Wall clock time and date at job start Tue Mar 31 2020 22:40:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00161 * 2 1 4 4 H 1.48500 * 109.47322 * 89.99579 * 3 2 1 5 5 H 1.48496 * 109.47373 * 209.99711 * 3 2 1 6 6 H 1.48505 * 109.47093 * 329.99785 * 3 2 1 7 7 C 1.38816 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99741 * 180.02562 * 7 2 1 9 9 N 1.36929 * 119.99847 * 0.02562 * 7 2 1 10 10 C 1.46751 * 119.99995 * 179.97438 * 9 7 2 11 11 C 1.52960 * 109.20690 * 155.00205 * 10 9 7 12 12 C 1.53284 * 109.72592 * 178.69243 * 11 10 9 13 13 H 1.09262 * 110.55533 * 118.85652 * 12 11 10 14 14 C 1.53322 * 109.12822 * 240.61550 * 12 11 10 15 15 C 1.52674 * 110.01879 * 61.39736 * 14 12 11 16 16 C 1.52769 * 110.81911 * 57.87941 * 15 14 12 17 17 C 1.53397 * 109.87981 * 302.27370 * 16 15 14 18 18 H 1.09202 * 110.63402 * 176.62236 * 17 16 15 19 19 C 1.52893 * 109.21211 * 275.70162 * 10 9 7 20 20 N 1.47495 * 107.77122 * 55.81679 * 17 16 15 21 21 C 1.34620 * 122.00825 * 120.05706 * 20 17 16 22 22 O 1.21579 * 119.99848 * 174.70990 * 21 20 17 23 23 C 1.47511 * 119.99894 * 354.70938 * 21 20 17 24 24 C 1.36789 * 126.92740 * 184.75994 * 23 21 20 25 25 C 1.41410 * 103.83687 * 179.87481 * 24 23 21 26 26 Cl 1.73597 * 126.72308 * 180.11461 * 25 24 23 27 27 N 1.30227 * 106.55132 * 0.38724 * 25 24 23 28 28 O 1.20886 * 111.95915 * 359.75196 * 27 25 24 29 29 H 0.96997 * 119.99984 * 180.02562 * 1 2 3 30 30 H 0.97006 * 120.00055 * 0.02562 * 9 7 2 31 31 H 1.09078 * 108.94304 * 35.36403 * 10 9 7 32 32 H 1.09305 * 109.29754 * 298.53221 * 11 10 9 33 33 H 1.08911 * 109.65045 * 58.00831 * 11 10 9 34 34 H 1.09178 * 109.44836 * 181.74073 * 14 12 11 35 35 H 1.09107 * 109.32513 * 301.12679 * 14 12 11 36 36 H 1.08921 * 109.80205 * 296.51208 * 15 14 12 37 37 H 1.09549 * 109.03827 * 177.76165 * 15 14 12 38 38 H 1.09119 * 109.64283 * 182.11585 * 16 15 14 39 39 H 1.09188 * 109.48637 * 62.26296 * 16 15 14 40 40 H 1.09039 * 109.77103 * 301.85749 * 19 10 9 41 41 H 1.09273 * 109.21057 * 61.30344 * 19 10 9 42 42 H 1.07997 * 128.07886 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4402 -0.6999 6 1 1.4477 2.6527 -0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0593 -3.6589 0.0005 11 6 1.1772 -4.7493 0.6109 12 6 1.9203 -6.0897 0.5870 13 1 2.0608 -6.4686 1.6022 14 6 1.1220 -7.0918 -0.2552 15 6 1.0002 -6.5876 -1.6911 16 6 2.3803 -6.3627 -2.3065 17 6 3.1747 -5.3643 -1.4550 18 1 4.1850 -5.2397 -1.8504 19 6 2.4351 -4.0229 -1.4361 20 7 3.2225 -5.8865 -0.0764 21 6 4.3858 -6.1671 0.5404 22 8 4.3885 -6.5042 1.7085 23 6 5.6570 -6.0655 -0.2010 24 6 6.9026 -6.4013 0.2536 25 6 7.7506 -6.1155 -0.8413 26 17 9.4722 -6.3294 -0.9044 27 7 6.9879 -5.6549 -1.7910 28 8 5.8259 -5.6181 -1.4597 29 1 -0.4850 -0.8400 0.0004 30 1 0.3555 -2.3880 -0.0002 31 1 2.9650 -3.5449 0.5977 32 1 0.9406 -4.4857 1.6450 33 1 0.2507 -4.8307 0.0442 34 1 1.6311 -8.0576 -0.2503 35 1 0.1262 -7.2118 0.1742 36 1 0.4340 -5.6573 -1.7087 37 1 0.4626 -7.3331 -2.2872 38 1 2.2710 -5.9675 -3.3178 39 1 2.9200 -7.3109 -2.3468 40 1 1.5343 -4.0926 -2.0466 41 1 3.0836 -3.2449 -1.8463 42 1 7.1746 -6.7946 1.2219 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039305934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:09 Heat of formation + Delta-G solvation = 33.340660 kcal Electronic energy + Delta-G solvation = -28471.187660 eV Core-core repulsion = 24480.599704 eV Total energy + Delta-G solvation = -3990.587956 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.44974 -42.14017 -39.59759 -38.31253 -36.98638 -35.12312 -34.49732 -34.12090 -33.63567 -32.86893 -30.53733 -27.08266 -26.80856 -25.49393 -25.02870 -24.59451 -23.13513 -22.44127 -21.87338 -20.18989 -19.50003 -19.23238 -18.36978 -17.90020 -17.38117 -16.99853 -16.29689 -16.22473 -15.97823 -15.72081 -15.30533 -15.27443 -15.10773 -14.76424 -14.57784 -14.21925 -13.95355 -13.92468 -13.61940 -13.57115 -12.92293 -12.70811 -12.64330 -12.33776 -12.28138 -12.03810 -11.94466 -11.91488 -11.76671 -11.67572 -11.40890 -11.30911 -11.17936 -11.11111 -11.09234 -10.92354 -9.78725 -9.11806 -8.38958 -5.32604 -0.56993 0.19900 0.55187 1.16340 1.56063 1.65579 1.69107 1.80020 1.82063 2.68156 2.84779 3.21321 3.38415 3.42590 3.51860 3.69954 3.73482 3.84242 3.93452 3.99197 4.03972 4.18593 4.27324 4.35107 4.46833 4.51952 4.55786 4.64219 4.82582 4.90499 4.93373 4.96476 5.06418 5.12453 5.19881 5.31199 5.39999 5.44421 5.52627 5.58525 6.09406 6.50166 6.51264 6.73956 7.09829 7.99857 8.10896 9.13375 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.010059 B = 0.004022 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2783.000513 B = 6960.824236 C = 8767.131520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.098 4.098 3 Si 1.123 2.877 4 H -0.287 1.287 5 H -0.277 1.277 6 H -0.290 1.290 7 C -0.327 4.327 8 H 0.056 0.944 9 N -0.747 5.747 10 C 0.192 3.808 11 C -0.127 4.127 12 C 0.149 3.851 13 H 0.102 0.898 14 C -0.117 4.117 15 C -0.122 4.122 16 C -0.119 4.119 17 C 0.130 3.870 18 H 0.108 0.892 19 C -0.133 4.133 20 N -0.580 5.580 21 C 0.605 3.395 22 O -0.541 6.541 23 C -0.073 4.073 24 C -0.127 4.127 25 C 0.054 3.946 26 Cl 0.049 6.951 27 N -0.345 5.345 28 O 0.130 5.870 29 H 0.246 0.754 30 H 0.361 0.639 31 H 0.017 0.983 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.044 0.956 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.735 -20.445 -3.916 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.290 4.290 3 Si 0.949 3.051 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.458 4.458 8 H 0.074 0.926 9 N -0.389 5.389 10 C 0.083 3.917 11 C -0.166 4.166 12 C 0.046 3.954 13 H 0.120 0.880 14 C -0.155 4.155 15 C -0.159 4.159 16 C -0.157 4.157 17 C 0.027 3.973 18 H 0.125 0.875 19 C -0.174 4.174 20 N -0.311 5.311 21 C 0.390 3.610 22 O -0.419 6.419 23 C -0.138 4.138 24 C -0.149 4.149 25 C -0.130 4.130 26 Cl 0.077 6.923 27 N -0.050 5.050 28 O 0.058 5.942 29 H 0.057 0.943 30 H 0.194 0.806 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.062 0.938 42 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 11.236 -18.566 -4.522 22.167 hybrid contribution 0.181 -1.382 0.811 1.613 sum 11.417 -19.948 -3.711 23.282 Atomic orbital electron populations 1.70952 1.06979 1.28032 1.56230 1.26996 0.97126 1.04193 1.00711 0.82669 0.73573 0.72132 0.76758 1.21418 1.20287 1.21616 1.20276 0.91835 0.87202 1.46524 0.92587 1.42661 1.04619 1.01563 1.90070 1.20024 0.93317 0.84544 0.93791 1.22234 0.99393 0.93682 1.01312 1.21719 0.80633 0.95140 0.97865 0.88041 1.21909 1.00802 0.97530 0.95273 1.21481 0.96641 1.02207 0.95604 1.21953 0.96130 0.98647 0.98953 1.22208 1.01214 0.93525 0.80370 0.87470 1.22521 1.00550 0.95060 0.99255 1.48481 1.05352 1.61154 1.16065 1.16538 0.81182 0.78226 0.85010 1.90847 1.85755 1.50282 1.15059 1.24155 0.97608 1.05355 0.86680 1.23019 0.88398 1.01885 1.01640 1.24212 0.91587 1.04786 0.92375 1.98432 1.00393 1.95288 1.98182 1.73833 0.90561 1.17138 1.23439 1.85178 1.20025 1.61868 1.27137 0.94304 0.80618 0.96479 0.92550 0.89566 0.90449 0.88783 0.92095 0.89434 0.89201 0.90352 0.90470 0.93750 0.76816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.39 13.70 21.65 0.30 -60.10 16 2 C -0.10 -5.72 5.50 84.86 0.47 -5.25 16 3 Si 1.12 52.71 29.92 68.60 2.05 54.76 16 4 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.33 -18.43 9.91 84.04 0.83 -17.59 16 8 H 0.06 3.18 7.83 -2.91 -0.02 3.15 16 9 N -0.75 -36.94 5.11 -322.58 -1.65 -38.59 16 10 C 0.19 7.44 2.51 44.89 0.11 7.56 16 11 C -0.13 -3.88 4.92 30.68 0.15 -3.73 16 12 C 0.15 3.66 3.46 44.99 0.16 3.82 16 13 H 0.10 2.61 7.21 -2.25 -0.02 2.59 16 14 C -0.12 -2.04 5.37 30.59 0.16 -1.88 16 15 C -0.12 -2.09 5.34 30.41 0.16 -1.93 16 16 C -0.12 -2.15 5.38 30.65 0.16 -1.99 16 17 C 0.13 3.22 3.36 45.00 0.15 3.37 16 18 H 0.11 2.65 4.13 -22.85 -0.09 2.56 16 19 C -0.13 -4.35 5.02 30.62 0.15 -4.20 16 20 N -0.58 -15.13 1.79 -770.38 -1.38 -16.51 16 21 C 0.61 16.94 7.73 86.71 0.67 17.61 16 22 O -0.54 -17.49 16.49 -3.96 -0.07 -17.55 16 23 C -0.07 -1.80 7.02 24.38 0.17 -1.63 16 24 C -0.13 -2.65 10.96 22.71 0.25 -2.40 16 25 C 0.05 1.17 7.97 85.71 0.68 1.85 16 26 Cl 0.05 0.86 29.33 -2.72 -0.08 0.78 16 27 N -0.35 -8.69 12.05 -51.03 -0.61 -9.31 16 28 O 0.13 3.26 7.83 65.76 0.52 3.78 16 29 H 0.25 15.09 6.77 -92.71 -0.63 14.46 16 30 H 0.36 18.40 6.62 -92.70 -0.61 17.79 16 31 H 0.02 0.76 7.81 -2.35 -0.02 0.74 16 32 H 0.06 1.86 8.17 -2.23 -0.02 1.85 16 33 H 0.09 2.40 6.38 -2.43 -0.02 2.39 16 34 H 0.08 1.21 8.16 -2.29 -0.02 1.19 16 35 H 0.09 1.38 8.15 -2.33 -0.02 1.36 16 36 H 0.06 1.25 5.27 -2.43 -0.01 1.24 16 37 H 0.09 1.14 8.19 -2.09 -0.02 1.12 16 38 H 0.09 1.47 8.15 -2.32 -0.02 1.45 16 39 H 0.08 1.23 8.16 -2.29 -0.02 1.21 16 40 H 0.08 2.43 6.36 -2.37 -0.02 2.41 16 41 H 0.04 1.66 8.16 -2.24 -0.02 1.65 16 42 H 0.21 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -69.04 345.57 3.90 -65.14 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.53 Total: 23.98 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 4.29 Total: -6.39 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -3.35 Total: -124.50 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: 0.45 Total: -13.77 kcal Atomic # 14 Polarization: 52.71 SS G_CDS: 2.05 Total: 54.76 kcal Atomic # 17 Polarization: 0.86 SS G_CDS: -0.08 Total: 0.78 kcal Total: -69.04 3.90 -65.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039305934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.484 kcal (2) G-P(sol) polarization free energy of solvation -69.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds