Wall clock time and date at job start Tue Mar 31 2020 22:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86806 * 120.00044 * 2 1 4 4 H 1.48501 * 109.46887 * 89.99848 * 3 2 1 5 5 H 1.48504 * 109.46958 * 209.99887 * 3 2 1 6 6 H 1.48495 * 109.47211 * 330.00168 * 3 2 1 7 7 C 1.38813 * 120.00280 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00533 * 170.31638 * 7 2 1 9 9 N 1.36936 * 119.99648 * 350.31852 * 7 2 1 10 10 C 1.46977 * 120.77548 * 148.87037 * 9 7 2 11 11 C 1.52015 * 108.54927 * 126.04517 * 10 9 7 12 12 C 1.53159 * 110.31733 * 54.96028 * 11 10 9 13 13 H 1.08998 * 110.06032 * 61.20487 * 12 11 10 14 14 C 1.53144 * 109.59133 * 300.03505 * 12 11 10 15 15 H 1.09000 * 109.25010 * 178.84831 * 14 12 11 16 16 C 1.52856 * 108.71709 * 297.99796 * 14 12 11 17 17 C 1.53240 * 109.28175 * 296.77583 * 16 14 12 18 18 C 1.53147 * 108.81776 * 61.85392 * 17 16 14 19 19 N 1.46952 * 109.02228 * 305.52048 * 18 17 16 20 20 C 1.34773 * 120.84217 * 234.04514 * 19 18 17 21 21 O 1.21584 * 119.99811 * 184.55430 * 20 19 18 22 22 C 1.47523 * 120.00119 * 4.55057 * 20 19 18 23 23 C 1.36782 * 126.92556 * 173.68077 * 22 20 19 24 24 C 1.41416 * 103.83777 * 180.02562 * 23 22 20 25 25 Cl 1.73594 * 126.72434 * 180.02562 * 24 23 22 26 26 N 1.30223 * 106.54427 * 359.97438 * 24 23 22 27 27 O 1.20882 * 111.96681 * 359.70271 * 26 24 23 28 28 C 1.46896 * 120.77381 * 329.14823 * 9 7 2 29 29 H 0.97001 * 120.00061 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.61359 * 245.44299 * 10 9 7 31 31 H 1.09005 * 109.61208 * 5.96241 * 10 9 7 32 32 H 1.09000 * 108.57878 * 295.01599 * 11 10 9 33 33 H 1.09001 * 109.56574 * 175.52097 * 11 10 9 34 34 H 1.08995 * 109.49393 * 57.53026 * 16 14 12 35 35 H 1.09001 * 109.49219 * 177.60663 * 16 14 12 36 36 H 1.08997 * 110.13013 * 301.85970 * 17 16 14 37 37 H 1.08993 * 109.46701 * 181.45223 * 17 16 14 38 38 H 1.08997 * 109.54563 * 185.65549 * 18 17 16 39 39 H 1.09006 * 109.62320 * 65.42675 * 18 17 16 40 40 H 1.08003 * 128.08619 * 359.97090 * 23 22 20 41 41 H 1.08997 * 109.51612 * 353.23666 * 28 9 7 42 42 H 1.09000 * 109.51492 * 113.39961 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4476 2.6527 -0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 3.0786 -1.2088 -0.1579 9 7 1.3402 -2.3797 0.1984 10 6 1.8066 -3.6253 -0.4271 11 6 1.9800 -4.6757 0.6580 12 6 0.6812 -4.8384 1.4531 13 1 -0.1214 -5.1700 0.7944 14 6 0.3080 -3.5042 2.1056 15 1 -0.6274 -3.6210 2.6529 16 6 1.4164 -3.1080 3.0807 17 6 1.5039 -4.1522 4.1988 18 6 1.8652 -5.5068 3.5824 19 7 0.8958 -5.8257 2.5250 20 6 0.2200 -6.9917 2.5360 21 8 -0.5162 -7.2764 1.6112 22 6 0.3736 -7.9227 3.6700 23 6 -0.3271 -9.0774 3.8860 24 6 0.2067 -9.5754 5.0971 25 17 -0.2646 -11.0303 5.9186 26 7 1.1217 -8.7293 5.4747 27 8 1.2360 -7.8103 4.6979 28 6 0.1350 -2.4262 1.0369 29 1 -0.4850 0.8400 -0.0004 30 1 1.0674 -3.9708 -1.1499 31 1 2.7580 -3.4488 -0.9289 32 1 2.7780 -4.3548 1.3276 33 1 2.2491 -5.6291 0.2033 34 1 2.3653 -3.0476 2.5478 35 1 1.1839 -2.1384 3.5212 36 1 0.5466 -4.2313 4.7140 37 1 2.2761 -3.8592 4.9100 38 1 1.8323 -6.2780 4.3520 39 1 2.8673 -5.4595 3.1562 40 1 -1.1067 -9.5078 3.2749 41 1 -0.0127 -1.4585 1.5163 42 1 -0.7304 -2.6627 0.4179 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021718295.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:52 Heat of formation + Delta-G solvation = 62.330550 kcal Electronic energy + Delta-G solvation = -28202.896368 eV Core-core repulsion = 24213.565508 eV Total energy + Delta-G solvation = -3989.330860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.55302 -40.50090 -38.30004 -37.53447 -35.78432 -34.13914 -33.08226 -32.68955 -32.02285 -30.33757 -29.50808 -25.76861 -25.69688 -24.06168 -23.73893 -22.51999 -22.02278 -21.53054 -20.57276 -18.33988 -18.09417 -17.79675 -17.04867 -16.76015 -16.13506 -15.26200 -15.13316 -15.09966 -14.53965 -14.30725 -14.13728 -13.62314 -13.50198 -13.16986 -13.13640 -13.00755 -12.69788 -12.59474 -12.33258 -12.27830 -11.65302 -11.48387 -11.07651 -10.97120 -10.81521 -10.69979 -10.55567 -10.46795 -10.37089 -10.16901 -10.09647 -10.09114 -10.00021 -9.70781 -9.51531 -8.59595 -8.44326 -6.67251 -5.82248 -3.30423 0.39440 1.01923 1.42194 2.17701 2.77224 2.94139 3.34329 3.41624 3.42476 3.79835 4.20719 4.34468 4.44767 4.60148 4.96658 5.09717 5.13858 5.28043 5.33977 5.39496 5.41885 5.47530 5.67494 5.72488 5.81795 5.97250 6.03361 6.12677 6.27943 6.34047 6.38897 6.41473 6.64009 6.73199 6.76916 6.89295 6.98337 7.22372 7.29055 7.48774 7.64522 7.75071 7.85954 8.43189 9.17998 9.78826 10.37154 11.25702 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031992 B = 0.002647 C = 0.002569 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.999533 B =10576.193561 C =10895.642404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.903 3.097 4 H -0.287 1.287 5 H -0.279 1.279 6 H -0.291 1.291 7 C -0.250 4.250 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.147 3.853 11 C -0.141 4.141 12 C 0.154 3.846 13 H 0.098 0.902 14 C -0.117 4.117 15 H 0.059 0.941 16 C -0.105 4.105 17 C -0.134 4.134 18 C 0.093 3.907 19 N -0.585 5.585 20 C 0.597 3.403 21 O -0.512 6.512 22 C -0.057 4.057 23 C -0.143 4.143 24 C 0.055 3.945 25 Cl 0.030 6.970 26 N -0.335 5.335 27 O 0.133 5.867 28 C 0.178 3.822 29 H 0.254 0.746 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.194 0.806 41 H 0.097 0.903 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.178 -16.846 10.685 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.217 1.217 7 C -0.380 4.380 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.020 3.980 11 C -0.181 4.181 12 C 0.054 3.946 13 H 0.116 0.884 14 C -0.138 4.138 15 H 0.077 0.923 16 C -0.143 4.143 17 C -0.172 4.172 18 C -0.029 4.029 19 N -0.316 5.316 20 C 0.381 3.619 21 O -0.389 6.389 22 C -0.122 4.122 23 C -0.166 4.166 24 C -0.128 4.128 25 Cl 0.057 6.943 26 N -0.039 5.039 27 O 0.061 5.939 28 C 0.051 3.949 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.211 0.789 41 H 0.115 0.885 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 1.454 -16.913 11.279 20.381 hybrid contribution -0.212 0.370 -0.225 0.483 sum 1.242 -16.543 11.054 19.935 Atomic orbital electron populations 1.69941 1.05231 1.25517 1.54253 1.25154 0.95397 0.98341 1.00461 0.86277 0.79044 0.83664 0.77660 1.21444 1.20455 1.21728 1.19143 0.90653 0.83648 1.44507 0.91741 1.44024 1.30196 1.03688 1.53243 1.20682 0.98186 0.86816 0.92349 1.22218 0.96781 0.99598 0.99484 1.21530 0.99094 0.86888 0.87124 0.88415 1.22113 0.97617 0.95359 0.98665 0.92293 1.21508 1.00583 0.97307 0.94898 1.22005 1.01885 0.94565 0.98717 1.22240 0.92598 0.98466 0.89637 1.48533 1.39746 1.16589 1.26691 1.16624 0.81434 0.80602 0.83272 1.90884 1.39039 1.74703 1.34227 1.24465 0.95320 0.99317 0.93114 1.22736 1.03096 0.94454 0.96293 1.24023 0.98639 0.94772 0.95408 1.98424 1.89766 1.28550 1.77516 1.73825 1.17664 0.98094 1.14304 1.85223 1.47284 1.35548 1.25855 1.20755 0.88083 0.96605 0.89430 0.93536 0.96251 0.92234 0.91469 0.92839 0.90215 0.91889 0.91908 0.90833 0.89064 0.90262 0.78908 0.88483 0.96174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.10 10.96 55.49 0.61 -24.49 16 2 C 0.01 0.13 5.08 -17.43 -0.09 0.05 16 3 Si 0.90 20.85 29.56 -169.99 -5.03 15.83 16 4 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.25 -6.39 9.61 -15.06 -0.14 -6.54 16 8 H 0.06 1.63 7.85 -52.49 -0.41 1.22 16 9 N -0.59 -13.58 2.60 -173.27 -0.45 -14.03 16 10 C 0.15 2.87 6.50 -4.28 -0.03 2.84 16 11 C -0.14 -2.29 4.96 -27.15 -0.13 -2.42 16 12 C 0.15 2.52 2.62 -67.34 -0.18 2.34 16 13 H 0.10 1.77 7.08 -51.93 -0.37 1.40 16 14 C -0.12 -2.04 2.49 -90.74 -0.23 -2.26 16 15 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 16 C -0.11 -1.66 4.82 -26.68 -0.13 -1.79 16 17 C -0.13 -1.63 6.12 -26.53 -0.16 -1.79 16 18 C 0.09 1.09 5.85 -3.72 -0.02 1.07 16 19 N -0.58 -8.15 2.67 -166.11 -0.44 -8.60 16 20 C 0.60 8.47 7.70 -12.48 -0.10 8.38 16 21 O -0.51 -8.67 16.39 5.29 0.09 -8.58 16 22 C -0.06 -0.67 6.99 -36.33 -0.25 -0.93 16 23 C -0.14 -1.48 10.96 -38.90 -0.43 -1.91 16 24 C 0.05 0.58 7.97 -17.03 -0.14 0.44 16 25 Cl 0.03 0.26 29.33 -51.86 -1.52 -1.26 16 26 N -0.33 -3.91 12.05 32.82 0.40 -3.52 16 27 O 0.13 1.51 7.76 15.54 0.12 1.63 16 28 C 0.18 3.93 4.65 -3.94 -0.02 3.92 16 29 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 32 H 0.07 1.07 5.36 -51.93 -0.28 0.79 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 1.37 6.05 -51.93 -0.31 1.06 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.96 3.84 -54.56 -0.21 0.75 16 39 H 0.08 0.88 7.32 -51.93 -0.38 0.50 16 40 H 0.19 1.64 8.06 -52.48 -0.42 1.22 16 41 H 0.10 2.43 6.04 -51.93 -0.31 2.11 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 343.83 15.07 5.18 5.18 Total: -1.00 -28.11 343.83 -8.30 -36.40 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -5.21 Total: 0.05 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -2.04 Total: 1.40 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.11 Total: -50.64 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: 0.21 Total: -6.95 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.83 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.52 Total: -1.26 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -28.11 -8.30 -36.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021718295.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.734 kcal (2) G-P(sol) polarization free energy of solvation -28.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.403 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds