Wall clock time and date at job start Tue Mar 31 2020 22:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35517 * 117.00031 * 2 1 4 4 N 1.32402 * 119.53776 * 0.26804 * 3 2 1 5 5 C 1.31646 * 121.82217 * 180.31072 * 4 3 2 6 6 C 1.39555 * 120.64524 * 359.68460 * 5 4 3 7 7 C 1.47619 * 120.49459 * 180.02562 * 6 5 4 8 8 O 1.21586 * 119.99856 * 179.97438 * 7 6 5 9 9 N 1.34776 * 119.99915 * 359.97438 * 7 6 5 10 10 C 1.46493 * 119.99839 * 179.97438 * 9 7 6 11 11 C 1.53002 * 110.88717 * 59.29879 * 10 9 7 12 12 C 1.55163 * 111.00293 * 183.18169 * 10 9 7 13 13 C 1.54418 * 102.89649 * 82.59474 * 12 10 9 14 14 N 1.47025 * 107.28366 * 22.18458 * 13 12 10 15 15 C 1.36930 * 125.65175 * 181.02628 * 14 13 12 16 16 H 1.07998 * 120.00423 * 180.02562 * 15 14 13 17 17 C 1.38815 * 119.99838 * 0.04093 * 15 14 13 18 18 N 1.31616 * 119.99951 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00046 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47382 * 89.99748 * 19 17 15 21 21 H 1.48503 * 109.46873 * 210.00247 * 19 17 15 22 22 H 1.48502 * 109.46683 * 329.99693 * 19 17 15 23 23 C 1.47428 * 108.69988 * 1.06369 * 14 13 12 24 24 C 1.40251 * 119.01301 * 0.02562 * 6 5 4 25 25 C 1.38094 * 118.34405 * 359.97438 * 24 6 5 26 26 Cl 1.73599 * 120.37677 * 179.97438 * 25 24 6 27 27 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47039 * 299.99905 * 1 2 3 29 29 H 1.09001 * 109.46828 * 59.99755 * 1 2 3 30 30 H 1.07990 * 119.68148 * 179.70395 * 5 4 3 31 31 H 0.97001 * 119.99843 * 0.02562 * 9 7 6 32 32 H 1.08998 * 109.46888 * 60.70277 * 11 10 9 33 33 H 1.09008 * 109.46707 * 180.69896 * 11 10 9 34 34 H 1.08992 * 109.47182 * 300.70158 * 11 10 9 35 35 H 1.09010 * 110.71769 * 200.93636 * 12 10 9 36 36 H 1.08999 * 110.71946 * 324.20678 * 12 10 9 37 37 H 1.08998 * 109.87732 * 262.76758 * 13 12 10 38 38 H 1.09002 * 109.88010 * 141.61052 * 13 12 10 39 39 H 0.97005 * 120.00041 * 180.02562 * 18 17 15 40 40 H 1.08997 * 110.36509 * 217.02987 * 23 14 13 41 41 H 1.09001 * 110.45957 * 94.76080 * 23 14 13 42 42 H 1.07993 * 120.83300 * 180.02562 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 7 1.3142 2.3120 0.0054 5 6 1.8646 3.5079 -0.0004 6 6 3.2527 3.6521 -0.0060 7 6 3.8663 4.9947 -0.0120 8 8 5.0767 5.1098 -0.0163 9 7 3.0849 6.0928 -0.0126 10 6 3.6939 7.4251 -0.0179 11 6 4.5808 7.6145 -1.2502 12 6 2.6099 8.5324 0.0628 13 6 2.3105 8.6120 1.5756 14 7 3.4784 8.0649 2.2814 15 6 3.6034 7.9385 3.6391 16 1 4.5060 7.5227 4.0620 17 6 2.5698 8.3447 4.4720 18 7 1.4696 8.8508 3.9567 19 14 2.7406 8.1731 6.3243 20 1 3.3441 9.4098 6.8825 21 1 1.4003 7.9605 6.9273 22 1 3.6131 7.0125 6.6355 23 6 4.4931 7.6756 1.2852 24 6 4.0560 2.5024 -0.0059 25 6 3.4353 1.2689 0.0003 26 17 4.3785 -0.1885 0.0001 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.2359 4.3859 -0.0006 31 1 2.1192 6.0008 -0.0087 32 1 3.9766 7.5129 -2.1517 33 1 5.0311 8.6069 -1.2245 34 1 5.3663 6.8590 -1.2521 35 1 3.0005 9.4818 -0.3036 36 1 1.7186 8.2407 -0.4927 37 1 1.4254 8.0206 1.8098 38 1 2.1533 9.6501 1.8682 39 1 0.7475 9.1350 4.5387 40 1 5.0026 6.7645 1.5989 41 1 5.2131 8.4810 1.1400 42 1 5.1331 2.5798 -0.0097 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046854807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:36 Heat of formation + Delta-G solvation = -29.639677 kcal Electronic energy + Delta-G solvation = -27426.128382 eV Core-core repulsion = 23432.809394 eV Total energy + Delta-G solvation = -3993.318988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.14823 -41.07046 -39.31578 -38.50564 -37.73116 -35.71415 -33.89410 -33.63834 -32.33191 -31.17010 -30.26038 -28.40132 -27.48784 -25.74789 -25.23688 -24.59643 -22.54012 -21.89406 -20.58528 -19.80528 -19.19588 -18.61305 -18.41281 -17.31965 -17.00908 -16.61907 -16.58123 -16.11052 -15.73782 -15.57634 -15.38655 -15.16484 -14.76798 -14.59589 -14.29793 -14.05990 -13.84006 -13.51679 -13.38574 -13.18923 -13.05503 -12.87911 -12.82826 -12.73829 -12.28095 -12.25357 -12.11134 -12.03335 -11.97094 -11.68473 -11.60453 -11.22321 -10.98357 -10.69670 -10.65127 -10.06153 -9.66100 -8.83842 -7.84557 -5.17368 -0.58481 -0.24084 0.84654 1.44527 1.45047 1.53611 1.68354 1.77760 2.10740 2.48890 2.55298 2.96961 3.33692 3.40026 3.59717 3.62049 3.72417 3.80268 3.87047 4.07720 4.22297 4.31973 4.42244 4.45014 4.66913 4.69051 4.73202 4.74909 4.83120 4.91851 4.93287 4.97389 5.07591 5.12737 5.41221 5.45345 5.64548 5.71480 5.80756 5.87177 6.22256 6.34804 6.56124 7.13969 7.20501 7.79869 8.43497 9.24977 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011331 B = 0.003381 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2470.413206 B = 8279.918425 C = 9206.949004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.300 6.300 3 C 0.349 3.651 4 N -0.530 5.530 5 C 0.193 3.807 6 C -0.217 4.217 7 C 0.571 3.429 8 O -0.563 6.563 9 N -0.691 5.691 10 C 0.168 3.832 11 C -0.142 4.142 12 C -0.128 4.128 13 C 0.183 3.817 14 N -0.621 5.621 15 C -0.241 4.241 16 H 0.067 0.933 17 C -0.055 4.055 18 N -0.943 5.943 19 Si 0.968 3.032 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.277 1.277 23 C 0.128 3.872 24 C 0.024 3.976 25 C -0.125 4.125 26 Cl -0.032 7.032 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.193 0.807 31 H 0.408 0.592 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.021 0.979 38 H 0.008 0.992 39 H 0.247 0.753 40 H 0.030 0.970 41 H 0.026 0.974 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.320 -14.593 -14.524 20.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.205 6.205 3 C 0.169 3.831 4 N -0.254 5.254 5 C 0.035 3.965 6 C -0.223 4.223 7 C 0.358 3.642 8 O -0.443 6.443 9 N -0.341 5.341 10 C 0.081 3.919 11 C -0.200 4.200 12 C -0.166 4.166 13 C 0.059 3.941 14 N -0.347 5.347 15 C -0.370 4.370 16 H 0.085 0.915 17 C -0.249 4.249 18 N -0.592 5.592 19 Si 0.797 3.203 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.203 1.203 23 C 0.002 3.998 24 C -0.002 4.002 25 C -0.155 4.155 26 Cl -0.003 7.003 27 H 0.146 0.854 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.210 0.790 31 H 0.245 0.755 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.039 0.961 38 H 0.026 0.974 39 H 0.057 0.943 40 H 0.048 0.952 41 H 0.043 0.957 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -2.329 -14.970 -14.338 20.859 hybrid contribution 0.368 0.169 1.562 1.614 sum -1.960 -14.801 -12.775 19.650 Atomic orbital electron populations 1.23261 0.74653 1.05395 1.03027 1.86292 1.25252 1.22893 1.86053 1.19892 0.87900 0.86131 0.89151 1.67577 1.39000 0.98298 1.20557 1.23102 0.91482 0.94670 0.87254 1.20748 0.95185 0.93918 1.12471 1.17883 0.86397 0.84025 0.75871 1.90731 1.14901 1.87192 1.51477 1.45654 1.10208 1.04768 1.73515 1.21391 0.94159 0.81553 0.94799 1.21940 0.99654 1.02845 0.95558 1.23138 0.98667 0.98088 0.96742 1.20990 0.89060 0.95966 0.88116 1.44678 1.15579 1.73177 1.01250 1.19298 1.00682 1.34886 0.82129 0.91465 1.25438 0.96302 1.01469 1.01681 1.70126 1.06600 1.48551 1.33909 0.85231 0.76556 0.77705 0.80763 1.21347 1.21641 1.20280 1.21995 0.91717 0.96735 0.89331 1.21528 1.02158 0.88224 0.88291 1.20726 0.89644 0.90212 1.14930 1.98379 1.71134 1.33714 1.97083 0.85359 0.92068 0.91388 0.79022 0.75507 0.90331 0.90702 0.92133 0.88951 0.88057 0.96106 0.97424 0.94347 0.95197 0.95661 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.37 113.37 1.18 1.60 16 2 O -0.30 -6.21 9.93 -88.19 -0.88 -7.08 16 3 C 0.35 8.20 7.49 84.85 0.64 8.83 16 4 N -0.53 -12.23 9.18 -307.74 -2.82 -15.06 16 5 C 0.19 4.31 10.71 85.04 0.91 5.22 16 6 C -0.22 -5.63 5.89 -19.99 -0.12 -5.75 16 7 C 0.57 17.61 7.15 86.72 0.62 18.23 16 8 O -0.56 -20.65 13.22 -3.99 -0.05 -20.71 16 9 N -0.69 -19.96 5.13 -419.68 -2.15 -22.12 16 10 C 0.17 5.34 0.82 5.00 0.00 5.34 16 11 C -0.14 -3.72 8.57 71.98 0.62 -3.10 16 12 C -0.13 -3.98 5.99 31.82 0.19 -3.79 16 13 C 0.18 8.36 5.37 86.76 0.47 8.82 16 14 N -0.62 -31.43 3.39 -691.79 -2.35 -33.78 16 15 C -0.24 -13.70 10.28 84.04 0.86 -12.83 16 16 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 17 C -0.06 -3.13 5.49 84.86 0.47 -2.66 16 18 N -0.94 -54.91 10.31 21.65 0.22 -54.69 16 19 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 C 0.13 5.47 6.13 86.85 0.53 6.00 16 24 C 0.02 0.60 9.50 22.73 0.22 0.82 16 25 C -0.13 -2.98 6.35 22.48 0.14 -2.83 16 26 Cl -0.03 -0.69 28.53 -2.72 -0.08 -0.76 16 27 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 29 H 0.07 0.89 8.10 -2.39 -0.02 0.87 16 30 H 0.19 3.31 6.41 -2.92 -0.02 3.29 16 31 H 0.41 9.79 6.55 -92.71 -0.61 9.18 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.07 1.81 8.13 -2.38 -0.02 1.79 16 34 H 0.06 1.81 6.22 -2.39 -0.01 1.80 16 35 H 0.09 2.61 8.04 -2.38 -0.02 2.59 16 36 H 0.10 2.46 8.07 -2.39 -0.02 2.45 16 37 H 0.02 1.04 7.38 -2.39 -0.02 1.02 16 38 H 0.01 0.39 7.51 -2.39 -0.02 0.38 16 39 H 0.25 14.04 8.31 -92.70 -0.77 13.27 16 40 H 0.03 1.40 6.58 -2.39 -0.02 1.39 16 41 H 0.03 1.09 8.03 -2.39 -0.02 1.07 16 42 H 0.16 4.02 7.73 -2.91 -0.02 3.99 16 Total: -1.00 -70.73 359.93 1.10 -69.63 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.46 Total: 12.51 kcal Atomic # 6 Polarization: 17.17 SS G_CDS: 6.72 Total: 23.89 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -7.10 Total: -125.64 kcal Atomic # 8 Polarization: -26.86 SS G_CDS: -0.93 Total: -27.79 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.76 kcal Total: -70.73 1.10 -69.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046854807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.989 kcal (2) G-P(sol) polarization free energy of solvation -70.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds