Wall clock time and date at job start Tue Mar 31 2020 22:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30215 * 126.78998 * 2 1 4 4 O 1.20913 * 111.65001 * 180.02562 * 3 2 1 5 5 C 1.34071 * 111.55209 * 359.75893 * 4 3 2 6 6 Cl 1.73601 * 126.80016 * 180.25388 * 5 4 3 7 7 C 1.35678 * 106.40492 * 0.38270 * 5 4 3 8 8 C 1.50696 * 128.01445 * 179.91180 * 7 5 4 9 9 C 1.50696 * 109.47001 * 269.67317 * 8 7 5 10 10 O 1.21280 * 120.00203 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99912 * 180.02562 * 9 8 7 12 12 C 1.47165 * 120.71259 * 180.02562 * 11 9 8 13 13 C 1.53888 * 108.03358 * 132.73688 * 12 11 9 14 14 H 1.09006 * 112.09741 * 181.91309 * 13 12 11 15 15 C 1.54551 * 108.36533 * 306.25094 * 13 12 11 16 16 C 1.54822 * 104.74198 * 89.17721 * 15 13 12 17 17 C 1.54547 * 104.74727 * 359.97438 * 16 15 13 18 18 H 1.09002 * 112.68318 * 146.81265 * 17 16 15 19 19 C 1.47163 * 120.71115 * 359.97438 * 11 9 8 20 20 N 1.48310 * 107.20892 * 58.36028 * 13 12 11 21 21 C 1.36931 * 128.07510 * 106.09930 * 20 13 12 22 22 H 1.07999 * 119.99336 * 206.48646 * 21 20 13 23 23 C 1.38810 * 120.00451 * 26.48965 * 21 20 13 24 24 N 1.31620 * 120.00074 * 195.95308 * 23 21 20 25 25 Si 1.86800 * 119.99846 * 15.94627 * 23 21 20 26 26 H 1.48495 * 109.47649 * 268.92191 * 25 23 21 27 27 H 1.48500 * 109.46922 * 28.92678 * 25 23 21 28 28 H 1.48497 * 109.46718 * 148.92005 * 25 23 21 29 29 H 1.09004 * 109.47042 * 269.97958 * 1 2 3 30 30 H 1.09001 * 109.46693 * 29.98147 * 1 2 3 31 31 H 1.08994 * 109.46671 * 149.97667 * 1 2 3 32 32 H 1.09004 * 109.46598 * 149.67662 * 8 7 5 33 33 H 1.08995 * 109.47274 * 29.67795 * 8 7 5 34 34 H 1.09000 * 109.74788 * 13.10365 * 12 11 9 35 35 H 1.08998 * 109.78891 * 252.39406 * 12 11 9 36 36 H 1.09006 * 110.36147 * 208.13689 * 15 13 12 37 37 H 1.08998 * 110.36801 * 330.45184 * 15 13 12 38 38 H 1.09003 * 110.30840 * 241.24598 * 16 15 13 39 39 H 1.08996 * 110.62014 * 118.90827 * 16 15 13 40 40 H 1.09003 * 109.74934 * 346.89745 * 19 11 9 41 41 H 1.09000 * 109.75504 * 107.63087 * 19 11 9 42 42 H 0.96999 * 120.00036 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0428 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6037 -0.6053 0.0043 6 17 5.1013 -1.4834 0.0116 7 6 2.3532 -1.1315 -0.0005 8 6 1.9581 -2.5857 0.0000 9 6 1.8252 -3.0707 -1.4206 10 8 2.0313 -2.3104 -2.3427 11 7 1.4771 -4.3493 -1.6664 12 6 1.3433 -4.8396 -3.0475 13 6 2.0923 -6.1798 -3.1519 14 1 2.0636 -6.5880 -4.1622 15 6 3.5383 -5.9700 -2.6483 16 6 3.4695 -6.2461 -1.1265 17 6 1.9884 -6.5956 -0.8566 18 1 1.8680 -7.3276 -0.0580 19 6 1.2238 -5.2853 -0.5594 20 7 1.4867 -7.0995 -2.1584 21 6 0.6539 -8.1617 -2.3888 22 1 -0.0405 -8.4790 -1.6249 23 6 0.7022 -8.8308 -3.6041 24 7 -0.2830 -9.6300 -3.9549 25 14 2.1653 -8.5968 -4.7415 26 1 1.8906 -7.4773 -5.6776 27 1 3.3732 -8.2838 -3.9363 28 1 2.3954 -9.8435 -5.5148 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3632 -0.8898 -0.5142 32 1 1.0044 -2.7029 0.5147 33 1 2.7221 -3.1696 0.5133 34 1 1.7804 -4.1186 -3.7383 35 1 0.2900 -4.9867 -3.2864 36 1 4.2149 -6.6733 -3.1340 37 1 3.8593 -4.9448 -2.8327 38 1 3.7567 -5.3557 -0.5671 39 1 4.1122 -7.0848 -0.8591 40 1 1.5828 -4.8556 0.3758 41 1 0.1554 -5.4885 -0.4859 42 1 -0.2494 -10.0972 -4.8043 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029514677.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:27 Heat of formation + Delta-G solvation = 53.138644 kcal Electronic energy + Delta-G solvation = -28408.385778 eV Core-core repulsion = 24418.656327 eV Total energy + Delta-G solvation = -3989.729451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.13485 -41.70255 -39.60471 -38.25475 -36.39889 -35.54531 -34.30194 -33.56139 -32.47844 -31.69698 -30.22632 -29.58599 -27.65918 -25.70236 -25.32178 -23.39566 -22.55081 -21.78348 -21.37190 -20.11106 -19.09023 -18.78068 -18.54932 -18.11343 -17.34357 -17.02647 -16.62383 -16.29657 -15.45294 -15.30857 -15.11369 -14.81595 -14.67707 -14.39639 -14.24288 -14.12327 -14.07400 -13.73415 -13.59761 -13.44100 -13.43917 -13.14506 -13.00911 -12.86977 -12.76459 -12.47710 -12.19370 -11.94843 -11.77257 -11.56659 -11.44033 -11.26267 -11.16290 -10.91410 -10.66698 -10.25483 -9.81191 -8.87428 -8.16102 -5.47658 -0.02366 0.14396 0.96430 1.27027 1.38542 1.46852 1.65130 2.06089 2.40863 2.52209 2.99279 3.02919 3.23943 3.47086 3.56560 3.76748 3.85042 3.89242 4.00596 4.06968 4.15692 4.33393 4.39573 4.43127 4.53154 4.61753 4.63739 4.66087 4.69322 4.74131 4.83225 4.87303 4.91556 5.04163 5.07587 5.15038 5.25488 5.37818 5.55554 5.75386 6.15590 6.53896 6.72574 6.97398 7.19322 7.52008 8.21165 9.04128 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.003499 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.107403 B = 7999.806479 C = 8533.994622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.041 3.959 3 N -0.374 5.374 4 O 0.094 5.906 5 C 0.007 3.993 6 Cl 0.063 6.937 7 C -0.153 4.153 8 C -0.061 4.061 9 C 0.516 3.484 10 O -0.584 6.584 11 N -0.590 5.590 12 C 0.115 3.885 13 C 0.112 3.888 14 H 0.053 0.947 15 C -0.126 4.126 16 C -0.114 4.114 17 C 0.129 3.871 18 H 0.100 0.900 19 C 0.097 3.903 20 N -0.616 5.616 21 C -0.212 4.212 22 H 0.067 0.933 23 C -0.033 4.033 24 N -0.960 5.960 25 Si 0.934 3.066 26 H -0.288 1.288 27 H -0.243 1.243 28 H -0.318 1.318 29 H 0.111 0.889 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.067 0.933 40 H 0.128 0.872 41 H 0.066 0.934 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.773 16.759 14.235 23.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.118 4.118 3 N -0.084 5.084 4 O 0.031 5.969 5 C -0.084 4.084 6 Cl 0.091 6.909 7 C -0.159 4.159 8 C -0.100 4.100 9 C 0.305 3.695 10 O -0.464 6.464 11 N -0.322 5.322 12 C -0.010 4.010 13 C 0.005 3.995 14 H 0.071 0.929 15 C -0.165 4.165 16 C -0.153 4.153 17 C 0.023 3.977 18 H 0.118 0.882 19 C -0.026 4.026 20 N -0.339 5.339 21 C -0.341 4.341 22 H 0.085 0.915 23 C -0.228 4.228 24 N -0.607 5.607 25 Si 0.766 3.234 26 H -0.217 1.217 27 H -0.167 1.167 28 H -0.247 1.247 29 H 0.130 0.870 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.164 0.836 33 H 0.156 0.844 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.089 0.911 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.146 0.854 41 H 0.084 0.916 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.683 18.155 13.654 23.981 hybrid contribution 0.481 -1.300 -1.581 2.103 sum 8.164 16.855 12.073 22.282 Atomic orbital electron populations 1.20377 0.83345 1.04570 1.05262 1.23796 1.00381 0.87510 1.00073 1.73905 0.88820 1.23862 1.21768 1.84859 1.22205 1.21202 1.68671 1.24756 0.91747 0.84806 1.07050 1.98460 1.27432 1.68450 1.96560 1.20361 0.89852 0.97564 1.08082 1.20148 1.07581 0.88499 0.93819 1.20846 0.75952 0.80876 0.91821 1.90693 1.52508 1.55428 1.47783 1.48029 1.67119 1.09873 1.07176 1.21935 0.99680 0.95461 0.83938 1.22285 0.93637 0.89689 0.93848 0.92926 1.22629 0.95113 1.00749 0.98020 1.22527 0.96551 1.01869 0.94319 1.22490 0.92183 0.94122 0.88901 0.88200 1.22778 1.00791 0.89941 0.89118 1.45529 1.55148 1.30400 1.02849 1.18524 1.10344 1.04300 1.00911 0.91521 1.25696 0.99513 0.97572 0.99977 1.69886 1.32780 1.34553 1.23477 0.86040 0.83594 0.74539 0.79196 1.21658 1.16740 1.24722 0.87045 0.90153 0.89405 0.83575 0.84408 0.90563 0.93301 0.92852 0.91073 0.89019 0.91382 0.85445 0.91598 0.93141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.16 10.39 71.24 0.74 -0.42 16 2 C 0.04 0.88 7.32 43.55 0.32 1.20 16 3 N -0.37 -9.44 12.07 -49.42 -0.60 -10.03 16 4 O 0.09 2.31 11.20 71.36 0.80 3.11 16 5 C 0.01 0.14 8.12 67.23 0.55 0.69 16 6 Cl 0.06 1.10 29.23 -2.72 -0.08 1.02 16 7 C -0.15 -3.14 4.82 -19.71 -0.10 -3.23 16 8 C -0.06 -0.97 4.48 29.10 0.13 -0.84 16 9 C 0.52 13.15 7.70 87.66 0.67 13.82 16 10 O -0.58 -19.96 15.50 -3.03 -0.05 -20.00 16 11 N -0.59 -16.08 2.29 -813.60 -1.86 -17.94 16 12 C 0.12 4.06 5.93 86.55 0.51 4.58 16 13 C 0.11 4.36 2.83 45.47 0.13 4.49 16 14 H 0.05 2.35 3.15 -2.38 -0.01 2.35 16 15 C -0.13 -4.04 6.01 31.74 0.19 -3.85 16 16 C -0.11 -2.92 6.24 31.74 0.20 -2.72 16 17 C 0.13 3.77 4.32 45.71 0.20 3.97 16 18 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 19 C 0.10 2.20 5.85 86.79 0.51 2.71 16 20 N -0.62 -25.58 2.50 -635.31 -1.59 -27.16 16 21 C -0.21 -11.08 10.76 84.03 0.90 -10.18 16 22 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16 23 C -0.03 -1.85 5.49 84.86 0.47 -1.39 16 24 N -0.96 -58.82 13.97 21.65 0.30 -58.52 16 25 Si 0.93 45.41 24.67 68.60 1.69 47.10 16 26 H -0.29 -13.84 6.68 99.48 0.66 -13.17 16 27 H -0.24 -10.87 5.34 99.48 0.53 -10.34 16 28 H -0.32 -16.01 7.11 99.48 0.71 -15.30 16 29 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.15 1.41 8.06 -2.39 -0.02 1.39 16 33 H 0.14 1.47 7.59 -2.39 -0.02 1.45 16 34 H 0.08 2.74 7.11 -2.39 -0.02 2.73 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.05 1.80 6.82 -2.38 -0.02 1.79 16 37 H 0.07 2.13 7.86 -2.39 -0.02 2.11 16 38 H 0.09 1.74 7.87 -2.39 -0.02 1.72 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.13 1.56 6.09 -2.39 -0.01 1.54 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -72.53 348.69 4.89 -67.64 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: 0.84 Total: 5.98 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.42 Total: 8.81 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -3.74 Total: -113.66 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: 0.75 Total: -16.90 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 1.69 Total: 47.10 kcal Atomic # 17 Polarization: 1.10 SS G_CDS: -0.08 Total: 1.02 kcal Total: -72.53 4.89 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029514677.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.783 kcal (2) G-P(sol) polarization free energy of solvation -72.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds