Wall clock time and date at job start Tue Mar 31 2020 22:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30211 * 126.79332 * 2 1 4 4 O 1.20917 * 111.65579 * 180.02562 * 3 2 1 5 5 C 1.34075 * 111.54404 * 359.75957 * 4 3 2 6 6 Cl 1.73602 * 126.79783 * 180.25736 * 5 4 3 7 7 C 1.35675 * 106.40785 * 0.38215 * 5 4 3 8 8 C 1.50697 * 128.01521 * 179.90836 * 7 5 4 9 9 C 1.52997 * 109.47466 * 269.68017 * 8 7 5 10 10 C 1.50701 * 109.47212 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99781 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99795 * 179.97438 * 10 9 8 13 13 C 1.47861 * 126.94411 * 359.69090 * 12 10 9 14 14 C 1.55997 * 105.11439 * 181.87201 * 13 12 10 15 15 H 1.09000 * 116.17399 * 159.89629 * 14 13 12 16 16 C 1.57089 * 99.47610 * 33.16410 * 14 13 12 17 17 C 1.49289 * 126.94251 * 179.97438 * 12 10 9 18 18 H 1.09005 * 116.15050 * 15.84414 * 17 12 10 19 19 C 1.56014 * 104.09551 * 246.70130 * 17 12 10 20 20 N 1.47866 * 105.10515 * 288.77067 * 19 17 12 21 21 C 1.36940 * 126.94369 * 181.98126 * 20 19 17 22 22 H 1.08000 * 119.99588 * 180.02562 * 21 20 19 23 23 C 1.38813 * 119.99835 * 0.02562 * 21 20 19 24 24 N 1.31616 * 120.00358 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99488 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47426 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47183 * 120.00395 * 25 23 21 28 28 H 1.48507 * 109.46716 * 239.99919 * 25 23 21 29 29 H 1.09000 * 109.47165 * 269.97615 * 1 2 3 30 30 H 1.09003 * 109.47337 * 29.97583 * 1 2 3 31 31 H 1.08995 * 109.47513 * 149.97681 * 1 2 3 32 32 H 1.09002 * 109.47120 * 149.67770 * 8 7 5 33 33 H 1.08998 * 109.46862 * 29.68572 * 8 7 5 34 34 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 35 35 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 36 36 H 1.08997 * 110.32106 * 300.90356 * 13 12 10 37 37 H 1.08997 * 110.31897 * 63.09512 * 13 12 10 38 38 H 1.09003 * 112.37067 * 191.51791 * 16 14 13 39 39 H 1.08999 * 112.36985 * 64.07083 * 16 14 13 40 40 H 1.09003 * 110.31309 * 47.67890 * 19 17 12 41 41 H 1.08999 * 110.31581 * 169.85588 * 19 17 12 42 42 H 0.96995 * 119.99827 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0427 0.0000 4 8 3.4540 0.7270 -0.0005 5 6 3.6036 -0.6054 0.0043 6 17 5.1011 -1.4836 0.0117 7 6 2.3530 -1.1315 -0.0006 8 6 1.9579 -2.5857 -0.0001 9 6 1.8230 -3.0781 -1.4424 10 6 1.4285 -4.5326 -1.4418 11 8 1.2703 -5.1176 -0.3913 12 7 1.2504 -5.1829 -2.6088 13 6 1.3939 -4.6223 -3.9695 14 6 1.0272 -5.7934 -4.9327 15 1 0.7427 -5.5111 -5.9463 16 6 -0.0584 -6.5173 -4.0580 17 6 0.8627 -6.6133 -2.7888 18 1 0.4519 -7.1137 -1.9119 19 6 2.1235 -7.2708 -3.4309 20 7 2.1722 -6.7432 -4.8114 21 6 3.0840 -7.0614 -5.7824 22 1 3.0140 -6.6056 -6.7590 23 6 4.0981 -7.9697 -5.5113 24 7 4.1830 -8.5256 -4.3213 25 14 5.3422 -8.4032 -6.8356 26 1 5.0296 -7.6473 -8.0750 27 1 6.7062 -8.0461 -6.3694 28 1 5.2803 -9.8604 -7.1150 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 1.0043 -2.7030 0.5146 33 1 2.7219 -3.1696 0.5133 34 1 2.7767 -2.9609 -1.9570 35 1 1.0590 -2.4942 -1.9556 36 1 0.7083 -3.7866 -4.1088 37 1 2.4217 -4.3022 -4.1405 38 1 -0.3232 -7.4980 -4.4533 39 1 -0.9365 -5.8945 -3.8873 40 1 3.0209 -6.9824 -2.8836 41 1 2.0195 -8.3557 -3.4438 42 1 4.8914 -9.1606 -4.1321 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032811646.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:49:13 Heat of formation + Delta-G solvation = 76.316844 kcal Electronic energy + Delta-G solvation = -27289.897340 eV Core-core repulsion = 23301.172971 eV Total energy + Delta-G solvation = -3988.724369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -45.31160 -40.12204 -38.13423 -37.42895 -35.96883 -33.66837 -33.29734 -31.69109 -30.64102 -29.13632 -28.95707 -28.57711 -25.57369 -25.16867 -23.37458 -21.86106 -21.58767 -20.35081 -19.87580 -18.45840 -18.09485 -17.94431 -17.21991 -16.34984 -15.96034 -15.71170 -15.16274 -14.80840 -14.16427 -13.88070 -13.73786 -13.59529 -13.43979 -13.21807 -12.95089 -12.77839 -12.69472 -12.38817 -12.23945 -12.02851 -11.85870 -11.69624 -11.40111 -11.32789 -11.04089 -10.95249 -10.90157 -10.81649 -10.64496 -10.28027 -10.22192 -10.08734 -9.68522 -9.60651 -9.32701 -8.74500 -8.04161 -6.96802 -5.80608 -3.15349 0.85078 0.94055 1.77183 2.99675 3.27239 3.34430 3.39699 3.42463 3.42831 3.75196 4.27623 4.38436 4.54696 4.63537 4.93774 4.96575 5.11259 5.14974 5.15657 5.18081 5.29031 5.35156 5.39165 5.52365 5.54997 5.59302 5.71411 5.73663 5.84884 5.91661 6.02358 6.14394 6.25061 6.36689 6.45141 6.55714 6.65015 7.38981 7.45029 7.68555 7.78300 8.04529 8.07871 8.53874 9.06485 9.67382 10.36076 11.31439 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013548 B = 0.003083 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.252877 B = 9079.323533 C =10185.172444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.034 3.966 3 N -0.350 5.350 4 O 0.108 5.892 5 C 0.000 4.000 6 Cl 0.054 6.946 7 C -0.163 4.163 8 C -0.029 4.029 9 C -0.130 4.130 10 C 0.528 3.472 11 O -0.556 6.556 12 N -0.606 5.606 13 C 0.083 3.917 14 C 0.140 3.860 15 H 0.106 0.894 16 C -0.150 4.150 17 C 0.097 3.903 18 H 0.114 0.886 19 C 0.174 3.826 20 N -0.597 5.597 21 C -0.232 4.232 22 H 0.081 0.919 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.912 3.088 26 H -0.279 1.279 27 H -0.291 1.291 28 H -0.290 1.290 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.055 0.945 42 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.013 15.233 7.122 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.125 4.125 3 N -0.056 5.056 4 O 0.041 5.959 5 C -0.090 4.090 6 Cl 0.082 6.918 7 C -0.167 4.167 8 C -0.067 4.067 9 C -0.170 4.170 10 C 0.317 3.683 11 O -0.436 6.436 12 N -0.339 5.339 13 C -0.043 4.043 14 C 0.031 3.969 15 H 0.124 0.876 16 C -0.190 4.190 17 C -0.005 4.005 18 H 0.131 0.869 19 C 0.049 3.951 20 N -0.322 5.322 21 C -0.360 4.360 22 H 0.099 0.901 23 C -0.202 4.202 24 N -0.565 5.565 25 Si 0.742 3.258 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.217 1.217 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.109 0.891 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.901 16.040 7.702 19.085 hybrid contribution 1.152 -1.011 -0.705 1.687 sum -5.750 15.029 6.997 17.547 Atomic orbital electron populations 1.20241 0.85151 1.04281 1.03866 1.23361 0.99173 0.87857 1.02102 1.73931 0.88593 1.23041 1.20025 1.84907 1.22054 1.20823 1.68132 1.24665 0.91368 0.84802 1.08188 1.98485 1.27964 1.68698 1.96624 1.20941 0.89787 0.98457 1.07546 1.19717 1.04079 0.86298 0.96610 1.21566 1.03913 0.93696 0.97834 1.20005 0.77347 0.88329 0.82614 1.90668 1.53159 1.69226 1.30551 1.49225 1.66787 1.12448 1.05414 1.23305 1.00942 0.97521 0.82533 1.23165 0.88653 0.89261 0.95775 0.87600 1.24150 0.96580 1.01504 0.96763 1.24356 0.97823 0.81386 0.96944 0.86855 1.21924 0.92249 0.96727 0.84199 1.45246 1.29164 1.47707 1.10038 1.19090 1.04251 1.20735 0.91925 0.90100 1.24819 0.99073 0.99329 0.96993 1.69924 1.34341 1.32339 1.19889 0.86054 0.81154 0.77956 0.80602 1.20443 1.21772 1.21710 0.89698 0.90151 0.89452 0.89022 0.89109 0.88874 0.89145 0.92815 0.91091 0.89794 0.91669 0.93495 0.92649 0.93617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.39 36.00 0.37 -0.20 16 2 C 0.03 0.36 7.32 -82.12 -0.60 -0.25 16 3 N -0.35 -4.24 12.07 33.44 0.40 -3.84 16 4 O 0.11 1.29 11.20 17.09 0.19 1.49 16 5 C 0.00 0.00 8.12 29.82 0.24 0.24 16 6 Cl 0.05 0.58 29.23 -51.86 -1.52 -0.94 16 7 C -0.16 -1.79 5.58 -104.38 -0.58 -2.38 16 8 C -0.03 -0.33 4.90 -27.89 -0.14 -0.47 16 9 C -0.13 -1.62 4.97 -27.88 -0.14 -1.76 16 10 C 0.53 8.81 7.90 -10.98 -0.09 8.72 16 11 O -0.56 -10.88 16.33 5.56 0.09 -10.79 16 12 N -0.61 -10.48 2.95 -156.78 -0.46 -10.94 16 13 C 0.08 1.32 6.01 -1.69 -0.01 1.31 16 14 C 0.14 2.48 5.52 -62.57 -0.35 2.14 16 15 H 0.11 1.67 8.14 -51.93 -0.42 1.25 16 16 C -0.15 -2.42 6.81 -22.28 -0.15 -2.58 16 17 C 0.10 1.81 5.24 -62.54 -0.33 1.48 16 18 H 0.11 2.06 8.05 -51.93 -0.42 1.64 16 19 C 0.17 4.06 4.77 -1.68 -0.01 4.06 16 20 N -0.60 -13.94 3.03 -156.37 -0.47 -14.42 16 21 C -0.23 -6.04 10.37 -15.06 -0.16 -6.19 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.14 5.49 -17.43 -0.10 -0.24 16 24 N -0.92 -26.32 10.56 55.49 0.59 -25.74 16 25 Si 0.91 21.38 29.55 -169.99 -5.02 16.35 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 33 H 0.09 1.14 8.10 -51.93 -0.42 0.72 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 41 H 0.06 1.43 7.46 -51.93 -0.39 1.05 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 LS Contribution 366.57 15.07 5.52 5.52 Total: -1.00 -31.16 366.57 -8.52 -39.68 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -5.82 Total: -0.28 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -2.02 Total: 3.88 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.05 Total: -54.93 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.28 Total: -9.30 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 17 Polarization: 0.58 SS G_CDS: -1.52 Total: -0.94 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.16 -8.52 -39.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032811646.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.001 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds