Wall clock time and date at job start Tue Mar 31 2020 22:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30215 * 126.78998 * 2 1 4 4 O 1.20913 * 111.65001 * 180.02562 * 3 2 1 5 5 C 1.34071 * 111.55209 * 359.75893 * 4 3 2 6 6 Cl 1.73601 * 126.80016 * 180.25388 * 5 4 3 7 7 C 1.35678 * 106.40492 * 0.38270 * 5 4 3 8 8 C 1.50696 * 128.01445 * 179.91180 * 7 5 4 9 9 C 1.50696 * 109.47001 * 269.67317 * 8 7 5 10 10 O 1.21280 * 120.00203 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99912 * 180.02562 * 9 8 7 12 12 C 1.47165 * 120.71259 * 180.02562 * 11 9 8 13 13 C 1.53888 * 108.03358 * 132.73688 * 12 11 9 14 14 H 1.09006 * 112.09741 * 181.91309 * 13 12 11 15 15 C 1.54551 * 108.36533 * 306.25094 * 13 12 11 16 16 C 1.54822 * 104.74198 * 89.17721 * 15 13 12 17 17 C 1.54547 * 104.74727 * 359.97438 * 16 15 13 18 18 H 1.09002 * 112.68318 * 146.81265 * 17 16 15 19 19 C 1.47163 * 120.71115 * 359.97438 * 11 9 8 20 20 N 1.48310 * 107.20892 * 58.36028 * 13 12 11 21 21 C 1.36931 * 128.07510 * 106.09930 * 20 13 12 22 22 H 1.07999 * 119.99336 * 206.48646 * 21 20 13 23 23 C 1.38810 * 120.00451 * 26.48965 * 21 20 13 24 24 N 1.31620 * 120.00074 * 195.95308 * 23 21 20 25 25 Si 1.86800 * 119.99846 * 15.94627 * 23 21 20 26 26 H 1.48495 * 109.47649 * 268.92191 * 25 23 21 27 27 H 1.48500 * 109.46922 * 28.92678 * 25 23 21 28 28 H 1.48497 * 109.46718 * 148.92005 * 25 23 21 29 29 H 1.09004 * 109.47042 * 269.97958 * 1 2 3 30 30 H 1.09001 * 109.46693 * 29.98147 * 1 2 3 31 31 H 1.08994 * 109.46671 * 149.97667 * 1 2 3 32 32 H 1.09004 * 109.46598 * 149.67662 * 8 7 5 33 33 H 1.08995 * 109.47274 * 29.67795 * 8 7 5 34 34 H 1.09000 * 109.74788 * 13.10365 * 12 11 9 35 35 H 1.08998 * 109.78891 * 252.39406 * 12 11 9 36 36 H 1.09006 * 110.36147 * 208.13689 * 15 13 12 37 37 H 1.08998 * 110.36801 * 330.45184 * 15 13 12 38 38 H 1.09003 * 110.30840 * 241.24598 * 16 15 13 39 39 H 1.08996 * 110.62014 * 118.90827 * 16 15 13 40 40 H 1.09003 * 109.74934 * 346.89745 * 19 11 9 41 41 H 1.09000 * 109.75504 * 107.63087 * 19 11 9 42 42 H 0.96999 * 120.00036 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6037 -0.6053 0.0043 6 17 5.1013 -1.4834 0.0116 7 6 2.3532 -1.1315 -0.0005 8 6 1.9581 -2.5857 0.0000 9 6 1.8252 -3.0707 -1.4206 10 8 2.0313 -2.3104 -2.3427 11 7 1.4771 -4.3493 -1.6664 12 6 1.3433 -4.8396 -3.0475 13 6 2.0923 -6.1798 -3.1519 14 1 2.0636 -6.5880 -4.1622 15 6 3.5383 -5.9700 -2.6483 16 6 3.4695 -6.2461 -1.1265 17 6 1.9884 -6.5956 -0.8566 18 1 1.8680 -7.3276 -0.0580 19 6 1.2238 -5.2853 -0.5594 20 7 1.4867 -7.0995 -2.1584 21 6 0.6539 -8.1617 -2.3888 22 1 -0.0405 -8.4790 -1.6249 23 6 0.7022 -8.8308 -3.6041 24 7 -0.2830 -9.6300 -3.9549 25 14 2.1653 -8.5968 -4.7415 26 1 1.8906 -7.4773 -5.6776 27 1 3.3732 -8.2838 -3.9363 28 1 2.3954 -9.8435 -5.5148 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3632 -0.8898 -0.5142 32 1 1.0044 -2.7029 0.5147 33 1 2.7221 -3.1696 0.5133 34 1 1.7804 -4.1186 -3.7383 35 1 0.2900 -4.9867 -3.2864 36 1 4.2149 -6.6733 -3.1340 37 1 3.8593 -4.9448 -2.8327 38 1 3.7567 -5.3557 -0.5671 39 1 4.1122 -7.0848 -0.8591 40 1 1.5828 -4.8556 0.3758 41 1 0.1554 -5.4885 -0.4859 42 1 -0.2494 -10.0972 -4.8043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029514677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:28 Heat of formation + Delta-G solvation = 72.749329 kcal Electronic energy + Delta-G solvation = -28407.535395 eV Core-core repulsion = 24418.656327 eV Total energy + Delta-G solvation = -3988.879068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -45.24589 -40.40934 -38.30420 -37.41880 -35.50999 -34.10204 -32.68312 -32.44393 -31.16445 -30.00274 -29.30741 -28.75742 -26.27258 -24.40703 -23.62316 -22.37432 -21.68922 -20.33587 -20.08108 -18.71294 -18.10566 -17.84130 -17.27415 -16.52218 -16.02971 -15.84597 -15.30241 -15.06135 -14.32938 -13.74823 -13.68710 -13.60974 -13.50457 -13.29424 -13.26672 -13.00679 -12.91581 -12.63724 -12.54279 -12.40612 -12.16248 -12.09623 -11.82922 -11.38203 -11.13244 -11.08430 -10.94207 -10.63093 -10.29255 -10.23359 -9.96509 -9.93817 -9.74879 -9.50968 -9.33396 -8.83546 -8.37892 -7.13306 -6.05960 -3.44605 0.83486 1.02443 1.83583 2.76137 3.18986 3.22978 3.38841 3.40164 3.44019 3.80426 4.28927 4.41443 4.56658 4.59727 4.63484 4.77493 5.09712 5.14714 5.23319 5.30567 5.31320 5.32942 5.37380 5.42652 5.44065 5.48847 5.55172 5.76794 5.83459 5.91768 6.06674 6.11180 6.24333 6.28253 6.32307 6.35310 6.57059 6.69002 6.86591 7.54013 7.69173 7.85328 8.21316 8.34558 8.65690 9.53680 10.10316 11.09952 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003499 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.107403 B = 7999.806479 C = 8533.994622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.045 3.955 3 N -0.349 5.349 4 O 0.108 5.892 5 C 0.011 3.989 6 Cl 0.049 6.951 7 C -0.145 4.145 8 C -0.067 4.067 9 C 0.512 3.488 10 O -0.545 6.545 11 N -0.590 5.590 12 C 0.105 3.895 13 C 0.121 3.879 14 H 0.082 0.918 15 C -0.130 4.130 16 C -0.123 4.123 17 C 0.137 3.863 18 H 0.090 0.910 19 C 0.091 3.909 20 N -0.596 5.596 21 C -0.241 4.241 22 H 0.092 0.908 23 C 0.028 3.972 24 N -0.909 5.909 25 Si 0.880 3.120 26 H -0.286 1.286 27 H -0.262 1.262 28 H -0.303 1.303 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.354 15.219 11.564 20.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.056 5.056 4 O 0.042 5.958 5 C -0.079 4.079 6 Cl 0.077 6.923 7 C -0.150 4.150 8 C -0.108 4.108 9 C 0.299 3.701 10 O -0.424 6.424 11 N -0.322 5.322 12 C -0.019 4.019 13 C 0.014 3.986 14 H 0.099 0.901 15 C -0.169 4.169 16 C -0.162 4.162 17 C 0.029 3.971 18 H 0.108 0.892 19 C -0.033 4.033 20 N -0.319 5.319 21 C -0.368 4.368 22 H 0.110 0.890 23 C -0.172 4.172 24 N -0.551 5.551 25 Si 0.711 3.289 26 H -0.214 1.214 27 H -0.187 1.187 28 H -0.231 1.231 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.130 0.870 33 H 0.127 0.873 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.207 16.569 10.925 20.794 hybrid contribution 0.949 -0.917 -0.825 1.556 sum 7.155 15.652 10.099 19.955 Atomic orbital electron populations 1.20229 0.85228 1.04508 1.03524 1.23244 0.99080 0.87711 1.01365 1.73903 0.88495 1.22893 1.20340 1.84889 1.22140 1.20574 1.68206 1.24468 0.90882 0.84921 1.07604 1.98458 1.28224 1.68949 1.96666 1.20150 0.90055 0.96907 1.07891 1.20029 1.04788 0.89280 0.96654 1.20191 0.77546 0.81910 0.90431 1.90694 1.51073 1.54586 1.46003 1.48020 1.66890 1.09080 1.08221 1.22323 1.01428 0.96447 0.81671 1.22219 0.91638 0.89402 0.95356 0.90086 1.22682 0.97584 1.00379 0.96292 1.22541 0.97726 0.99982 0.95978 1.22147 0.90993 0.92771 0.91195 0.89176 1.22730 1.01338 0.91486 0.87786 1.45455 1.55221 1.31127 1.00050 1.18593 1.11282 1.04514 1.02369 0.89033 1.25142 0.97404 0.96618 0.97999 1.69756 1.30682 1.31887 1.22792 0.86934 0.85488 0.75695 0.80734 1.21439 1.18668 1.23081 0.89707 0.90072 0.89638 0.86990 0.87258 0.90179 0.91089 0.91917 0.92126 0.92621 0.91952 0.90893 0.90819 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.39 36.01 0.37 -0.31 16 2 C 0.04 0.54 7.32 -82.12 -0.60 -0.06 16 3 N -0.35 -4.67 12.07 33.44 0.40 -4.27 16 4 O 0.11 1.40 11.20 17.10 0.19 1.59 16 5 C 0.01 0.14 8.12 29.82 0.24 0.38 16 6 Cl 0.05 0.50 29.23 -51.86 -1.52 -1.01 16 7 C -0.14 -1.73 4.82 -104.38 -0.50 -2.24 16 8 C -0.07 -0.71 4.48 -29.04 -0.13 -0.84 16 9 C 0.51 7.50 7.70 -10.99 -0.08 7.42 16 10 O -0.55 -9.96 15.50 5.56 0.09 -9.88 16 11 N -0.59 -9.03 2.29 -171.09 -0.39 -9.42 16 12 C 0.11 1.92 5.93 -3.22 -0.02 1.90 16 13 C 0.12 2.42 2.83 -65.66 -0.19 2.24 16 14 H 0.08 1.81 3.15 -51.93 -0.16 1.65 16 15 C -0.13 -2.28 6.01 -24.96 -0.15 -2.43 16 16 C -0.12 -1.87 6.24 -24.96 -0.16 -2.02 16 17 C 0.14 2.25 4.32 -65.27 -0.28 1.97 16 18 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 19 C 0.09 1.24 5.85 -2.84 -0.02 1.22 16 20 N -0.60 -12.76 2.50 -152.16 -0.38 -13.14 16 21 C -0.24 -6.23 10.76 -15.06 -0.16 -6.39 16 22 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 23 C 0.03 0.77 5.49 -17.43 -0.10 0.67 16 24 N -0.91 -26.76 13.97 55.49 0.78 -25.99 16 25 Si 0.88 21.35 24.67 -169.99 -4.19 17.16 16 26 H -0.29 -6.83 6.68 56.52 0.38 -6.46 16 27 H -0.26 -6.05 5.34 56.52 0.30 -5.75 16 28 H -0.30 -7.58 7.11 56.52 0.40 -7.17 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.11 0.91 8.06 -51.93 -0.42 0.49 16 33 H 0.11 0.97 7.59 -51.93 -0.39 0.57 16 34 H 0.08 1.46 7.11 -51.93 -0.37 1.09 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.06 1.14 6.82 -51.93 -0.35 0.79 16 37 H 0.06 1.01 7.86 -51.93 -0.41 0.60 16 38 H 0.06 0.71 7.87 -51.93 -0.41 0.30 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 0.71 6.09 -51.93 -0.32 0.39 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 348.69 15.07 5.25 5.25 Total: -1.00 -31.64 348.69 -7.01 -38.65 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -5.47 Total: -0.45 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -1.77 Total: 1.50 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: 0.41 Total: -52.82 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: 0.28 Total: -8.28 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.19 Total: 17.16 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -1.52 Total: -1.01 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.64 -7.01 -38.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029514677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.399 kcal (2) G-P(sol) polarization free energy of solvation -31.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds