Wall clock time and date at job start Tue Mar 31 2020 22:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86802 * 119.99868 * 2 1 4 4 H 1.48503 * 109.46966 * 5.84863 * 3 2 1 5 5 H 1.48503 * 109.47194 * 125.84411 * 3 2 1 6 6 H 1.48499 * 109.47542 * 245.84228 * 3 2 1 7 7 C 1.38809 * 120.00513 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99536 * 339.08094 * 7 2 1 9 9 N 1.36933 * 120.00474 * 159.07876 * 7 2 1 10 10 C 1.47085 * 125.62804 * 356.00221 * 9 7 2 11 11 C 1.54454 * 107.29686 * 180.96671 * 10 9 7 12 12 C 1.54388 * 102.86973 * 21.51110 * 11 10 9 13 13 C 1.47575 * 125.63086 * 175.70023 * 9 7 2 14 14 C 1.52109 * 110.50785 * 207.35557 * 12 11 10 15 15 C 1.53337 * 109.44494 * 295.90237 * 14 12 11 16 16 N 1.46930 * 108.68971 * 306.70857 * 15 14 12 17 17 C 1.34784 * 120.55139 * 234.36427 * 16 15 14 18 18 O 1.21575 * 120.00115 * 185.58857 * 17 16 15 19 19 C 1.47523 * 119.99976 * 5.59377 * 17 16 15 20 20 C 1.36777 * 126.93134 * 187.54189 * 19 17 16 21 21 C 1.41405 * 103.84031 * 179.97438 * 20 19 17 22 22 Cl 1.73604 * 126.72499 * 180.02562 * 21 20 19 23 23 N 1.30221 * 106.54897 * 359.97438 * 21 20 19 24 24 O 1.20878 * 111.96304 * 359.69994 * 23 21 20 25 25 C 1.46937 * 118.89877 * 54.34190 * 16 15 14 26 26 C 1.52105 * 110.51286 * 83.32681 * 12 11 10 27 27 H 0.97000 * 119.99697 * 185.01149 * 1 2 3 28 28 H 1.08996 * 109.87658 * 300.39480 * 10 9 7 29 29 H 1.09000 * 109.87313 * 61.54399 * 10 9 7 30 30 H 1.09001 * 110.73154 * 139.85158 * 11 10 9 31 31 H 1.08999 * 110.73703 * 263.16637 * 11 10 9 32 32 H 1.08998 * 110.37749 * 275.52638 * 13 9 7 33 33 H 1.09007 * 110.37484 * 37.87196 * 13 9 7 34 34 H 1.08999 * 109.47568 * 55.89902 * 14 12 11 35 35 H 1.08999 * 109.47363 * 175.91189 * 14 12 11 36 36 H 1.08997 * 109.60502 * 186.94412 * 15 14 12 37 37 H 1.08999 * 109.60090 * 66.46526 * 15 14 12 38 38 H 1.08001 * 128.08259 * 0.03422 * 20 19 17 39 39 H 1.09003 * 109.60260 * 185.89314 * 25 16 15 40 40 H 1.09001 * 109.60081 * 65.41011 * 25 16 15 41 41 H 1.09000 * 109.47915 * 184.07735 * 26 12 11 42 42 H 1.09001 * 109.47479 * 304.09970 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2914 2.7428 0.1427 5 1 3.2077 1.6366 1.1349 6 1 2.9939 1.7601 -1.2774 7 6 2.0103 -1.2021 -0.0005 8 1 1.5237 -2.1067 0.3330 9 7 3.3120 -1.2410 -0.4240 10 6 4.0666 -0.1071 -0.9793 11 6 5.4767 -0.6253 -1.3375 12 6 5.2598 -2.1481 -1.4712 13 6 4.1911 -2.4258 -0.3928 14 6 6.5448 -2.8990 -1.1570 15 6 7.6126 -2.5413 -2.1977 16 7 7.0602 -2.7760 -3.5388 17 6 7.7058 -3.5695 -4.4165 18 8 7.2948 -3.6764 -5.5557 19 6 8.9110 -4.3083 -3.9947 20 6 9.7526 -5.0324 -4.7936 21 6 10.7294 -5.5248 -3.8974 22 17 12.0917 -6.5250 -4.2939 23 7 10.4073 -5.0799 -2.7167 24 8 9.4085 -4.3997 -2.7468 25 6 5.7920 -2.1318 -3.9072 26 6 4.7347 -2.4921 -2.8566 27 1 -0.4850 -0.8369 0.0734 28 1 3.5699 0.2655 -1.8751 29 1 4.1413 0.6874 -0.2368 30 1 5.8159 -0.1996 -2.2819 31 1 6.1837 -0.4050 -0.5377 32 1 4.6556 -2.5281 0.5880 33 1 3.6262 -3.3243 -0.6416 34 1 6.8964 -2.6181 -0.1642 35 1 6.3548 -3.9719 -1.1853 36 1 8.4920 -3.1679 -2.0497 37 1 7.8871 -1.4915 -2.0940 38 1 9.6871 -5.1903 -5.8600 39 1 5.4713 -2.4886 -4.8860 40 1 5.9258 -1.0504 -3.9354 41 1 4.5192 -3.5593 -2.9090 42 1 3.8228 -1.9272 -3.0502 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035249115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:32 Heat of formation + Delta-G solvation = 56.254172 kcal Electronic energy + Delta-G solvation = -27790.547192 eV Core-core repulsion = 23800.952840 eV Total energy + Delta-G solvation = -3989.594352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.42414 -41.70765 -40.16239 -38.27285 -37.54913 -35.18242 -34.82461 -33.70526 -32.92558 -32.00576 -30.60181 -28.81871 -26.13545 -25.32184 -24.85948 -24.17597 -23.80263 -22.32871 -21.87244 -20.11335 -19.47641 -19.23476 -18.46285 -17.87304 -17.37400 -16.97505 -16.74737 -16.35592 -16.14090 -15.50015 -15.30029 -15.15074 -15.01732 -14.79640 -14.65355 -14.34520 -13.94343 -13.83668 -13.64580 -13.50853 -13.11715 -12.99900 -12.87515 -12.54574 -12.24606 -12.18071 -11.88055 -11.77499 -11.62589 -11.55997 -11.40532 -11.26913 -11.19058 -11.04520 -10.81371 -10.55051 -9.80418 -9.07702 -8.61414 -5.38822 -0.52030 0.26224 0.59251 1.20264 1.42483 1.53468 1.72250 1.74335 1.91185 2.57335 2.91519 3.12271 3.29760 3.39742 3.47641 3.56486 3.74641 3.76412 3.81895 4.05767 4.16006 4.27155 4.33402 4.47380 4.52654 4.59533 4.62493 4.69822 4.77684 4.82638 4.91241 4.93012 5.05812 5.09514 5.11677 5.27225 5.32660 5.43219 5.51402 5.60624 6.04743 6.13172 6.56139 6.78393 6.87862 7.52231 8.16042 8.90441 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.031676 B = 0.002490 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.738765 B =11244.002601 C =11474.294104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.087 4.087 3 Si 1.109 2.891 4 H -0.317 1.317 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.310 4.310 8 H 0.041 0.959 9 N -0.632 5.632 10 C 0.101 3.899 11 C -0.111 4.111 12 C -0.059 4.059 13 C 0.141 3.859 14 C -0.110 4.110 15 C 0.098 3.902 16 N -0.587 5.587 17 C 0.605 3.395 18 O -0.541 6.541 19 C -0.070 4.070 20 C -0.127 4.127 21 C 0.050 3.950 22 Cl 0.044 6.956 23 N -0.344 5.344 24 O 0.140 5.860 25 C 0.121 3.879 26 C -0.108 4.108 27 H 0.244 0.756 28 H 0.033 0.967 29 H 0.021 0.979 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.031 0.969 33 H 0.026 0.974 34 H 0.100 0.900 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.104 0.896 38 H 0.212 0.788 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.059 0.941 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.759 -8.689 -9.981 30.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.279 4.279 3 Si 0.937 3.063 4 H -0.247 1.247 5 H -0.214 1.214 6 H -0.166 1.166 7 C -0.439 4.439 8 H 0.059 0.941 9 N -0.359 5.359 10 C -0.023 4.023 11 C -0.149 4.149 12 C -0.060 4.060 13 C 0.016 3.984 14 C -0.148 4.148 15 C -0.024 4.024 16 N -0.318 5.318 17 C 0.391 3.609 18 O -0.419 6.419 19 C -0.136 4.136 20 C -0.149 4.149 21 C -0.133 4.133 22 Cl 0.072 6.928 23 N -0.047 5.047 24 O 0.066 5.934 25 C 0.000 4.000 26 C -0.147 4.147 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.118 0.882 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.229 0.771 39 H 0.108 0.892 40 H 0.114 0.886 41 H 0.077 0.923 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 27.953 -7.378 -9.465 30.420 hybrid contribution -0.991 -2.238 -0.108 2.450 sum 26.961 -9.615 -9.573 30.183 Atomic orbital electron populations 1.71048 1.07062 1.28738 1.54161 1.27100 0.96399 1.04629 0.99766 0.83431 0.72609 0.71502 0.78760 1.24700 1.21417 1.16560 1.19984 0.87554 0.95097 1.41239 0.94122 1.44946 1.09294 1.07907 1.73768 1.22152 0.93724 0.90731 0.95684 1.22713 0.94482 0.94244 1.03419 1.21023 0.94931 0.95821 0.94257 1.21743 0.90898 0.89250 0.96530 1.21695 0.92736 1.00420 0.99973 1.22461 0.96565 1.04267 0.79103 1.48116 1.23051 1.45753 1.14911 1.16649 0.80689 0.78795 0.84788 1.90875 1.66112 1.65602 1.19291 1.24033 0.99484 1.04989 0.85056 1.23008 0.91488 0.97037 1.03407 1.24199 0.96544 1.02188 0.90391 1.98442 1.37717 1.64466 1.92181 1.73828 1.01096 1.07821 1.21991 1.85181 1.29486 1.50336 1.28411 1.21789 0.81164 0.98494 0.98594 1.21569 0.98003 1.01385 0.93703 0.94650 0.94934 0.96200 0.88231 0.88839 0.95129 0.95545 0.88209 0.91303 0.87368 0.87757 0.77121 0.89188 0.88647 0.92257 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.91 13.70 21.65 0.30 -62.61 16 2 C -0.09 -5.19 5.49 84.86 0.47 -4.73 16 3 Si 1.11 53.18 24.57 68.60 1.69 54.86 16 4 H -0.32 -15.90 7.11 99.48 0.71 -15.19 16 5 H -0.29 -12.94 6.94 99.48 0.69 -12.25 16 6 H -0.24 -9.89 5.24 99.48 0.52 -9.37 16 7 C -0.31 -17.95 10.52 84.03 0.88 -17.07 16 8 H 0.04 2.58 8.06 -2.91 -0.02 2.55 16 9 N -0.63 -29.30 3.34 -692.31 -2.31 -31.61 16 10 C 0.10 3.88 4.20 86.76 0.36 4.25 16 11 C -0.11 -2.76 4.92 31.56 0.16 -2.61 16 12 C -0.06 -1.49 0.55 -51.84 -0.03 -1.52 16 13 C 0.14 5.09 6.16 86.63 0.53 5.62 16 14 C -0.11 -1.91 4.84 30.41 0.15 -1.77 16 15 C 0.10 1.35 6.07 86.41 0.52 1.87 16 16 N -0.59 -10.50 2.96 -822.07 -2.43 -12.93 16 17 C 0.61 12.09 7.68 86.69 0.67 12.75 16 18 O -0.54 -13.91 16.35 -3.95 -0.06 -13.98 16 19 C -0.07 -1.17 6.96 24.38 0.17 -1.00 16 20 C -0.13 -1.83 10.97 22.71 0.25 -1.59 16 21 C 0.05 0.78 7.97 85.71 0.68 1.47 16 22 Cl 0.04 0.57 29.33 -2.72 -0.08 0.49 16 23 N -0.34 -6.18 12.05 -51.04 -0.61 -6.80 16 24 O 0.14 2.26 7.81 65.72 0.51 2.78 16 25 C 0.12 2.43 6.11 86.41 0.53 2.96 16 26 C -0.11 -2.77 4.87 30.41 0.15 -2.62 16 27 H 0.24 16.06 8.73 -92.71 -0.81 15.25 16 28 H 0.03 1.34 6.51 -2.39 -0.02 1.32 16 29 H 0.02 0.82 4.28 -2.39 -0.01 0.81 16 30 H 0.10 1.93 6.17 -2.39 -0.01 1.92 16 31 H 0.09 1.93 7.98 -2.39 -0.02 1.91 16 32 H 0.03 1.08 8.00 -2.39 -0.02 1.06 16 33 H 0.03 1.02 8.03 -2.38 -0.02 1.01 16 34 H 0.10 1.49 8.09 -2.39 -0.02 1.47 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.11 1.34 3.85 -41.44 -0.16 1.18 16 37 H 0.10 1.08 7.62 -2.39 -0.02 1.06 16 38 H 0.21 2.19 8.06 -2.91 -0.02 2.16 16 39 H 0.09 1.97 7.03 -2.39 -0.02 1.95 16 40 H 0.10 1.64 6.55 -2.39 -0.02 1.62 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.06 1.99 7.82 -2.39 -0.02 1.97 16 Total: -1.00 -73.72 339.75 3.16 -70.57 By element: Atomic # 1 Polarization: 2.53 SS G_CDS: 0.68 Total: 3.21 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 5.49 Total: -3.98 kcal Atomic # 7 Polarization: -108.89 SS G_CDS: -5.07 Total: -113.95 kcal Atomic # 8 Polarization: -11.65 SS G_CDS: 0.45 Total: -11.20 kcal Atomic # 14 Polarization: 53.18 SS G_CDS: 1.69 Total: 54.86 kcal Atomic # 17 Polarization: 0.57 SS G_CDS: -0.08 Total: 0.49 kcal Total: -73.72 3.16 -70.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035249115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.820 kcal (2) G-P(sol) polarization free energy of solvation -73.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds