Wall clock time and date at job start Tue Mar 31 2020 22:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48503 * 109.46966 * 5.84863 * 3 2 1 5 5 H 1.48503 * 109.47194 * 125.84411 * 3 2 1 6 6 H 1.48499 * 109.47542 * 245.84228 * 3 2 1 7 7 C 1.38809 * 120.00513 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99536 * 339.08094 * 7 2 1 9 9 N 1.36933 * 120.00474 * 159.07876 * 7 2 1 10 10 C 1.47085 * 125.62804 * 356.00221 * 9 7 2 11 11 C 1.54454 * 107.29686 * 180.96671 * 10 9 7 12 12 C 1.54388 * 102.86973 * 21.51110 * 11 10 9 13 13 C 1.47575 * 125.63086 * 175.70023 * 9 7 2 14 14 C 1.52109 * 110.50785 * 207.35557 * 12 11 10 15 15 C 1.53337 * 109.44494 * 295.90237 * 14 12 11 16 16 N 1.46930 * 108.68971 * 306.70857 * 15 14 12 17 17 C 1.34784 * 120.55139 * 234.36427 * 16 15 14 18 18 O 1.21575 * 120.00115 * 185.58857 * 17 16 15 19 19 C 1.47523 * 119.99976 * 5.59377 * 17 16 15 20 20 C 1.36777 * 126.93134 * 187.54189 * 19 17 16 21 21 C 1.41405 * 103.84031 * 179.97438 * 20 19 17 22 22 Cl 1.73604 * 126.72499 * 180.02562 * 21 20 19 23 23 N 1.30221 * 106.54897 * 359.97438 * 21 20 19 24 24 O 1.20878 * 111.96304 * 359.69994 * 23 21 20 25 25 C 1.46937 * 118.89877 * 54.34190 * 16 15 14 26 26 C 1.52105 * 110.51286 * 83.32681 * 12 11 10 27 27 H 0.97000 * 119.99697 * 185.01149 * 1 2 3 28 28 H 1.08996 * 109.87658 * 300.39480 * 10 9 7 29 29 H 1.09000 * 109.87313 * 61.54399 * 10 9 7 30 30 H 1.09001 * 110.73154 * 139.85158 * 11 10 9 31 31 H 1.08999 * 110.73703 * 263.16637 * 11 10 9 32 32 H 1.08998 * 110.37749 * 275.52638 * 13 9 7 33 33 H 1.09007 * 110.37484 * 37.87196 * 13 9 7 34 34 H 1.08999 * 109.47568 * 55.89902 * 14 12 11 35 35 H 1.08999 * 109.47363 * 175.91189 * 14 12 11 36 36 H 1.08997 * 109.60502 * 186.94412 * 15 14 12 37 37 H 1.08999 * 109.60090 * 66.46526 * 15 14 12 38 38 H 1.08001 * 128.08259 * 0.03422 * 20 19 17 39 39 H 1.09003 * 109.60260 * 185.89314 * 25 16 15 40 40 H 1.09001 * 109.60081 * 65.41011 * 25 16 15 41 41 H 1.09000 * 109.47915 * 184.07735 * 26 12 11 42 42 H 1.09001 * 109.47479 * 304.09970 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2914 2.7428 0.1427 5 1 3.2077 1.6366 1.1349 6 1 2.9939 1.7601 -1.2774 7 6 2.0103 -1.2021 -0.0005 8 1 1.5237 -2.1067 0.3330 9 7 3.3120 -1.2410 -0.4240 10 6 4.0666 -0.1071 -0.9793 11 6 5.4767 -0.6253 -1.3375 12 6 5.2598 -2.1481 -1.4712 13 6 4.1911 -2.4258 -0.3928 14 6 6.5448 -2.8990 -1.1570 15 6 7.6126 -2.5413 -2.1977 16 7 7.0602 -2.7760 -3.5388 17 6 7.7058 -3.5695 -4.4165 18 8 7.2948 -3.6764 -5.5557 19 6 8.9110 -4.3083 -3.9947 20 6 9.7526 -5.0324 -4.7936 21 6 10.7294 -5.5248 -3.8974 22 17 12.0917 -6.5250 -4.2939 23 7 10.4073 -5.0799 -2.7167 24 8 9.4085 -4.3997 -2.7468 25 6 5.7920 -2.1318 -3.9072 26 6 4.7347 -2.4921 -2.8566 27 1 -0.4850 -0.8369 0.0734 28 1 3.5699 0.2655 -1.8751 29 1 4.1413 0.6874 -0.2368 30 1 5.8159 -0.1996 -2.2819 31 1 6.1837 -0.4050 -0.5377 32 1 4.6556 -2.5281 0.5880 33 1 3.6262 -3.3243 -0.6416 34 1 6.8964 -2.6181 -0.1642 35 1 6.3548 -3.9719 -1.1853 36 1 8.4920 -3.1679 -2.0497 37 1 7.8871 -1.4915 -2.0940 38 1 9.6871 -5.1903 -5.8600 39 1 5.4713 -2.4886 -4.8860 40 1 5.9258 -1.0504 -3.9354 41 1 4.5192 -3.5593 -2.9090 42 1 3.8228 -1.9272 -3.0502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035249115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:33 Heat of formation + Delta-G solvation = 77.947074 kcal Electronic energy + Delta-G solvation = -27789.606517 eV Core-core repulsion = 23800.952840 eV Total energy + Delta-G solvation = -3988.653677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.40 seconds Orbital eigenvalues (eV) -45.71281 -40.72491 -39.02262 -37.64682 -36.33664 -34.29480 -33.43742 -32.69799 -31.40293 -31.03559 -29.09284 -27.50502 -25.04910 -24.32148 -23.70971 -23.09916 -22.78841 -21.22615 -20.41882 -18.97918 -18.52125 -17.94939 -17.20915 -17.01112 -16.48299 -15.58729 -15.54582 -15.38355 -15.07728 -14.55299 -14.21699 -13.91119 -13.77511 -13.45003 -13.28258 -13.25619 -13.05602 -12.88950 -12.53424 -12.35256 -11.88791 -11.60631 -11.48784 -11.32360 -11.22976 -10.97537 -10.73835 -10.60978 -10.45337 -10.37884 -10.31384 -10.26304 -9.91846 -9.48385 -8.95267 -8.91884 -8.55580 -7.06394 -6.30895 -3.17537 0.21174 0.90500 1.27863 1.97509 2.53306 2.69382 3.39680 3.49417 3.62469 3.70059 4.02151 4.16449 4.43030 4.60694 4.66477 4.71249 4.80391 4.93226 5.06807 5.11657 5.17589 5.25401 5.38200 5.48841 5.55950 5.60079 5.69005 5.76868 5.82659 5.90801 5.99262 6.09683 6.25124 6.28223 6.39933 6.43317 6.60739 6.72203 6.77634 6.88010 7.30377 7.58224 7.66841 8.33711 9.05677 9.59024 10.25167 11.19670 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.002490 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.738765 B =11244.002601 C =11474.294104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.025 4.025 3 Si 1.070 2.930 4 H -0.303 1.303 5 H -0.300 1.300 6 H -0.283 1.283 7 C -0.324 4.324 8 H 0.077 0.923 9 N -0.611 5.611 10 C 0.113 3.887 11 C -0.124 4.124 12 C -0.073 4.073 13 C 0.148 3.852 14 C -0.116 4.116 15 C 0.094 3.906 16 N -0.589 5.589 17 C 0.601 3.399 18 O -0.511 6.511 19 C -0.062 4.062 20 C -0.138 4.138 21 C 0.054 3.946 22 Cl 0.032 6.968 23 N -0.330 5.330 24 O 0.135 5.865 25 C 0.112 3.888 26 C -0.113 4.113 27 H 0.261 0.739 28 H 0.046 0.954 29 H 0.025 0.975 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.023 0.977 33 H 0.044 0.956 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.194 0.806 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.621 -9.145 -9.183 26.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.225 4.225 3 Si 0.904 3.096 4 H -0.231 1.231 5 H -0.229 1.229 6 H -0.210 1.210 7 C -0.451 4.451 8 H 0.095 0.905 9 N -0.339 5.339 10 C -0.012 4.012 11 C -0.162 4.162 12 C -0.075 4.075 13 C 0.022 3.978 14 C -0.154 4.154 15 C -0.028 4.028 16 N -0.321 5.321 17 C 0.386 3.614 18 O -0.387 6.387 19 C -0.128 4.128 20 C -0.161 4.161 21 C -0.129 4.129 22 Cl 0.060 6.940 23 N -0.033 5.033 24 O 0.062 5.938 25 C -0.009 4.009 26 C -0.151 4.151 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.100 0.900 38 H 0.212 0.788 39 H 0.114 0.886 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 23.746 -7.789 -8.665 26.450 hybrid contribution 0.307 -1.902 -0.392 1.966 sum 24.052 -9.691 -9.057 27.467 Atomic orbital electron populations 1.70929 1.05662 1.29687 1.50556 1.25753 0.96419 1.00914 0.99379 0.83856 0.73357 0.75950 0.76391 1.23091 1.22888 1.20993 1.20097 0.85099 0.96621 1.43315 0.90517 1.44875 1.10059 1.05026 1.73911 1.21979 0.90814 0.91554 0.96807 1.22679 0.97776 0.94707 1.00992 1.21131 0.94957 0.95311 0.96058 1.21516 0.90375 0.91514 0.94394 1.21730 0.94297 1.00933 0.98468 1.22341 0.97084 1.02627 0.80770 1.48093 1.23516 1.46121 1.14344 1.16578 0.80555 0.79137 0.85171 1.90884 1.65148 1.64673 1.18023 1.24289 0.99536 1.04287 0.84665 1.22747 0.92391 0.98295 1.02673 1.24043 0.96108 1.02191 0.90601 1.98433 1.38374 1.64878 1.92311 1.73850 1.00789 1.07349 1.21359 1.85214 1.29628 1.50363 1.28576 1.21946 0.81483 0.97595 0.99894 1.21676 0.98281 1.02251 0.92867 0.92908 0.93609 0.95733 0.91292 0.91423 0.95924 0.93814 0.89919 0.91229 0.88539 0.89985 0.78844 0.88607 0.90301 0.91564 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 51. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.92 13.70 55.49 0.76 -28.16 16 2 C -0.03 -0.73 5.49 -17.43 -0.10 -0.83 16 3 Si 1.07 26.37 24.57 -169.99 -4.18 22.19 16 4 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 5 H -0.30 -7.18 6.94 56.52 0.39 -6.78 16 6 H -0.28 -6.26 5.24 56.52 0.30 -5.97 16 7 C -0.32 -9.07 10.52 -15.06 -0.16 -9.23 16 8 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 9 N -0.61 -14.21 3.34 -170.18 -0.57 -14.78 16 10 C 0.11 2.30 4.20 -2.96 -0.01 2.29 16 11 C -0.12 -1.80 4.92 -25.24 -0.12 -1.93 16 12 C -0.07 -1.02 0.55 -153.99 -0.08 -1.10 16 13 C 0.15 2.73 6.16 -2.75 -0.02 2.72 16 14 C -0.12 -1.23 4.84 -27.01 -0.13 -1.36 16 15 C 0.09 0.86 6.07 -3.63 -0.02 0.84 16 16 N -0.59 -6.24 2.96 -173.81 -0.51 -6.76 16 17 C 0.60 6.79 7.68 -12.47 -0.10 6.70 16 18 O -0.51 -7.06 16.35 5.30 0.09 -6.98 16 19 C -0.06 -0.61 6.96 -36.33 -0.25 -0.86 16 20 C -0.14 -1.18 10.97 -38.91 -0.43 -1.61 16 21 C 0.05 0.49 7.97 -17.03 -0.14 0.36 16 22 Cl 0.03 0.24 29.33 -51.86 -1.52 -1.28 16 23 N -0.33 -3.40 12.05 32.82 0.40 -3.01 16 24 O 0.14 1.30 7.81 15.52 0.12 1.43 16 25 C 0.11 1.27 6.11 -3.62 -0.02 1.25 16 26 C -0.11 -1.52 4.87 -27.01 -0.13 -1.65 16 27 H 0.26 8.06 8.73 -40.82 -0.36 7.70 16 28 H 0.05 0.99 6.51 -51.93 -0.34 0.65 16 29 H 0.03 0.54 4.28 -51.93 -0.22 0.32 16 30 H 0.07 0.86 6.17 -51.93 -0.32 0.54 16 31 H 0.07 0.90 7.98 -51.93 -0.41 0.48 16 32 H 0.02 0.42 8.00 -51.93 -0.42 0.01 16 33 H 0.04 0.83 8.03 -51.92 -0.42 0.41 16 34 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.10 0.81 3.85 -54.40 -0.21 0.60 16 37 H 0.08 0.68 7.62 -51.93 -0.40 0.28 16 38 H 0.19 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.10 1.13 7.03 -51.93 -0.36 0.77 16 40 H 0.08 0.84 6.55 -51.93 -0.34 0.50 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.09 1.47 7.82 -51.93 -0.41 1.06 16 LS Contribution 339.75 15.07 5.12 5.12 Total: -1.00 -32.23 339.75 -7.23 -39.46 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -5.22 Total: -2.82 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -1.71 Total: -4.42 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.07 Total: -52.71 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: 0.21 Total: -5.55 kcal Atomic # 14 Polarization: 26.37 SS G_CDS: -4.18 Total: 22.19 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.52 Total: -1.28 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.23 -7.23 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035249115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.409 kcal (2) G-P(sol) polarization free energy of solvation -32.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.40 seconds