Wall clock time and date at job start Tue Mar 31 2020 22:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86802 * 120.00343 * 2 1 4 4 H 1.48496 * 109.47164 * 240.00508 * 3 2 1 5 5 H 1.48498 * 109.46946 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46983 * 120.00135 * 3 2 1 7 7 C 1.38817 * 120.00147 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00605 * 176.38087 * 7 2 1 9 9 N 1.36939 * 119.99353 * 356.38374 * 7 2 1 10 10 C 1.46870 * 120.46953 * 215.70021 * 9 7 2 11 11 C 1.53309 * 109.10046 * 232.63844 * 10 9 7 12 12 C 1.52896 * 108.95126 * 305.89277 * 11 10 9 13 13 H 1.09007 * 109.52838 * 301.96442 * 12 11 10 14 14 C 1.53269 * 109.34334 * 61.99953 * 12 11 10 15 15 H 1.09003 * 109.46986 * 56.57555 * 14 12 11 16 16 C 1.52821 * 109.16464 * 176.38868 * 14 12 11 17 17 C 1.53147 * 109.26155 * 298.17657 * 16 14 12 18 18 C 1.52657 * 109.69169 * 60.71588 * 17 16 14 19 19 N 1.46718 * 110.29017 * 181.35045 * 12 11 10 20 20 C 1.34775 * 120.84765 * 5.82370 * 19 12 11 21 21 O 1.21584 * 120.00034 * 5.05325 * 20 19 12 22 22 C 1.47520 * 120.00097 * 185.04708 * 20 19 12 23 23 C 1.36782 * 126.92721 * 173.24976 * 22 20 19 24 24 C 1.41412 * 103.83524 * 180.02562 * 23 22 20 25 25 Cl 1.73598 * 126.72201 * 180.02562 * 24 23 22 26 26 N 1.30229 * 106.55221 * 0.02562 * 24 23 22 27 27 O 1.20885 * 111.95711 * 359.97438 * 26 24 23 28 28 C 1.47068 * 120.47749 * 35.68256 * 9 7 2 29 29 H 0.97005 * 120.00068 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.53058 * 112.75110 * 10 9 7 31 31 H 1.09004 * 109.59244 * 352.55598 * 10 9 7 32 32 H 1.09001 * 109.55405 * 186.05516 * 11 10 9 33 33 H 1.09000 * 109.56432 * 65.73561 * 11 10 9 34 34 H 1.08994 * 109.50734 * 58.11993 * 16 14 12 35 35 H 1.09007 * 109.50163 * 178.24668 * 16 14 12 36 36 H 1.08999 * 109.44360 * 180.89233 * 17 16 14 37 37 H 1.08999 * 109.44683 * 300.80583 * 17 16 14 38 38 H 1.08996 * 109.46105 * 186.27501 * 18 17 16 39 39 H 1.08999 * 109.37724 * 66.16555 * 18 17 16 40 40 H 1.07998 * 128.08088 * 0.28510 * 23 22 20 41 41 H 1.08997 * 109.69011 * 246.41021 * 28 9 7 42 42 H 1.09005 * 109.69157 * 6.94416 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0886 -1.2032 -0.0596 9 7 1.3275 -2.3869 0.0737 10 6 1.8859 -3.5228 0.8187 11 6 1.9016 -4.7586 -0.0884 12 6 0.4944 -4.9870 -0.6409 13 1 -0.2058 -5.1111 0.1853 14 6 0.0792 -3.7787 -1.4876 15 1 0.8131 -3.6192 -2.2776 16 6 -1.2896 -4.0495 -2.1109 17 6 -1.1929 -5.2693 -3.0320 18 6 -0.7678 -6.4922 -2.2231 19 7 0.4689 -6.1838 -1.4893 20 6 1.5530 -6.9772 -1.5978 21 8 2.5374 -6.7577 -0.9188 22 6 1.5451 -8.1120 -2.5403 23 6 2.5993 -8.9237 -2.8580 24 6 2.0556 -9.8329 -3.7947 25 17 2.8925 -11.1308 -4.5877 26 7 0.8041 -9.5059 -3.9459 27 8 0.4991 -8.5570 -3.2619 28 6 0.0245 -2.5399 -0.5910 29 1 -0.4850 0.8401 0.0004 30 1 1.2695 -3.7220 1.6954 31 1 2.9029 -3.2890 1.1336 32 1 2.2133 -5.6300 0.4875 33 1 2.5957 -4.5972 -0.9132 34 1 -2.0163 -4.2454 -1.3225 35 1 -1.6044 -3.1808 -2.6893 36 1 -2.1640 -5.4556 -3.4905 37 1 -0.4548 -5.0782 -3.8109 38 1 -0.5921 -7.3304 -2.8973 39 1 -1.5563 -6.7502 -1.5163 40 1 3.6096 -8.8826 -2.4785 41 1 -0.7571 -2.6669 0.1580 42 1 -0.1856 -1.6571 -1.1950 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021718294.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:49 Heat of formation + Delta-G solvation = 57.391776 kcal Electronic energy + Delta-G solvation = -28196.862761 eV Core-core repulsion = 24207.317740 eV Total energy + Delta-G solvation = -3989.545021 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.39941 -41.81328 -39.25932 -38.27428 -37.45984 -35.04892 -34.68209 -34.22242 -33.21466 -31.80218 -30.79306 -27.37457 -26.92284 -25.09421 -24.71973 -23.94364 -23.80034 -22.04835 -21.22321 -20.90547 -19.19079 -18.75759 -18.69909 -17.72868 -17.35535 -16.79139 -16.41746 -16.23017 -15.62540 -15.51679 -15.37914 -15.18407 -14.95717 -14.71789 -14.17555 -13.97425 -13.88621 -13.76682 -13.57704 -13.47414 -13.14790 -12.79427 -12.73818 -12.54654 -12.24065 -12.15035 -12.04469 -12.03409 -11.71719 -11.65766 -11.45398 -11.24071 -11.06135 -11.01074 -10.58587 -10.47033 -9.67933 -8.51029 -7.85116 -5.41298 -0.49930 0.25369 0.59859 1.21312 1.47202 1.49069 1.55500 1.73158 1.95174 2.50437 2.92738 3.27248 3.32072 3.49077 3.66892 3.75972 3.88950 3.92925 3.99573 4.09591 4.30219 4.38026 4.46792 4.53670 4.64301 4.74015 4.82667 4.86143 4.88918 4.96613 5.06781 5.11752 5.21602 5.30835 5.41905 5.45557 5.56230 5.60921 5.67411 5.86974 6.15863 6.47980 6.59680 6.85278 7.20114 7.87164 8.40281 9.17661 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022278 B = 0.002816 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.570241 B = 9940.873224 C =10532.584600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.039 4.039 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.270 4.270 8 H 0.057 0.943 9 N -0.615 5.615 10 C 0.139 3.861 11 C -0.108 4.108 12 C 0.165 3.835 13 H 0.080 0.920 14 C -0.109 4.109 15 H 0.044 0.956 16 C -0.109 4.109 17 C -0.124 4.124 18 C 0.092 3.908 19 N -0.588 5.588 20 C 0.598 3.402 21 O -0.526 6.526 22 C -0.068 4.068 23 C -0.131 4.131 24 C 0.053 3.947 25 Cl 0.046 6.954 26 N -0.344 5.344 27 O 0.136 5.864 28 C 0.188 3.812 29 H 0.252 0.748 30 H 0.019 0.981 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.043 0.957 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.109 0.891 37 H 0.057 0.943 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.210 0.790 41 H 0.002 0.998 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.450 -20.751 -8.188 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.235 4.235 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.400 4.400 8 H 0.075 0.925 9 N -0.339 5.339 10 C 0.013 3.987 11 C -0.147 4.147 12 C 0.063 3.937 13 H 0.098 0.902 14 C -0.130 4.130 15 H 0.062 0.938 16 C -0.147 4.147 17 C -0.162 4.162 18 C -0.029 4.029 19 N -0.318 5.318 20 C 0.383 3.617 21 O -0.404 6.404 22 C -0.133 4.133 23 C -0.153 4.153 24 C -0.130 4.130 25 Cl 0.074 6.926 26 N -0.048 5.048 27 O 0.064 5.936 28 C 0.062 3.938 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.068 0.932 32 H 0.111 0.889 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.127 0.873 37 H 0.076 0.924 38 H 0.126 0.874 39 H 0.118 0.882 40 H 0.227 0.773 41 H 0.020 0.980 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.943 -21.105 -8.624 22.882 hybrid contribution 1.271 1.256 0.312 1.814 sum -0.672 -19.849 -8.312 21.530 Atomic orbital electron populations 1.70042 1.06383 1.25866 1.55086 1.25990 0.96394 1.01164 0.99971 0.85386 0.77700 0.79372 0.78203 1.20430 1.21571 1.20434 1.19375 0.90795 0.84581 1.45252 0.92531 1.44322 1.21058 1.10150 1.58341 1.21205 0.96984 0.87548 0.92993 1.22353 0.94663 0.98022 0.99697 1.21188 0.98304 0.82459 0.91721 0.90220 1.22053 0.97766 0.95465 0.97737 0.93792 1.21466 0.95480 0.98468 0.99255 1.21800 1.03350 0.93479 0.97598 1.22392 0.85374 0.98837 0.96287 1.48278 1.13059 1.24731 1.45760 1.16884 0.83489 0.80243 0.81069 1.90915 1.34779 1.70637 1.44073 1.24231 0.88542 1.00515 1.00018 1.22984 1.02557 0.92677 0.97129 1.24163 0.90923 0.97611 1.00329 1.98435 1.73468 1.43006 1.77734 1.73800 1.15629 1.02365 1.13047 1.85166 1.33743 1.33336 1.41382 1.20695 0.85520 0.94733 0.92857 0.93870 0.96331 0.93219 0.88948 0.93827 0.90856 0.91903 0.87317 0.92433 0.87414 0.88242 0.77347 0.98039 0.91390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.54 10.66 21.65 0.23 -53.31 16 2 C -0.04 -2.18 5.31 84.86 0.45 -1.73 16 3 Si 0.97 44.80 29.56 68.60 2.03 46.83 16 4 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 6 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 7 C -0.27 -15.08 9.53 84.03 0.80 -14.28 16 8 H 0.06 3.15 7.83 -2.91 -0.02 3.13 16 9 N -0.62 -31.34 3.01 -698.96 -2.10 -33.44 16 10 C 0.14 6.02 6.50 86.41 0.56 6.59 16 11 C -0.11 -4.03 3.82 30.66 0.12 -3.91 16 12 C 0.17 5.36 2.63 45.01 0.12 5.48 16 13 H 0.08 2.53 8.14 -2.38 -0.02 2.51 16 14 C -0.11 -3.92 2.21 -10.75 -0.02 -3.94 16 15 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 16 C -0.11 -2.94 5.25 30.58 0.16 -2.78 16 17 C -0.12 -2.46 6.05 30.53 0.18 -2.28 16 18 C 0.09 1.75 6.30 86.16 0.54 2.29 16 19 N -0.59 -15.35 2.98 -799.97 -2.38 -17.73 16 20 C 0.60 16.13 7.59 86.69 0.66 16.79 16 21 O -0.53 -17.06 12.58 -3.98 -0.05 -17.11 16 22 C -0.07 -1.47 6.99 24.38 0.17 -1.30 16 23 C -0.13 -2.48 10.97 22.71 0.25 -2.23 16 24 C 0.05 1.00 7.97 85.71 0.68 1.69 16 25 Cl 0.05 0.71 29.33 -2.72 -0.08 0.63 16 26 N -0.34 -7.20 12.05 -51.02 -0.61 -7.81 16 27 O 0.14 2.72 7.76 65.78 0.51 3.23 16 28 C 0.19 8.80 4.58 86.28 0.40 9.20 16 29 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 30 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.05 2.17 7.93 -2.39 -0.02 2.15 16 32 H 0.09 3.30 6.13 -2.39 -0.01 3.29 16 33 H 0.04 1.80 7.44 -2.39 -0.02 1.78 16 34 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 36 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.11 1.81 3.86 -43.36 -0.17 1.64 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.21 3.19 8.06 -2.91 -0.02 3.17 16 41 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.07 3.66 5.98 -2.38 -0.01 3.64 16 Total: -1.00 -64.08 343.75 3.51 -60.58 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: 0.90 Total: 8.57 kcal Atomic # 6 Polarization: 4.50 SS G_CDS: 5.07 Total: 9.57 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -4.87 Total: -112.29 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.46 Total: -13.88 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: 0.71 SS G_CDS: -0.08 Total: 0.63 kcal Total: -64.08 3.51 -60.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718294.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.968 kcal (2) G-P(sol) polarization free energy of solvation -64.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds