Wall clock time and date at job start Tue Mar 31 2020 22:39:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00338 * 2 1 4 4 H 1.48499 * 109.47331 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46822 * 300.00252 * 3 2 1 6 6 H 1.48499 * 109.46950 * 59.99808 * 3 2 1 7 7 C 1.38820 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99702 * 197.04755 * 7 2 1 9 9 N 1.36928 * 120.00098 * 17.05116 * 7 2 1 10 10 C 1.46977 * 120.77506 * 207.61787 * 9 7 2 11 11 C 1.53091 * 108.62509 * 234.33047 * 10 9 7 12 12 C 1.53165 * 109.58035 * 304.65994 * 11 10 9 13 13 H 1.08999 * 110.06298 * 298.64932 * 12 11 10 14 14 C 1.53270 * 109.61287 * 60.57514 * 12 11 10 15 15 H 1.09003 * 109.32743 * 180.41503 * 14 12 11 16 16 C 1.52863 * 109.35764 * 61.64124 * 14 12 11 17 17 C 1.53113 * 109.34362 * 62.11415 * 16 14 12 18 18 C 1.53141 * 109.47873 * 299.34636 * 17 16 14 19 19 N 1.47019 * 109.11131 * 53.95478 * 18 17 16 20 20 C 1.34778 * 120.81404 * 125.99394 * 19 18 17 21 21 O 1.21589 * 119.99691 * 186.35343 * 20 19 18 22 22 C 1.47524 * 120.00272 * 6.35656 * 20 19 18 23 23 C 1.36774 * 126.92473 * 186.95836 * 22 20 19 24 24 C 1.41415 * 103.83418 * 179.87260 * 23 22 20 25 25 Cl 1.73602 * 126.72690 * 180.13217 * 24 23 22 26 26 N 1.30224 * 106.54988 * 0.39486 * 24 23 22 27 27 O 1.20886 * 111.96102 * 359.74355 * 26 24 23 28 28 C 1.46897 * 120.77705 * 27.63385 * 9 7 2 29 29 H 0.97005 * 119.99716 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.61236 * 354.07078 * 10 9 7 31 31 H 1.08998 * 109.61662 * 114.41711 * 10 9 7 32 32 H 1.09007 * 109.45112 * 64.68669 * 11 10 9 33 33 H 1.08997 * 109.45370 * 184.62310 * 11 10 9 34 34 H 1.09004 * 109.48856 * 182.07693 * 16 14 12 35 35 H 1.08996 * 109.49117 * 302.14852 * 16 14 12 36 36 H 1.08996 * 109.47081 * 59.35333 * 17 16 14 37 37 H 1.09002 * 109.47108 * 179.34955 * 17 16 14 38 38 H 1.09006 * 109.54017 * 173.93512 * 18 17 16 39 39 H 1.08994 * 109.54625 * 294.20630 * 18 17 16 40 40 H 1.07999 * 128.08801 * 359.97438 * 23 22 20 41 41 H 1.08997 * 109.51826 * 246.54769 * 28 9 7 42 42 H 1.09001 * 109.51689 * 6.66191 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0546 -1.2229 0.2737 9 7 1.3707 -2.3618 -0.3488 10 6 1.8185 -3.6566 0.1834 11 6 2.0820 -4.6031 -0.9907 12 6 0.8275 -4.6992 -1.8641 13 1 -0.0018 -5.1042 -1.2842 14 6 0.4761 -3.3124 -2.4143 15 1 -0.4212 -3.3849 -3.0289 16 6 1.6251 -2.8075 -3.2869 17 6 1.8104 -3.7518 -4.4778 18 6 2.1509 -5.1553 -3.9685 19 7 1.1236 -5.5807 -3.0066 20 6 0.4670 -6.7466 -3.1682 21 8 -0.4580 -7.0304 -2.4319 22 6 0.8706 -7.6784 -4.2383 23 6 0.2290 -8.8266 -4.6133 24 6 1.0228 -9.3275 -5.6710 25 17 0.7392 -10.7752 -6.5862 26 7 2.0113 -8.4930 -5.8204 27 8 1.9481 -7.5729 -5.0388 28 6 0.2212 -2.3409 -1.2632 29 1 -0.4850 0.8401 0.0004 30 1 2.7359 -3.5194 0.7557 31 1 1.0448 -4.0750 0.8272 32 1 2.9107 -4.2202 -1.5866 33 1 2.3358 -5.5922 -0.6097 34 1 1.3935 -1.8059 -3.6494 35 1 2.5427 -2.7788 -2.6992 36 1 0.8887 -3.7896 -5.0583 37 1 2.6218 -3.3872 -5.1078 38 1 2.1770 -5.8511 -4.8072 39 1 3.1232 -5.1387 -3.4763 40 1 -0.6739 -9.2508 -4.1995 41 1 -0.6777 -2.6415 -0.7251 42 1 0.0891 -1.3339 -1.6590 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021718293.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:45 Heat of formation + Delta-G solvation = 44.533603 kcal Electronic energy + Delta-G solvation = -28193.690014 eV Core-core repulsion = 24203.587420 eV Total energy + Delta-G solvation = -3990.102594 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.41857 -41.71618 -39.61314 -38.27766 -37.21428 -35.02498 -34.49524 -34.06223 -33.19516 -31.79958 -31.08391 -27.39493 -26.93671 -25.18673 -24.83053 -23.79779 -23.46364 -22.82717 -21.72966 -19.62763 -19.25255 -18.86563 -18.52283 -17.82639 -17.34217 -16.87338 -16.41135 -16.15415 -15.93812 -15.50097 -15.22649 -15.18549 -14.85362 -14.63827 -14.26879 -14.12305 -13.91902 -13.76147 -13.60745 -13.51548 -13.19884 -12.91007 -12.58850 -12.48163 -12.25546 -12.16922 -11.95324 -11.86288 -11.78396 -11.51192 -11.42048 -11.29712 -11.23852 -11.05897 -10.96777 -10.49826 -9.72227 -8.65171 -7.83391 -5.27493 -0.52770 0.24899 0.58238 1.19170 1.48857 1.52010 1.61189 1.69991 1.91617 2.54663 2.90946 3.32708 3.33659 3.47402 3.67293 3.74238 3.81981 3.94103 3.97805 4.08081 4.22348 4.40620 4.46120 4.51927 4.57312 4.67554 4.75898 4.87555 4.90908 5.00980 5.07650 5.11006 5.15329 5.22770 5.35610 5.42552 5.52273 5.64491 5.70416 5.74752 6.13389 6.42835 6.55267 6.78010 7.18630 7.89019 8.41903 9.23679 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031923 B = 0.002653 C = 0.002577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.898464 B =10550.840065 C =10861.023238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.050 4.050 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.249 4.249 8 H 0.070 0.930 9 N -0.602 5.602 10 C 0.143 3.857 11 C -0.127 4.127 12 C 0.164 3.836 13 H 0.079 0.921 14 C -0.105 4.105 15 H 0.058 0.942 16 C -0.099 4.099 17 C -0.124 4.124 18 C 0.096 3.904 19 N -0.585 5.585 20 C 0.602 3.398 21 O -0.545 6.545 22 C -0.066 4.066 23 C -0.128 4.128 24 C 0.053 3.947 25 Cl 0.047 6.953 26 N -0.342 5.342 27 O 0.139 5.861 28 C 0.187 3.813 29 H 0.248 0.752 30 H 0.064 0.936 31 H 0.011 0.989 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.211 0.789 41 H -0.012 1.012 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.278 -17.944 -13.755 23.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.245 4.245 3 Si 0.790 3.210 4 H -0.188 1.188 5 H -0.219 1.219 6 H -0.226 1.226 7 C -0.379 4.379 8 H 0.088 0.912 9 N -0.325 5.325 10 C 0.017 3.983 11 C -0.166 4.166 12 C 0.061 3.939 13 H 0.097 0.903 14 C -0.126 4.126 15 H 0.077 0.923 16 C -0.137 4.137 17 C -0.162 4.162 18 C -0.025 4.025 19 N -0.315 5.315 20 C 0.387 3.613 21 O -0.423 6.423 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.130 4.130 25 Cl 0.075 6.925 26 N -0.045 5.045 27 O 0.065 5.935 28 C 0.061 3.939 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.029 0.971 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.119 0.881 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.228 0.772 41 H 0.006 0.994 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.738 -18.066 -14.267 23.503 hybrid contribution -0.870 0.826 0.639 1.359 sum 3.868 -17.241 -13.628 22.314 Atomic orbital electron populations 1.70189 1.06686 1.25596 1.55866 1.25724 0.95869 1.01291 1.01607 0.85295 0.78860 0.80331 0.76499 1.18847 1.21879 1.22557 1.19490 0.92818 0.85587 1.40044 0.91195 1.44247 1.35224 1.02107 1.50893 1.20989 0.97725 0.85821 0.93781 1.22248 0.97206 0.99725 0.97455 1.21228 0.98413 0.88592 0.85625 0.90330 1.21836 0.98772 0.94356 0.97648 0.92312 1.21373 0.98424 0.98102 0.95785 1.21910 1.03176 0.93633 0.97507 1.22334 0.91098 0.97068 0.92013 1.48473 1.38255 1.18352 1.26465 1.16737 0.82092 0.80721 0.81737 1.90874 1.29525 1.76093 1.45834 1.23955 0.91599 0.99617 0.98002 1.22998 1.02871 0.93683 0.95517 1.24172 0.95077 0.95435 0.98364 1.98438 1.94668 1.28141 1.71270 1.73818 1.20786 0.98508 1.11435 1.85197 1.38583 1.35465 1.34287 1.20440 0.87550 0.97483 0.88450 0.94285 0.91785 0.97120 0.90290 0.90782 0.93232 0.91437 0.91730 0.88067 0.87554 0.88943 0.77214 0.99398 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.22 11.17 21.65 0.24 -53.98 16 2 C -0.05 -2.68 4.92 84.86 0.42 -2.26 16 3 Si 0.96 43.47 29.59 68.60 2.03 45.50 16 4 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 6 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 7 C -0.25 -12.91 9.60 84.04 0.81 -12.10 16 8 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 9 N -0.60 -28.30 2.64 -700.06 -1.85 -30.15 16 10 C 0.14 5.56 6.51 86.32 0.56 6.12 16 11 C -0.13 -3.89 5.02 30.68 0.15 -3.73 16 12 C 0.16 5.21 2.66 44.98 0.12 5.33 16 13 H 0.08 2.87 7.05 -2.39 -0.02 2.85 16 14 C -0.11 -3.71 2.45 -10.83 -0.03 -3.74 16 15 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 16 C -0.10 -3.03 4.86 30.59 0.15 -2.88 16 17 C -0.12 -2.67 6.08 30.68 0.19 -2.48 16 18 C 0.10 1.93 5.68 86.33 0.49 2.42 16 19 N -0.59 -15.12 2.66 -797.26 -2.12 -17.25 16 20 C 0.60 15.98 7.69 86.69 0.67 16.64 16 21 O -0.54 -17.98 16.38 -4.00 -0.07 -18.05 16 22 C -0.07 -1.40 6.91 24.38 0.17 -1.23 16 23 C -0.13 -2.31 10.97 22.71 0.25 -2.06 16 24 C 0.05 0.96 7.97 85.71 0.68 1.64 16 25 Cl 0.05 0.69 29.33 -2.72 -0.08 0.61 16 26 N -0.34 -6.98 12.05 -51.02 -0.61 -7.60 16 27 O 0.14 2.72 7.93 65.77 0.52 3.24 16 28 C 0.19 8.67 4.70 86.23 0.41 9.07 16 29 H 0.25 13.99 8.31 -92.70 -0.77 13.22 16 30 H 0.06 2.39 7.94 -2.39 -0.02 2.37 16 31 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 2.30 5.33 -2.38 -0.01 2.29 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 35 H 0.07 2.22 6.15 -2.39 -0.01 2.20 16 36 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.10 1.70 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.82 4.24 -13.70 -0.06 1.76 16 39 H 0.09 1.67 7.26 -2.39 -0.02 1.65 16 40 H 0.21 2.97 8.06 -2.91 -0.02 2.94 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.06 3.25 6.03 -2.39 -0.01 3.24 16 Total: -1.00 -62.59 344.36 4.11 -58.49 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: 1.01 Total: 8.44 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: 5.03 Total: 10.75 kcal Atomic # 7 Polarization: -104.62 SS G_CDS: -4.35 Total: -108.97 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: 0.46 Total: -14.81 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Atomic # 17 Polarization: 0.69 SS G_CDS: -0.08 Total: 0.61 kcal Total: -62.59 4.11 -58.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718293.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.020 kcal (2) G-P(sol) polarization free energy of solvation -62.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds