0.59 -13.41 2.97 -799.10 -2.37 -15.78 16 20 C 0.60 14.82 7.59 86.69 0.66 15.48 16 21 O -0.53 -16.01 12.59 -3.98 -0.05 -16.06 16 22 C -0.07 -1.38 6.99 24.38 0.17 -1.21 16 23 C -0.13 -2.37 10.96 22.71 0.25 -2.12 16 24 C 0.05 0.95 7.97 85.71 0.68 1.63 16 25 Cl 0.04 0.67 29.33 -2.72 -0.08 0.59 16 26 N -0.34 -6.81 12.05 -51.04 -0.61 -7.42 16 27 O 0.14 2.54 7.76 65.83 0.51 3.05 16 28 C 0.13 5.26 3.49 86.37 0.30 5.56 16 29 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 30 H 0.05 2.10 7.92 -2.39 -0.02 2.08 16 31 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.04 1.62 7.46 -2.39 -0.02 1.60 16 33 H 0.10 3.18 6.13 -2.39 -0.01 3.17 16 34 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.11 1.51 3.86 -43.31 -0.17 1.34 16 40 H 0.21 3.04 8.06 -2.92 -0.02 3.02 16 41 H 0.04 1.63 6.90 -2.39 -0.02 1.61 16 42 H 0.05 2.28 4.52 -2.39 -0.01 2.27 16 Total: -1.00 -70.11 337.43 3.23 -66.88 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: 0.79 Total: 8.27 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: 5.02 Total: 5.24 kcal Atomic # 7 Polarization: -110.62 SS G_CDS: -4.63 Total: -115.25 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: 0.46 Total: -13.01 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 1.67 Total: 47.28 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -0.08 Total: 0.59 kcal Total: -70.11 3.23 -66.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718290.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.390 kcal (2) G-P(sol) polarization free energy of solvation -70.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.878 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds