Wall clock time and date at job start Tue Mar 31 2020 22:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35517 * 117.00031 * 2 1 4 4 N 1.32402 * 119.53776 * 0.26804 * 3 2 1 5 5 C 1.31646 * 121.82217 * 180.31072 * 4 3 2 6 6 C 1.39555 * 120.64524 * 359.68460 * 5 4 3 7 7 C 1.47619 * 120.49459 * 180.02562 * 6 5 4 8 8 O 1.21586 * 119.99856 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99915 * 359.97438 * 7 6 5 10 10 C 1.46493 * 119.99839 * 179.97438 * 9 7 6 11 11 C 1.53002 * 110.88717 * 59.29879 * 10 9 7 12 12 C 1.55163 * 111.00293 * 183.18169 * 10 9 7 13 13 C 1.54418 * 102.89649 * 82.59474 * 12 10 9 14 14 N 1.47025 * 107.28366 * 22.18458 * 13 12 10 15 15 C 1.36930 * 125.65175 * 181.02628 * 14 13 12 16 16 H 1.07998 * 120.00423 * 180.02562 * 15 14 13 17 17 C 1.38815 * 119.99838 * 0.04093 * 15 14 13 18 18 N 1.31616 * 119.99951 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00046 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47382 * 89.99748 * 19 17 15 21 21 H 1.48503 * 109.46873 * 210.00247 * 19 17 15 22 22 H 1.48502 * 109.46683 * 329.99693 * 19 17 15 23 23 C 1.47428 * 108.69988 * 1.06369 * 14 13 12 24 24 C 1.40251 * 119.01301 * 0.02562 * 6 5 4 25 25 C 1.38094 * 118.34405 * 359.97438 * 24 6 5 26 26 Cl 1.73599 * 120.37677 * 179.97438 * 25 24 6 27 27 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47039 * 299.99905 * 1 2 3 29 29 H 1.09001 * 109.46828 * 59.99755 * 1 2 3 30 30 H 1.07990 * 119.68148 * 179.70395 * 5 4 3 31 31 H 0.97001 * 119.99843 * 0.02562 * 9 7 6 32 32 H 1.08998 * 109.46888 * 60.70277 * 11 10 9 33 33 H 1.09008 * 109.46707 * 180.69896 * 11 10 9 34 34 H 1.08992 * 109.47182 * 300.70158 * 11 10 9 35 35 H 1.09010 * 110.71769 * 200.93636 * 12 10 9 36 36 H 1.08999 * 110.71946 * 324.20678 * 12 10 9 37 37 H 1.08998 * 109.87732 * 262.76758 * 13 12 10 38 38 H 1.09002 * 109.88010 * 141.61052 * 13 12 10 39 39 H 0.97005 * 120.00041 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.36509 * 217.02987 * 23 14 13 41 41 H 1.09001 * 110.45957 * 94.76080 * 23 14 13 42 42 H 1.07993 * 120.83300 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3142 2.3120 0.0054 5 6 1.8646 3.5079 -0.0004 6 6 3.2527 3.6521 -0.0060 7 6 3.8663 4.9947 -0.0120 8 8 5.0767 5.1098 -0.0163 9 7 3.0849 6.0928 -0.0126 10 6 3.6939 7.4251 -0.0179 11 6 4.5808 7.6145 -1.2502 12 6 2.6099 8.5324 0.0628 13 6 2.3105 8.6120 1.5756 14 7 3.4784 8.0649 2.2814 15 6 3.6034 7.9385 3.6391 16 1 4.5060 7.5227 4.0620 17 6 2.5698 8.3447 4.4720 18 7 1.4696 8.8508 3.9567 19 14 2.7406 8.1731 6.3243 20 1 3.3441 9.4098 6.8825 21 1 1.4003 7.9605 6.9273 22 1 3.6131 7.0125 6.6355 23 6 4.4931 7.6756 1.2852 24 6 4.0560 2.5024 -0.0059 25 6 3.4353 1.2689 0.0003 26 17 4.3785 -0.1885 0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.2359 4.3859 -0.0006 31 1 2.1192 6.0008 -0.0087 32 1 3.9766 7.5129 -2.1517 33 1 5.0311 8.6069 -1.2245 34 1 5.3663 6.8590 -1.2521 35 1 3.0005 9.4818 -0.3036 36 1 1.7186 8.2407 -0.4927 37 1 1.4254 8.0206 1.8098 38 1 2.1533 9.6501 1.8682 39 1 0.7475 9.1350 4.5387 40 1 5.0026 6.7645 1.5989 41 1 5.2131 8.4810 1.1400 42 1 5.1331 2.5798 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046854807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:37 Heat of formation + Delta-G solvation = -7.011586 kcal Electronic energy + Delta-G solvation = -27425.147154 eV Core-core repulsion = 23432.809394 eV Total energy + Delta-G solvation = -3992.337761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.15227 -39.84318 -38.23523 -37.15849 -36.80415 -34.06384 -32.67760 -32.31186 -30.92278 -29.79736 -28.70047 -27.64419 -25.69631 -24.59853 -23.86803 -23.44742 -21.21151 -20.22538 -19.24338 -18.87300 -17.87783 -17.54249 -16.73513 -16.46771 -15.59681 -15.51516 -14.85859 -14.71993 -14.61285 -14.48061 -13.93875 -13.82216 -13.64832 -13.31087 -13.21639 -12.78930 -12.28676 -12.22271 -12.09126 -11.95785 -11.85711 -11.69320 -11.47722 -11.35132 -10.91080 -10.89774 -10.56400 -10.40775 -10.22336 -10.08302 -10.02143 -9.98374 -9.67362 -9.40452 -8.82400 -8.67129 -8.55410 -6.81522 -5.71971 -3.03768 0.40842 0.72683 1.78100 2.61339 2.79413 3.28502 3.40232 3.45864 3.47335 3.62671 3.87585 4.39493 4.50345 4.56140 4.73521 4.82225 4.99618 5.03950 5.04739 5.29694 5.34593 5.39470 5.45874 5.58839 5.66096 5.69543 5.86024 5.97519 6.08923 6.13137 6.31691 6.36448 6.49160 6.63936 6.72033 6.78546 7.05288 7.29983 7.52803 7.53865 7.74638 7.80302 8.24863 8.40859 9.22701 9.82636 10.48194 11.40026 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.003381 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.413206 B = 8279.918425 C = 9206.949004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.293 6.293 3 C 0.350 3.650 4 N -0.527 5.527 5 C 0.185 3.815 6 C -0.204 4.204 7 C 0.571 3.429 8 O -0.532 6.532 9 N -0.693 5.693 10 C 0.157 3.843 11 C -0.151 4.151 12 C -0.147 4.147 13 C 0.177 3.823 14 N -0.603 5.603 15 C -0.222 4.222 16 H 0.076 0.924 17 C -0.008 4.008 18 N -0.924 5.924 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.282 1.282 23 C 0.132 3.868 24 C 0.024 3.976 25 C -0.118 4.118 26 Cl -0.039 7.039 27 H 0.100 0.900 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.172 0.828 31 H 0.396 0.604 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.044 0.956 39 H 0.251 0.749 40 H 0.053 0.947 41 H 0.027 0.973 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.474 -13.826 -13.279 19.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.199 6.199 3 C 0.170 3.830 4 N -0.250 5.250 5 C 0.027 3.973 6 C -0.210 4.210 7 C 0.357 3.643 8 O -0.410 6.410 9 N -0.343 5.343 10 C 0.070 3.930 11 C -0.209 4.209 12 C -0.186 4.186 13 C 0.052 3.948 14 N -0.329 5.329 15 C -0.351 4.351 16 H 0.094 0.906 17 C -0.204 4.204 18 N -0.572 5.572 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.005 3.995 24 C -0.002 4.002 25 C -0.148 4.148 26 Cl -0.011 7.011 27 H 0.118 0.882 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.189 0.811 31 H 0.232 0.768 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -1.473 -14.181 -13.068 19.340 hybrid contribution 0.102 0.005 1.151 1.155 sum -1.372 -14.176 -11.917 18.571 Atomic orbital electron populations 1.22990 0.76393 1.03430 1.03013 1.86285 1.23520 1.23529 1.86549 1.19708 0.87703 0.85649 0.89926 1.67494 1.39109 0.98265 1.20165 1.22807 0.91878 0.94016 0.88617 1.20926 0.94502 0.95063 1.10519 1.17596 0.86741 0.83241 0.76766 1.90746 1.13551 1.86667 1.50078 1.45705 1.09567 1.05341 1.73734 1.21540 0.94470 0.80775 0.96187 1.22013 1.00210 1.02729 0.95983 1.23263 0.97093 0.97094 1.01105 1.21182 0.90455 0.98921 0.84243 1.44439 1.14055 1.73019 1.01410 1.19058 1.00844 1.35010 0.80148 0.90590 1.24745 0.96406 1.01319 0.97937 1.69939 1.06292 1.47977 1.33023 0.86151 0.76742 0.77771 0.85342 1.21616 1.21733 1.20764 1.21879 0.91829 0.98035 0.87721 1.21487 1.02048 0.88054 0.88600 1.20706 0.89360 0.90080 1.14665 1.98380 1.71318 1.34277 1.97103 0.88200 0.91691 0.91857 0.81122 0.76838 0.93093 0.91737 0.90666 0.90706 0.91687 0.93623 0.93778 0.93869 0.92887 0.95563 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.37 101.05 1.05 1.34 16 2 O -0.29 -3.28 9.93 -18.24 -0.18 -3.46 16 3 C 0.35 4.34 7.49 -16.93 -0.13 4.22 16 4 N -0.53 -6.49 9.18 -12.94 -0.12 -6.61 16 5 C 0.18 2.21 10.71 -17.14 -0.18 2.02 16 6 C -0.20 -2.73 5.89 -104.82 -0.62 -3.35 16 7 C 0.57 8.99 7.15 -12.43 -0.09 8.90 16 8 O -0.53 -9.75 13.22 5.29 0.07 -9.68 16 9 N -0.69 -10.54 5.13 -46.62 -0.24 -10.78 16 10 C 0.16 2.62 0.82 -129.67 -0.11 2.51 16 11 C -0.15 -2.17 8.57 37.16 0.32 -1.85 16 12 C -0.15 -2.45 5.99 -24.84 -0.15 -2.60 16 13 C 0.18 4.01 5.37 -3.01 -0.02 4.00 16 14 N -0.60 -15.03 3.39 -170.01 -0.58 -15.61 16 15 C -0.22 -6.19 10.28 -15.06 -0.15 -6.34 16 16 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -26.47 10.31 55.49 0.57 -25.90 16 19 Si 0.91 22.20 29.55 -169.99 -5.02 17.17 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.13 2.80 6.13 -2.53 -0.02 2.79 16 24 C 0.02 0.31 9.50 -38.88 -0.37 -0.06 16 25 C -0.12 -1.46 6.35 -39.26 -0.25 -1.71 16 26 Cl -0.04 -0.44 28.53 -51.86 -1.48 -1.92 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 29 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 30 H 0.17 1.66 6.41 -52.49 -0.34 1.33 16 31 H 0.40 5.18 6.55 -40.82 -0.27 4.91 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.87 8.13 -51.92 -0.42 0.45 16 34 H 0.07 1.18 6.22 -51.93 -0.32 0.86 16 35 H 0.07 1.17 8.04 -51.92 -0.42 0.75 16 36 H 0.06 0.92 8.07 -51.93 -0.42 0.50 16 37 H 0.05 1.13 7.38 -51.93 -0.38 0.74 16 38 H 0.04 1.13 7.51 -51.93 -0.39 0.74 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.70 16 40 H 0.05 1.22 6.58 -51.93 -0.34 0.87 16 41 H 0.03 0.56 8.03 -51.93 -0.42 0.15 16 42 H 0.16 2.00 7.73 -52.49 -0.41 1.59 16 LS Contribution 359.93 15.07 5.42 5.42 Total: -1.00 -32.11 359.93 -7.71 -39.82 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.35 Total: 2.01 kcal Atomic # 6 Polarization: 10.34 SS G_CDS: -0.81 Total: 9.53 kcal Atomic # 7 Polarization: -58.53 SS G_CDS: -0.36 Total: -58.89 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -0.11 Total: -13.14 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.11 -7.71 -39.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046854807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.809 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds