Wall clock time and date at job start Tue Mar 31 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00508 * 3 2 1 5 5 H 1.48498 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00135 * 3 2 1 7 7 C 1.38817 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00605 * 176.38087 * 7 2 1 9 9 N 1.36939 * 119.99353 * 356.38374 * 7 2 1 10 10 C 1.46870 * 120.46953 * 215.70021 * 9 7 2 11 11 C 1.53309 * 109.10046 * 232.63844 * 10 9 7 12 12 C 1.52896 * 108.95126 * 305.89277 * 11 10 9 13 13 H 1.09007 * 109.52838 * 301.96442 * 12 11 10 14 14 C 1.53269 * 109.34334 * 61.99953 * 12 11 10 15 15 H 1.09003 * 109.46986 * 56.57555 * 14 12 11 16 16 C 1.52821 * 109.16464 * 176.38868 * 14 12 11 17 17 C 1.53147 * 109.26155 * 298.17657 * 16 14 12 18 18 C 1.52657 * 109.69169 * 60.71588 * 17 16 14 19 19 N 1.46718 * 110.29017 * 181.35045 * 12 11 10 20 20 C 1.34775 * 120.84765 * 5.82370 * 19 12 11 21 21 O 1.21584 * 120.00034 * 5.05325 * 20 19 12 22 22 C 1.47520 * 120.00097 * 185.04708 * 20 19 12 23 23 C 1.36782 * 126.92721 * 173.24976 * 22 20 19 24 24 C 1.41412 * 103.83524 * 180.02562 * 23 22 20 25 25 Cl 1.73598 * 126.72201 * 180.02562 * 24 23 22 26 26 N 1.30229 * 106.55221 * 0.02562 * 24 23 22 27 27 O 1.20885 * 111.95711 * 359.97438 * 26 24 23 28 28 C 1.47068 * 120.47749 * 35.68256 * 9 7 2 29 29 H 0.97005 * 120.00068 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.53058 * 112.75110 * 10 9 7 31 31 H 1.09004 * 109.59244 * 352.55598 * 10 9 7 32 32 H 1.09001 * 109.55405 * 186.05516 * 11 10 9 33 33 H 1.09000 * 109.56432 * 65.73561 * 11 10 9 34 34 H 1.08994 * 109.50734 * 58.11993 * 16 14 12 35 35 H 1.09007 * 109.50163 * 178.24668 * 16 14 12 36 36 H 1.08999 * 109.44360 * 180.89233 * 17 16 14 37 37 H 1.08999 * 109.44683 * 300.80583 * 17 16 14 38 38 H 1.08996 * 109.46105 * 186.27501 * 18 17 16 39 39 H 1.08999 * 109.37724 * 66.16555 * 18 17 16 40 40 H 1.07998 * 128.08088 * 0.28510 * 23 22 20 41 41 H 1.08997 * 109.69011 * 246.41021 * 28 9 7 42 42 H 1.09005 * 109.69157 * 6.94416 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0886 -1.2032 -0.0596 9 7 1.3275 -2.3869 0.0737 10 6 1.8859 -3.5228 0.8187 11 6 1.9016 -4.7586 -0.0884 12 6 0.4944 -4.9870 -0.6409 13 1 -0.2058 -5.1111 0.1853 14 6 0.0792 -3.7787 -1.4876 15 1 0.8131 -3.6192 -2.2776 16 6 -1.2896 -4.0495 -2.1109 17 6 -1.1929 -5.2693 -3.0320 18 6 -0.7678 -6.4922 -2.2231 19 7 0.4689 -6.1838 -1.4893 20 6 1.5530 -6.9772 -1.5978 21 8 2.5374 -6.7577 -0.9188 22 6 1.5451 -8.1120 -2.5403 23 6 2.5993 -8.9237 -2.8580 24 6 2.0556 -9.8329 -3.7947 25 17 2.8925 -11.1308 -4.5877 26 7 0.8041 -9.5059 -3.9459 27 8 0.4991 -8.5570 -3.2619 28 6 0.0245 -2.5399 -0.5910 29 1 -0.4850 0.8401 0.0004 30 1 1.2695 -3.7220 1.6954 31 1 2.9029 -3.2890 1.1336 32 1 2.2133 -5.6300 0.4875 33 1 2.5957 -4.5972 -0.9132 34 1 -2.0163 -4.2454 -1.3225 35 1 -1.6044 -3.1808 -2.6893 36 1 -2.1640 -5.4556 -3.4905 37 1 -0.4548 -5.0782 -3.8109 38 1 -0.5921 -7.3304 -2.8973 39 1 -1.5563 -6.7502 -1.5163 40 1 3.6096 -8.8826 -2.4785 41 1 -0.7571 -2.6669 0.1580 42 1 -0.1856 -1.6571 -1.1950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021718294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:49 Heat of formation + Delta-G solvation = 73.679841 kcal Electronic energy + Delta-G solvation = -28196.156457 eV Core-core repulsion = 24207.317740 eV Total energy + Delta-G solvation = -3988.838718 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.52192 -40.59264 -37.91951 -37.50967 -35.98711 -34.14821 -33.17037 -32.92115 -31.97868 -30.25430 -29.21583 -25.78362 -25.61721 -24.04802 -23.56682 -22.58897 -22.35974 -20.94618 -19.84857 -19.40549 -18.29654 -17.72439 -16.82814 -16.74240 -16.09304 -15.31664 -15.20443 -14.81215 -14.55382 -14.26072 -14.00714 -13.89012 -13.46971 -13.23245 -13.12341 -12.87898 -12.74338 -12.51292 -12.26110 -12.13233 -11.63554 -11.43776 -11.01249 -10.93272 -10.90805 -10.80236 -10.72531 -10.44666 -10.30989 -10.16111 -10.11329 -9.99740 -9.84927 -9.52467 -9.16974 -8.50475 -8.41329 -6.53187 -5.79518 -3.31938 0.43100 1.04258 1.44996 2.21478 2.79399 2.98327 3.38098 3.42958 3.44559 3.82211 4.22308 4.37053 4.47778 4.63783 4.92011 5.00618 5.11781 5.30736 5.32865 5.39552 5.44960 5.51300 5.69944 5.71311 5.84675 5.94401 6.06088 6.20887 6.23231 6.33834 6.41428 6.53727 6.63068 6.76156 6.89416 6.93868 7.09957 7.23785 7.41354 7.51075 7.75909 7.79166 7.95257 8.52919 9.24497 9.83272 10.42538 11.26738 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.002816 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.570241 B = 9940.873224 C =10532.584600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.253 4.253 8 H 0.063 0.937 9 N -0.595 5.595 10 C 0.141 3.859 11 C -0.127 4.127 12 C 0.157 3.843 13 H 0.073 0.927 14 C -0.122 4.122 15 H 0.066 0.934 16 C -0.112 4.112 17 C -0.132 4.132 18 C 0.094 3.906 19 N -0.587 5.587 20 C 0.597 3.403 21 O -0.496 6.496 22 C -0.059 4.059 23 C -0.143 4.143 24 C 0.055 3.945 25 Cl 0.029 6.971 26 N -0.336 5.336 27 O 0.130 5.870 28 C 0.179 3.821 29 H 0.255 0.745 30 H 0.016 0.984 31 H 0.056 0.944 32 H 0.083 0.917 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.194 0.806 41 H 0.017 0.983 42 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 -18.804 -7.232 20.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.189 4.189 3 Si 0.733 3.267 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.383 4.383 8 H 0.080 0.920 9 N -0.318 5.318 10 C 0.014 3.986 11 C -0.166 4.166 12 C 0.056 3.944 13 H 0.091 0.909 14 C -0.143 4.143 15 H 0.085 0.915 16 C -0.151 4.151 17 C -0.171 4.171 18 C -0.028 4.028 19 N -0.319 5.319 20 C 0.380 3.620 21 O -0.372 6.372 22 C -0.124 4.124 23 C -0.167 4.167 24 C -0.128 4.128 25 Cl 0.057 6.943 26 N -0.041 5.041 27 O 0.058 5.942 28 C 0.053 3.947 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.211 0.789 41 H 0.035 0.965 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.538 -19.116 -7.646 20.646 hybrid contribution 1.115 0.724 0.042 1.330 sum -0.423 -18.392 -7.604 19.907 Atomic orbital electron populations 1.69863 1.05314 1.25557 1.54291 1.25311 0.95555 0.98253 0.99809 0.86365 0.78941 0.83249 0.78161 1.20955 1.21599 1.20843 1.19125 0.90674 0.83179 1.45299 0.91966 1.44054 1.20631 1.09859 1.57211 1.21108 0.97615 0.87361 0.92496 1.22594 0.93681 0.99394 1.00924 1.21523 0.99687 0.81733 0.91465 0.90878 1.22347 0.95819 0.96980 0.99203 0.91519 1.21500 0.97958 0.97032 0.98569 1.21836 1.01659 0.95064 0.98512 1.22141 0.86247 0.98655 0.95802 1.48340 1.11867 1.25785 1.45875 1.16762 0.84080 0.79957 0.81167 1.90944 1.33888 1.69601 1.42773 1.24753 0.87730 1.00544 0.99423 1.22736 1.02182 0.93666 0.98079 1.24029 0.91149 0.97245 1.00395 1.98423 1.73906 1.43886 1.78111 1.73818 1.15063 1.02272 1.12930 1.85199 1.34075 1.33376 1.41505 1.20944 0.86709 0.93816 0.93252 0.93473 0.96609 0.92499 0.89850 0.91766 0.91917 0.91240 0.90684 0.91680 0.88831 0.90465 0.78919 0.96493 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.38 10.66 55.49 0.59 -24.79 16 2 C 0.01 0.25 5.31 -17.43 -0.09 0.16 16 3 Si 0.90 21.40 29.56 -169.99 -5.02 16.38 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.86 9.53 -15.06 -0.14 -7.00 16 8 H 0.06 1.68 7.83 -52.49 -0.41 1.27 16 9 N -0.60 -14.65 3.01 -172.28 -0.52 -15.16 16 10 C 0.14 2.99 6.50 -3.68 -0.02 2.96 16 11 C -0.13 -2.34 3.82 -26.62 -0.10 -2.44 16 12 C 0.16 2.59 2.63 -67.73 -0.18 2.41 16 13 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 14 C -0.12 -2.18 2.21 -90.56 -0.20 -2.38 16 15 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 16 C -0.11 -1.59 5.25 -26.75 -0.14 -1.73 16 17 C -0.13 -1.49 6.05 -26.83 -0.16 -1.66 16 18 C 0.09 1.04 6.30 -3.91 -0.02 1.01 16 19 N -0.59 -8.16 2.98 -166.82 -0.50 -8.66 16 20 C 0.60 8.48 7.59 -12.48 -0.09 8.38 16 21 O -0.50 -8.24 12.58 5.29 0.07 -8.17 16 22 C -0.06 -0.70 6.99 -36.33 -0.25 -0.96 16 23 C -0.14 -1.52 10.97 -38.90 -0.43 -1.95 16 24 C 0.06 0.59 7.97 -17.02 -0.14 0.46 16 25 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 26 N -0.34 -3.95 12.05 32.82 0.40 -3.55 16 27 O 0.13 1.47 7.76 15.54 0.12 1.59 16 28 C 0.18 4.05 4.58 -3.72 -0.02 4.03 16 29 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 32 H 0.08 1.50 6.13 -51.93 -0.32 1.18 16 33 H 0.06 1.30 7.44 -51.93 -0.39 0.91 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.09 0.94 3.86 -54.52 -0.21 0.73 16 39 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.19 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.10 2.63 5.98 -51.93 -0.31 2.32 16 LS Contribution 343.75 15.07 5.18 5.18 Total: -1.00 -28.93 343.75 -8.61 -37.54 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.41 Total: -0.40 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: -1.99 Total: 1.30 kcal Atomic # 7 Polarization: -52.13 SS G_CDS: -0.03 Total: -52.16 kcal Atomic # 8 Polarization: -6.77 SS G_CDS: 0.19 Total: -6.58 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.93 -8.61 -37.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.224 kcal (2) G-P(sol) polarization free energy of solvation -28.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds