Wall clock time and date at job start Tue Mar 31 2020 22:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00358 * 2 1 4 4 H 1.48495 * 109.47688 * 239.99520 * 3 2 1 5 5 H 1.48503 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47232 * 119.99592 * 3 2 1 7 7 C 1.38814 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 163.21768 * 7 2 1 9 9 N 1.36933 * 120.00011 * 342.95335 * 7 2 1 10 10 C 1.46932 * 120.68725 * 152.49348 * 9 7 2 11 11 C 1.53185 * 108.88997 * 125.95912 * 10 9 7 12 12 C 1.53127 * 109.29803 * 55.07135 * 11 10 9 13 13 C 1.52496 * 109.61654 * 299.51111 * 12 11 10 14 14 C 1.54187 * 110.02326 * 298.38093 * 13 12 11 15 15 C 1.55042 * 102.72313 * 219.28792 * 14 13 12 16 16 N 1.48150 * 103.31006 * 37.01704 * 15 14 13 17 17 C 1.34786 * 127.02079 * 141.00885 * 16 15 14 18 18 O 1.21574 * 119.99878 * 179.97438 * 17 16 15 19 19 C 1.47512 * 119.99725 * 359.97438 * 17 16 15 20 20 C 1.36790 * 126.92812 * 179.70884 * 19 17 16 21 21 C 1.41411 * 103.83649 * 179.87495 * 20 19 17 22 22 Cl 1.73605 * 126.72295 * 180.13367 * 21 20 19 23 23 N 1.30222 * 106.55175 * 0.39266 * 21 20 19 24 24 O 1.20878 * 111.96060 * 359.74706 * 23 21 20 25 25 C 1.47615 * 105.96088 * 320.98921 * 16 15 14 26 26 C 1.47036 * 120.68202 * 332.20857 * 9 7 2 27 27 H 0.97000 * 119.99492 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.56989 * 245.77753 * 10 9 7 29 29 H 1.08994 * 109.56695 * 6.13653 * 10 9 7 30 30 H 1.08990 * 109.50519 * 175.02395 * 11 10 9 31 31 H 1.09004 * 109.49834 * 295.13189 * 11 10 9 32 32 H 1.08997 * 109.44527 * 59.55076 * 12 11 10 33 33 H 1.09001 * 109.44797 * 179.49730 * 12 11 10 34 34 H 1.09006 * 110.75817 * 337.59634 * 14 13 12 35 35 H 1.09005 * 110.75976 * 100.97505 * 14 13 12 36 36 H 1.09002 * 110.64553 * 278.56056 * 15 14 13 37 37 H 1.08997 * 110.78897 * 155.54585 * 15 14 13 38 38 H 1.07999 * 128.07933 * 359.97438 * 20 19 17 39 39 H 1.09003 * 109.97210 * 265.95859 * 25 16 15 40 40 H 1.08993 * 109.97609 * 144.68415 * 25 16 15 41 41 H 1.08993 * 109.58482 * 352.60016 * 26 9 7 42 42 H 1.09000 * 109.57844 * 113.00891 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0557 -1.2222 -0.2695 9 7 1.3707 -2.3618 0.3487 10 6 1.8215 -3.6554 -0.1826 11 6 2.0795 -4.6095 0.9878 12 6 0.8197 -4.7009 1.8534 13 6 0.4743 -3.3206 2.4021 14 6 1.6219 -2.8042 3.2930 15 6 0.8661 -2.1114 4.4560 16 7 -0.3114 -2.9856 4.6662 17 6 -0.8661 -3.3303 5.8452 18 8 -1.8379 -4.0604 5.8694 19 6 -0.2940 -2.8218 7.1062 20 6 -0.7430 -3.0746 8.3733 21 6 0.1528 -2.3566 9.1990 22 17 0.1248 -2.2710 10.9328 23 7 0.9994 -1.7677 8.4039 24 8 0.7720 -2.0103 7.2418 25 6 -0.7535 -3.4015 3.3206 26 6 0.2224 -2.3388 1.2668 27 1 -0.4849 0.8401 -0.0004 28 1 1.0506 -4.0727 -0.8305 29 1 2.7417 -3.5164 -0.7499 30 1 2.3292 -5.5982 0.6031 31 1 2.9072 -4.2326 1.5887 32 1 -0.0095 -5.0692 1.2495 33 1 0.9977 -5.3862 2.6822 34 1 2.2258 -3.6325 3.6637 35 1 2.2387 -2.0870 2.7514 36 1 0.5534 -1.1079 4.1674 37 1 1.4844 -2.0770 5.3530 38 1 -1.5840 -3.6821 8.6731 39 1 -1.5327 -2.7297 2.9605 40 1 -1.1285 -4.4244 3.3515 41 1 0.1003 -1.3352 1.6740 42 1 -0.6805 -2.6298 0.7299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001040502543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:28 Heat of formation + Delta-G solvation = 55.957003 kcal Electronic energy + Delta-G solvation = -27962.775200 eV Core-core repulsion = 23973.167962 eV Total energy + Delta-G solvation = -3989.607238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -45.48918 -40.27604 -38.58146 -37.50296 -35.97089 -34.07170 -33.25824 -32.50587 -31.20051 -30.04177 -29.28181 -26.37037 -25.40575 -24.02676 -23.85466 -22.70730 -22.25349 -21.04861 -20.25325 -18.55189 -18.27737 -17.63818 -16.73494 -16.56460 -16.15167 -15.76857 -15.11020 -14.80630 -14.33016 -14.19707 -14.01375 -13.75331 -13.52416 -13.12409 -13.09114 -12.89418 -12.76569 -12.45852 -12.25755 -11.97104 -11.76237 -11.44761 -11.17278 -11.06516 -10.99020 -10.71806 -10.48806 -10.43758 -10.41417 -10.19987 -10.14884 -10.09096 -9.86916 -9.64277 -9.45620 -8.70908 -8.53030 -6.73259 -5.85572 -3.27405 0.42385 1.05277 1.44819 2.22278 2.80347 2.93421 3.34283 3.41204 3.41929 3.83482 4.33516 4.38873 4.44156 4.63402 4.90058 4.95027 5.17268 5.29161 5.34469 5.46173 5.55650 5.60009 5.67739 5.77229 5.92348 5.93729 6.02914 6.17123 6.18543 6.25647 6.40235 6.45497 6.57956 6.72531 6.79667 6.85841 6.95986 7.23628 7.31796 7.47745 7.53695 7.73958 7.83397 8.37808 9.14616 9.77989 10.35256 11.23017 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.003164 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.017640 B = 8847.743703 C = 9945.350200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.005 3.995 3 Si 0.899 3.101 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.283 1.283 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.588 5.588 10 C 0.144 3.856 11 C -0.134 4.134 12 C -0.094 4.094 13 C -0.094 4.094 14 C -0.112 4.112 15 C 0.089 3.911 16 N -0.597 5.597 17 C 0.615 3.385 18 O -0.517 6.517 19 C -0.054 4.054 20 C -0.143 4.143 21 C 0.052 3.948 22 Cl 0.030 6.970 23 N -0.330 5.330 24 O 0.139 5.861 25 C 0.119 3.881 26 C 0.187 3.813 27 H 0.255 0.745 28 H 0.017 0.983 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.104 0.896 36 H 0.086 0.914 37 H 0.083 0.917 38 H 0.194 0.806 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.091 0.909 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 -7.200 15.047 16.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.194 4.194 3 Si 0.728 3.272 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.310 5.310 10 C 0.017 3.983 11 C -0.173 4.173 12 C -0.132 4.132 13 C -0.097 4.097 14 C -0.150 4.150 15 C -0.033 4.033 16 N -0.329 5.329 17 C 0.400 3.600 18 O -0.395 6.395 19 C -0.120 4.120 20 C -0.167 4.167 21 C -0.131 4.131 22 Cl 0.058 6.942 23 N -0.031 5.031 24 O 0.063 5.937 25 C -0.003 4.003 26 C 0.061 3.939 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.122 0.878 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.211 0.789 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 0.422 -6.641 15.479 16.848 hybrid contribution -0.218 0.501 0.413 0.685 sum 0.203 -6.139 15.892 17.037 Atomic orbital electron populations 1.70010 1.05203 1.25683 1.53644 1.25011 0.95232 0.98301 1.00813 0.86434 0.78996 0.83517 0.78226 1.20923 1.21666 1.20915 1.19107 0.92536 0.84682 1.41916 0.91698 1.43987 1.35503 1.01463 1.50071 1.20920 0.97521 0.86913 0.92906 1.22034 0.97385 0.98984 0.98922 1.21384 0.98325 0.95052 0.98446 1.21817 0.92905 0.98114 0.96865 1.22703 0.97296 1.00506 0.94490 1.23004 0.85858 0.94620 0.99770 1.48827 1.31163 1.47388 1.05507 1.15978 0.83067 0.81075 0.79923 1.90878 1.25946 1.37277 1.85353 1.24283 0.91883 0.98470 0.97334 1.22702 1.02131 1.02576 0.89244 1.24033 0.96874 1.01844 0.90386 1.98422 1.97809 1.97369 1.00608 1.73871 1.20912 1.18632 0.89644 1.85191 1.38653 1.49681 1.20160 1.22279 0.97940 1.00954 0.79141 1.20656 0.88950 0.97197 0.87125 0.93527 0.96497 0.92900 0.93175 0.92163 0.92437 0.93461 0.91920 0.87783 0.89563 0.89929 0.78884 0.90341 0.90504 0.89137 0.96166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.42 11.20 55.49 0.62 -23.80 16 2 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 3 Si 0.90 20.48 29.59 -169.99 -5.03 15.45 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.35 9.58 -15.06 -0.14 -6.50 16 8 H 0.07 1.62 7.88 -52.49 -0.41 1.21 16 9 N -0.59 -13.23 2.52 -172.84 -0.43 -13.66 16 10 C 0.14 2.76 6.50 -3.71 -0.02 2.73 16 11 C -0.13 -2.10 5.89 -26.57 -0.16 -2.25 16 12 C -0.09 -1.43 4.34 -26.92 -0.12 -1.54 16 13 C -0.09 -1.54 0.63 -154.28 -0.10 -1.64 16 14 C -0.11 -1.71 4.99 -25.03 -0.12 -1.83 16 15 C 0.09 1.25 6.75 -2.06 -0.01 1.23 16 16 N -0.60 -8.66 3.30 -171.09 -0.56 -9.22 16 17 C 0.61 8.91 7.89 -12.48 -0.10 8.81 16 18 O -0.52 -8.63 17.26 5.30 0.09 -8.54 16 19 C -0.05 -0.68 7.10 -36.33 -0.26 -0.93 16 20 C -0.14 -1.55 10.96 -38.90 -0.43 -1.98 16 21 C 0.05 0.58 7.97 -17.03 -0.14 0.44 16 22 Cl 0.03 0.28 29.33 -51.86 -1.52 -1.24 16 23 N -0.33 -4.22 12.05 32.82 0.40 -3.82 16 24 O 0.14 1.76 8.43 15.52 0.13 1.89 16 25 C 0.12 1.81 6.28 -3.15 -0.02 1.79 16 26 C 0.19 3.91 3.60 -4.16 -0.02 3.90 16 27 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 28 H 0.02 0.34 8.14 -51.92 -0.42 -0.09 16 29 H 0.05 1.01 7.93 -51.93 -0.41 0.59 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.96 7.14 -51.93 -0.37 0.59 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.88 7.63 -51.93 -0.40 0.49 16 35 H 0.10 1.85 7.48 -51.93 -0.39 1.46 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.02 5.56 -51.93 -0.29 0.73 16 38 H 0.19 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.08 1.26 7.68 -51.93 -0.40 0.86 16 40 H 0.08 1.14 7.60 -51.93 -0.39 0.75 16 41 H 0.09 2.13 6.08 -51.93 -0.32 1.82 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -27.63 352.56 -8.19 -35.81 By element: Atomic # 1 Polarization: 5.02 SS G_CDS: -5.47 Total: -0.45 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -1.72 Total: 2.29 kcal Atomic # 7 Polarization: -50.53 SS G_CDS: 0.02 Total: -50.52 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: 0.22 Total: -6.65 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 17 Polarization: 0.28 SS G_CDS: -1.52 Total: -1.24 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -27.63 -8.19 -35.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040502543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.770 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds