Wall clock time and date at job start Tue Mar 31 2020 22:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48499 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46822 * 300.00252 * 3 2 1 6 6 H 1.48499 * 109.46950 * 59.99808 * 3 2 1 7 7 C 1.38820 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99702 * 197.04755 * 7 2 1 9 9 N 1.36928 * 120.00098 * 17.05116 * 7 2 1 10 10 C 1.46977 * 120.77506 * 207.61787 * 9 7 2 11 11 C 1.53091 * 108.62509 * 234.33047 * 10 9 7 12 12 C 1.53165 * 109.58035 * 304.65994 * 11 10 9 13 13 H 1.08999 * 110.06298 * 298.64932 * 12 11 10 14 14 C 1.53270 * 109.61287 * 60.57514 * 12 11 10 15 15 H 1.09003 * 109.32743 * 180.41503 * 14 12 11 16 16 C 1.52863 * 109.35764 * 61.64124 * 14 12 11 17 17 C 1.53113 * 109.34362 * 62.11415 * 16 14 12 18 18 C 1.53141 * 109.47873 * 299.34636 * 17 16 14 19 19 N 1.47019 * 109.11131 * 53.95478 * 18 17 16 20 20 C 1.34778 * 120.81404 * 125.99394 * 19 18 17 21 21 O 1.21589 * 119.99691 * 186.35343 * 20 19 18 22 22 C 1.47524 * 120.00272 * 6.35656 * 20 19 18 23 23 C 1.36774 * 126.92473 * 186.95836 * 22 20 19 24 24 C 1.41415 * 103.83418 * 179.87260 * 23 22 20 25 25 Cl 1.73602 * 126.72690 * 180.13217 * 24 23 22 26 26 N 1.30224 * 106.54988 * 0.39486 * 24 23 22 27 27 O 1.20886 * 111.96102 * 359.74355 * 26 24 23 28 28 C 1.46897 * 120.77705 * 27.63385 * 9 7 2 29 29 H 0.97005 * 119.99716 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.61236 * 354.07078 * 10 9 7 31 31 H 1.08998 * 109.61662 * 114.41711 * 10 9 7 32 32 H 1.09007 * 109.45112 * 64.68669 * 11 10 9 33 33 H 1.08997 * 109.45370 * 184.62310 * 11 10 9 34 34 H 1.09004 * 109.48856 * 182.07693 * 16 14 12 35 35 H 1.08996 * 109.49117 * 302.14852 * 16 14 12 36 36 H 1.08996 * 109.47081 * 59.35333 * 17 16 14 37 37 H 1.09002 * 109.47108 * 179.34955 * 17 16 14 38 38 H 1.09006 * 109.54017 * 173.93512 * 18 17 16 39 39 H 1.08994 * 109.54625 * 294.20630 * 18 17 16 40 40 H 1.07999 * 128.08801 * 359.97438 * 23 22 20 41 41 H 1.08997 * 109.51826 * 246.54769 * 28 9 7 42 42 H 1.09001 * 109.51689 * 6.66191 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0546 -1.2229 0.2737 9 7 1.3707 -2.3618 -0.3488 10 6 1.8185 -3.6566 0.1834 11 6 2.0820 -4.6031 -0.9907 12 6 0.8275 -4.6992 -1.8641 13 1 -0.0018 -5.1042 -1.2842 14 6 0.4761 -3.3124 -2.4143 15 1 -0.4212 -3.3849 -3.0289 16 6 1.6251 -2.8075 -3.2869 17 6 1.8104 -3.7518 -4.4778 18 6 2.1509 -5.1553 -3.9685 19 7 1.1236 -5.5807 -3.0066 20 6 0.4670 -6.7466 -3.1682 21 8 -0.4580 -7.0304 -2.4319 22 6 0.8706 -7.6784 -4.2383 23 6 0.2290 -8.8266 -4.6133 24 6 1.0228 -9.3275 -5.6710 25 17 0.7392 -10.7752 -6.5862 26 7 2.0113 -8.4930 -5.8204 27 8 1.9481 -7.5729 -5.0388 28 6 0.2212 -2.3409 -1.2632 29 1 -0.4850 0.8401 0.0004 30 1 2.7359 -3.5194 0.7557 31 1 1.0448 -4.0750 0.8272 32 1 2.9107 -4.2202 -1.5866 33 1 2.3358 -5.5922 -0.6097 34 1 1.3935 -1.8059 -3.6494 35 1 2.5427 -2.7788 -2.6992 36 1 0.8887 -3.7896 -5.0583 37 1 2.6218 -3.3872 -5.1078 38 1 2.1770 -5.8511 -4.8072 39 1 3.1232 -5.1387 -3.4763 40 1 -0.6739 -9.2508 -4.1995 41 1 -0.6777 -2.6415 -0.7251 42 1 0.0891 -1.3339 -1.6590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021718293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:46 Heat of formation + Delta-G solvation = 59.838147 kcal Electronic energy + Delta-G solvation = -28193.026359 eV Core-core repulsion = 24203.587420 eV Total energy + Delta-G solvation = -3989.438939 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -45.56126 -40.49303 -38.28754 -37.54198 -35.76029 -34.13798 -33.08958 -32.69921 -32.02132 -30.33393 -29.50626 -25.77383 -25.69642 -24.06067 -23.77136 -22.51487 -22.05229 -21.50988 -20.54795 -18.39044 -18.11636 -17.78847 -17.00313 -16.73666 -16.16713 -15.26412 -15.13315 -15.11595 -14.52233 -14.28735 -14.08809 -13.67490 -13.53830 -13.17514 -13.13047 -13.02468 -12.71994 -12.62326 -12.36454 -12.29884 -11.63754 -11.49152 -11.15681 -11.01658 -10.79594 -10.68419 -10.56606 -10.46482 -10.37076 -10.18093 -10.11413 -10.10603 -10.00617 -9.71179 -9.50843 -8.60029 -8.43967 -6.73021 -5.83492 -3.25479 0.38500 1.01313 1.40923 2.18153 2.75702 2.94442 3.34013 3.42791 3.44067 3.78875 4.23965 4.33622 4.45553 4.59761 4.94026 5.08379 5.12000 5.26924 5.31964 5.37299 5.41145 5.46270 5.65150 5.69481 5.79652 5.95523 6.02905 6.11433 6.23870 6.32784 6.36348 6.39764 6.62199 6.71138 6.75166 6.87668 6.96371 7.21387 7.26445 7.46372 7.59289 7.75878 7.85021 8.39516 9.16148 9.79244 10.36108 11.25224 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.002653 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.898464 B =10550.840065 C =10861.023238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.899 3.101 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.147 3.853 11 C -0.142 4.142 12 C 0.155 3.845 13 H 0.099 0.901 14 C -0.115 4.115 15 H 0.059 0.941 16 C -0.106 4.106 17 C -0.134 4.134 18 C 0.097 3.903 19 N -0.586 5.586 20 C 0.597 3.403 21 O -0.512 6.512 22 C -0.057 4.057 23 C -0.143 4.143 24 C 0.054 3.946 25 Cl 0.030 6.970 26 N -0.334 5.334 27 O 0.134 5.866 28 C 0.177 3.823 29 H 0.254 0.746 30 H 0.058 0.942 31 H 0.021 0.979 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.194 0.806 41 H 0.021 0.979 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -16.195 -11.941 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.195 4.195 3 Si 0.729 3.271 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.379 4.379 8 H 0.084 0.916 9 N -0.311 5.311 10 C 0.020 3.980 11 C -0.182 4.182 12 C 0.054 3.946 13 H 0.117 0.883 14 C -0.136 4.136 15 H 0.077 0.923 16 C -0.143 4.143 17 C -0.172 4.172 18 C -0.026 4.026 19 N -0.317 5.317 20 C 0.381 3.619 21 O -0.388 6.388 22 C -0.122 4.122 23 C -0.166 4.166 24 C -0.129 4.129 25 Cl 0.058 6.942 26 N -0.037 5.037 27 O 0.061 5.939 28 C 0.051 3.949 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.097 0.903 40 H 0.211 0.789 41 H 0.039 0.961 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.882 -16.282 -12.427 20.684 hybrid contribution -0.276 0.381 0.070 0.476 sum 2.606 -15.901 -12.356 20.305 Atomic orbital electron populations 1.70029 1.05237 1.25440 1.53894 1.25025 0.95240 0.98365 1.00889 0.86268 0.79390 0.84103 0.77289 1.20267 1.21586 1.21781 1.19178 0.92572 0.84627 1.41533 0.91590 1.44046 1.35346 1.01380 1.50310 1.20856 0.98059 0.86731 0.92356 1.22448 0.97189 0.99710 0.98882 1.21607 0.98941 0.89178 0.84861 0.88252 1.22071 0.97673 0.94559 0.99285 0.92277 1.21479 1.00198 0.97820 0.94834 1.21968 1.01867 0.94323 0.99019 1.22139 0.91402 0.97182 0.91874 1.48578 1.37734 1.18643 1.26778 1.16615 0.82815 0.80732 0.81739 1.90886 1.28118 1.75377 1.44433 1.24454 0.90622 0.99441 0.97716 1.22738 1.02890 0.94612 0.96359 1.24034 0.95512 0.95052 0.98312 1.98425 1.94804 1.29255 1.71735 1.73834 1.20336 0.98201 1.11348 1.85233 1.38859 1.35408 1.34406 1.20717 0.88742 0.98048 0.87421 0.93634 0.92316 0.96094 0.91328 0.92874 0.91739 0.90337 0.92018 0.90787 0.89383 0.90317 0.78898 0.96091 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.07 11.17 55.49 0.62 -24.45 16 2 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 3 Si 0.90 20.81 29.59 -169.99 -5.03 15.78 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.25 -6.39 9.60 -15.06 -0.14 -6.53 16 8 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 9 N -0.59 -13.53 2.64 -172.62 -0.46 -13.99 16 10 C 0.15 2.86 6.51 -3.73 -0.02 2.84 16 11 C -0.14 -2.28 5.02 -26.60 -0.13 -2.42 16 12 C 0.15 2.51 2.66 -67.26 -0.18 2.33 16 13 H 0.10 1.79 7.05 -51.93 -0.37 1.42 16 14 C -0.11 -2.00 2.45 -90.67 -0.22 -2.22 16 15 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 16 C -0.11 -1.66 4.86 -26.74 -0.13 -1.79 16 17 C -0.13 -1.62 6.08 -26.60 -0.16 -1.78 16 18 C 0.10 1.12 5.68 -3.69 -0.02 1.10 16 19 N -0.59 -8.12 2.66 -165.97 -0.44 -8.56 16 20 C 0.60 8.43 7.69 -12.47 -0.10 8.34 16 21 O -0.51 -8.64 16.38 5.29 0.09 -8.55 16 22 C -0.06 -0.67 6.91 -36.33 -0.25 -0.92 16 23 C -0.14 -1.48 10.97 -38.90 -0.43 -1.90 16 24 C 0.05 0.57 7.97 -17.02 -0.14 0.43 16 25 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 26 N -0.33 -3.89 12.05 32.82 0.40 -3.49 16 27 O 0.13 1.52 7.93 15.54 0.12 1.64 16 28 C 0.18 3.91 4.70 -3.95 -0.02 3.89 16 29 H 0.25 6.85 8.31 -40.82 -0.34 6.52 16 30 H 0.06 1.12 7.94 -51.93 -0.41 0.70 16 31 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 1.08 5.33 -51.92 -0.28 0.81 16 33 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.35 6.15 -51.93 -0.32 1.03 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.92 4.24 -52.64 -0.22 0.69 16 39 H 0.08 0.87 7.26 -51.93 -0.38 0.49 16 40 H 0.19 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 2.34 6.03 -51.93 -0.31 2.03 16 LS Contribution 344.36 15.07 5.19 5.19 Total: -1.00 -28.23 344.36 -8.28 -36.51 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -5.22 Total: -0.17 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -2.03 Total: 1.37 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: 0.12 Total: -50.50 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: 0.21 Total: -6.92 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.78 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.23 -8.28 -36.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.349 kcal (2) G-P(sol) polarization free energy of solvation -28.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds