Wall clock time and date at job start Tue Mar 31 2020 22:39:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86793 * 120.00358 * 2 1 4 4 H 1.48495 * 109.47688 * 239.99520 * 3 2 1 5 5 H 1.48503 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48511 * 109.47232 * 119.99592 * 3 2 1 7 7 C 1.38814 * 119.99789 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99865 * 163.21768 * 7 2 1 9 9 N 1.36933 * 120.00011 * 342.95335 * 7 2 1 10 10 C 1.46932 * 120.68725 * 152.49348 * 9 7 2 11 11 C 1.53185 * 108.88997 * 125.95912 * 10 9 7 12 12 C 1.53127 * 109.29803 * 55.07135 * 11 10 9 13 13 C 1.52496 * 109.61654 * 299.51111 * 12 11 10 14 14 C 1.54187 * 110.02326 * 298.38093 * 13 12 11 15 15 C 1.55042 * 102.72313 * 219.28792 * 14 13 12 16 16 N 1.48150 * 103.31006 * 37.01704 * 15 14 13 17 17 C 1.34786 * 127.02079 * 141.00885 * 16 15 14 18 18 O 1.21574 * 119.99878 * 179.97438 * 17 16 15 19 19 C 1.47512 * 119.99725 * 359.97438 * 17 16 15 20 20 C 1.36790 * 126.92812 * 179.70884 * 19 17 16 21 21 C 1.41411 * 103.83649 * 179.87495 * 20 19 17 22 22 Cl 1.73605 * 126.72295 * 180.13367 * 21 20 19 23 23 N 1.30222 * 106.55175 * 0.39266 * 21 20 19 24 24 O 1.20878 * 111.96060 * 359.74706 * 23 21 20 25 25 C 1.47615 * 105.96088 * 320.98921 * 16 15 14 26 26 C 1.47036 * 120.68202 * 332.20857 * 9 7 2 27 27 H 0.97000 * 119.99492 * 0.02562 * 1 2 3 28 28 H 1.09008 * 109.56989 * 245.77753 * 10 9 7 29 29 H 1.08994 * 109.56695 * 6.13653 * 10 9 7 30 30 H 1.08990 * 109.50519 * 175.02395 * 11 10 9 31 31 H 1.09004 * 109.49834 * 295.13189 * 11 10 9 32 32 H 1.08997 * 109.44527 * 59.55076 * 12 11 10 33 33 H 1.09001 * 109.44797 * 179.49730 * 12 11 10 34 34 H 1.09006 * 110.75817 * 337.59634 * 14 13 12 35 35 H 1.09005 * 110.75976 * 100.97505 * 14 13 12 36 36 H 1.09002 * 110.64553 * 278.56056 * 15 14 13 37 37 H 1.08997 * 110.78897 * 155.54585 * 15 14 13 38 38 H 1.07999 * 128.07933 * 359.97438 * 20 19 17 39 39 H 1.09003 * 109.97210 * 265.95859 * 25 16 15 40 40 H 1.08993 * 109.97609 * 144.68415 * 25 16 15 41 41 H 1.08993 * 109.58482 * 352.60016 * 26 9 7 42 42 H 1.09000 * 109.57844 * 113.00891 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0557 -1.2222 -0.2695 9 7 1.3707 -2.3618 0.3487 10 6 1.8215 -3.6554 -0.1826 11 6 2.0795 -4.6095 0.9878 12 6 0.8197 -4.7009 1.8534 13 6 0.4743 -3.3206 2.4021 14 6 1.6219 -2.8042 3.2930 15 6 0.8661 -2.1114 4.4560 16 7 -0.3114 -2.9856 4.6662 17 6 -0.8661 -3.3303 5.8452 18 8 -1.8379 -4.0604 5.8694 19 6 -0.2940 -2.8218 7.1062 20 6 -0.7430 -3.0746 8.3733 21 6 0.1528 -2.3566 9.1990 22 17 0.1248 -2.2710 10.9328 23 7 0.9994 -1.7677 8.4039 24 8 0.7720 -2.0103 7.2418 25 6 -0.7535 -3.4015 3.3206 26 6 0.2224 -2.3388 1.2668 27 1 -0.4849 0.8401 -0.0004 28 1 1.0506 -4.0727 -0.8305 29 1 2.7417 -3.5164 -0.7499 30 1 2.3292 -5.5982 0.6031 31 1 2.9072 -4.2326 1.5887 32 1 -0.0095 -5.0692 1.2495 33 1 0.9977 -5.3862 2.6822 34 1 2.2258 -3.6325 3.6637 35 1 2.2387 -2.0870 2.7514 36 1 0.5534 -1.1079 4.1674 37 1 1.4844 -2.0770 5.3530 38 1 -1.5840 -3.6821 8.6731 39 1 -1.5327 -2.7297 2.9605 40 1 -1.1285 -4.4244 3.3515 41 1 0.1003 -1.3352 1.6740 42 1 -0.6805 -2.6298 0.7299 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001040502543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:27 Heat of formation + Delta-G solvation = 41.372175 kcal Electronic energy + Delta-G solvation = -27963.407645 eV Core-core repulsion = 23973.167962 eV Total energy + Delta-G solvation = -3990.239683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.41599 -41.53303 -39.89121 -38.29931 -37.38976 -35.05390 -34.83121 -33.63216 -32.55809 -31.68778 -30.54748 -27.68146 -27.18161 -25.13794 -24.84223 -23.97038 -23.75783 -22.32585 -21.47851 -19.84367 -19.22543 -19.05452 -18.21945 -17.73828 -17.29363 -17.01200 -16.59650 -16.06367 -15.72686 -15.55258 -15.18132 -15.11524 -14.88714 -14.54249 -14.23958 -14.05873 -13.91854 -13.74940 -13.52100 -13.31754 -13.10690 -12.87008 -12.66007 -12.50470 -12.35816 -12.26764 -12.14874 -11.80792 -11.68991 -11.54944 -11.31937 -11.28381 -11.11993 -11.09957 -10.97180 -10.45791 -9.91900 -8.59541 -7.81361 -5.24654 -0.55233 0.22088 0.56252 1.19064 1.51133 1.53390 1.58926 1.70163 1.86669 2.56104 2.88245 3.30685 3.36307 3.45442 3.62239 3.69850 3.72485 3.89034 3.98665 4.27937 4.33768 4.38732 4.49164 4.52694 4.62315 4.63055 4.77053 4.81689 4.88008 4.96737 5.06940 5.16091 5.23351 5.31947 5.37704 5.43898 5.53839 5.66276 5.73086 5.81686 6.17766 6.45468 6.47948 6.73220 7.22056 7.93677 8.45624 9.24563 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014459 B = 0.003164 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.017640 B = 8847.743703 C = 9945.350200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.043 4.043 3 Si 0.955 3.045 4 H -0.281 1.281 5 H -0.299 1.299 6 H -0.275 1.275 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.604 5.604 10 C 0.137 3.863 11 C -0.122 4.122 12 C -0.091 4.091 13 C -0.086 4.086 14 C -0.104 4.104 15 C 0.097 3.903 16 N -0.598 5.598 17 C 0.621 3.379 18 O -0.540 6.540 19 C -0.067 4.067 20 C -0.124 4.124 21 C 0.052 3.948 22 Cl 0.049 6.951 23 N -0.344 5.344 24 O 0.133 5.867 25 C 0.124 3.876 26 C 0.200 3.800 27 H 0.248 0.752 28 H 0.010 0.990 29 H 0.051 0.949 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.103 0.897 38 H 0.217 0.783 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.059 0.941 42 H -0.010 1.010 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 -8.584 17.028 19.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.239 4.239 3 Si 0.784 3.216 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.201 1.201 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.326 5.326 10 C 0.012 3.988 11 C -0.161 4.161 12 C -0.129 4.129 13 C -0.088 4.088 14 C -0.142 4.142 15 C -0.025 4.025 16 N -0.329 5.329 17 C 0.407 3.593 18 O -0.419 6.419 19 C -0.133 4.133 20 C -0.147 4.147 21 C -0.131 4.131 22 Cl 0.077 6.923 23 N -0.046 5.046 24 O 0.058 5.942 25 C 0.002 3.998 26 C 0.074 3.926 27 H 0.057 0.943 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.233 0.767 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.008 0.992 Dipole moment (debyes) X Y Z Total from point charges 1.439 -8.048 17.463 19.282 hybrid contribution -0.535 0.909 -0.185 1.071 sum 0.904 -7.139 17.278 18.717 Atomic orbital electron populations 1.70163 1.06447 1.25624 1.55599 1.25621 0.95805 1.00900 1.01564 0.85535 0.77692 0.80044 0.78355 1.20668 1.22595 1.20075 1.19380 0.92662 0.85792 1.40474 0.91703 1.44228 1.35558 1.02054 1.50803 1.21085 0.96974 0.86238 0.94485 1.21902 0.97592 0.99242 0.97339 1.21383 0.98066 0.94291 0.99160 1.21574 0.93962 0.97809 0.95494 1.22584 0.96760 1.00576 0.94321 1.22920 0.85745 0.93723 1.00143 1.48790 1.31277 1.47451 1.05342 1.16071 0.82561 0.80466 0.80197 1.90865 1.26890 1.38340 1.85805 1.23965 0.92725 0.99629 0.96974 1.23011 1.01899 1.01445 0.88321 1.24225 0.96371 1.01193 0.91341 1.98435 1.97710 1.97248 0.98891 1.73858 1.21649 1.19252 0.89850 1.85161 1.38810 1.49943 1.20281 1.22106 0.97025 1.01155 0.79539 1.20368 0.87472 0.96806 0.87960 0.94318 0.97244 0.93079 0.90279 0.91959 0.92521 0.90877 0.89750 0.90342 0.90899 0.87943 0.76651 0.91862 0.89475 0.92263 0.99161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.50 11.20 21.65 0.24 -52.26 16 2 C -0.04 -2.28 4.92 84.86 0.42 -1.86 16 3 Si 0.95 42.89 29.59 68.60 2.03 44.92 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.25 -12.91 9.58 84.03 0.81 -12.11 16 8 H 0.07 3.25 7.88 -2.91 -0.02 3.23 16 9 N -0.60 -27.62 2.52 -700.75 -1.76 -29.38 16 10 C 0.14 5.21 6.50 86.36 0.56 5.78 16 11 C -0.12 -3.52 5.89 30.70 0.18 -3.34 16 12 C -0.09 -2.56 4.34 30.47 0.13 -2.43 16 13 C -0.09 -2.76 0.63 -52.03 -0.03 -2.79 16 14 C -0.10 -3.08 4.99 31.70 0.16 -2.92 16 15 C 0.10 2.62 6.75 86.76 0.59 3.20 16 16 N -0.60 -16.74 3.30 -813.46 -2.68 -19.43 16 17 C 0.62 17.10 7.89 86.69 0.68 17.79 16 18 O -0.54 -17.25 17.26 -3.95 -0.07 -17.32 16 19 C -0.07 -1.57 7.10 24.38 0.17 -1.39 16 20 C -0.12 -2.38 10.96 22.71 0.25 -2.13 16 21 C 0.05 1.04 7.97 85.71 0.68 1.73 16 22 Cl 0.05 0.79 29.33 -2.72 -0.08 0.71 16 23 N -0.34 -8.18 12.05 -51.04 -0.61 -8.79 16 24 O 0.13 3.16 8.43 65.74 0.55 3.71 16 25 C 0.12 3.74 6.28 86.35 0.54 4.29 16 26 C 0.20 8.65 3.60 86.01 0.31 8.96 16 27 H 0.25 13.75 8.31 -92.71 -0.77 12.98 16 28 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.80 7.14 -2.39 -0.02 1.79 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 34 H 0.08 2.14 7.63 -2.38 -0.02 2.12 16 35 H 0.08 2.78 7.48 -2.38 -0.02 2.76 16 36 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.39 5.56 -2.39 -0.01 2.37 16 38 H 0.22 3.03 8.06 -2.91 -0.02 3.01 16 39 H 0.06 2.10 7.68 -2.39 -0.02 2.08 16 40 H 0.09 2.47 7.60 -2.39 -0.02 2.45 16 41 H 0.06 2.93 6.08 -2.39 -0.01 2.92 16 42 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: -1.00 -60.27 352.56 4.12 -56.15 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: 1.05 Total: 8.92 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 5.45 Total: 12.76 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -4.82 Total: -109.86 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: 0.49 Total: -13.60 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 17 Polarization: 0.79 SS G_CDS: -0.08 Total: 0.71 kcal Total: -60.27 4.12 -56.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001040502543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.523 kcal (2) G-P(sol) polarization free energy of solvation -60.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds