Wall clock time and date at job start Tue Mar 31 2020 22:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35527 * 116.99749 * 2 1 4 4 N 1.32406 * 119.53447 * 359.97438 * 3 2 1 5 5 C 1.31649 * 121.81548 * 179.97438 * 4 3 2 6 6 C 1.39553 * 120.64915 * 0.02562 * 5 4 3 7 7 C 1.47617 * 120.49004 * 180.02562 * 6 5 4 8 8 O 1.21586 * 119.99550 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00541 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00404 * 180.02562 * 9 7 6 11 11 C 1.53007 * 110.77734 * 303.24129 * 10 9 7 12 12 C 1.55155 * 110.72384 * 180.02562 * 10 9 7 13 13 C 1.54906 * 101.58202 * 277.14104 * 12 10 9 14 14 N 1.47426 * 104.82959 * 322.98796 * 13 12 10 15 15 C 1.36935 * 125.64598 * 204.09185 * 14 13 12 16 16 H 1.08005 * 119.99877 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00369 * 359.75480 * 15 14 13 18 18 N 1.31617 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99572 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99815 * 19 17 15 23 23 C 1.47018 * 108.70612 * 24.35650 * 14 13 12 24 24 C 1.40243 * 119.00892 * 0.27248 * 6 5 4 25 25 C 1.38089 * 118.34894 * 359.48324 * 24 6 5 26 26 Cl 1.73598 * 120.37975 * 180.21879 * 25 24 6 27 27 H 1.08998 * 109.47566 * 59.99578 * 1 2 3 28 28 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46959 * 299.99765 * 1 2 3 30 30 H 1.08001 * 119.67283 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00005 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47093 * 296.75972 * 11 10 9 33 33 H 1.09001 * 109.46738 * 56.76245 * 11 10 9 34 34 H 1.09004 * 109.46667 * 176.76102 * 11 10 9 35 35 H 1.08996 * 111.00485 * 159.06333 * 12 10 9 36 36 H 1.09002 * 111.03305 * 35.23026 * 12 10 9 37 37 H 1.09004 * 110.36614 * 204.15475 * 13 12 10 38 38 H 1.08999 * 110.37158 * 81.82525 * 13 12 10 39 39 H 0.97004 * 120.00382 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88164 * 118.12840 * 23 14 13 41 41 H 1.08996 * 109.88548 * 239.29371 * 23 14 13 42 42 H 1.08002 * 120.82265 * 179.70196 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 7 1.3140 2.3121 -0.0005 5 6 1.8645 3.5080 0.0000 6 6 3.2525 3.6522 0.0005 7 6 3.8660 4.9949 0.0016 8 8 5.0764 5.1101 0.0016 9 7 3.0846 6.0929 0.0016 10 6 3.6935 7.4254 0.0021 11 6 4.6319 7.5928 1.1990 12 6 2.6018 8.5279 0.0026 13 6 2.2489 8.6167 -1.5031 14 7 3.5320 8.4253 -2.2034 15 6 3.8251 8.8653 -3.4665 16 1 4.7988 8.6735 -3.8928 17 6 2.8691 9.5530 -4.2014 18 7 1.6806 9.7816 -3.6842 19 14 3.2687 10.1525 -5.9248 20 1 4.6613 9.7706 -6.2713 21 1 2.3295 9.5339 -6.8944 22 1 3.1333 11.6304 -5.9785 23 6 4.4425 7.6783 -1.3234 24 6 4.0558 2.5026 -0.0053 25 6 3.4351 1.2691 -0.0004 26 17 4.3784 -0.1883 -0.0015 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2356 4.3860 -0.0009 31 1 2.1189 6.0010 0.0012 32 1 4.0585 7.5205 2.1231 33 1 5.3894 6.8093 1.1791 34 1 5.1162 8.5680 1.1472 35 1 3.0022 9.4740 0.3666 36 1 1.7360 8.2209 0.5894 37 1 1.8311 9.5959 -1.7376 38 1 1.5468 7.8287 -1.7754 39 1 1.0123 10.2618 -4.1977 40 1 4.7103 6.7289 -1.7871 41 1 5.3402 8.2666 -1.1334 42 1 5.1330 2.5802 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046854813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:39 Heat of formation + Delta-G solvation = -5.045531 kcal Electronic energy + Delta-G solvation = -27196.656279 eV Core-core repulsion = 23204.403773 eV Total energy + Delta-G solvation = -3992.252506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.22462 -39.92292 -38.29104 -37.21030 -36.86113 -34.14387 -32.74837 -32.33919 -30.96576 -29.78838 -28.71249 -27.69824 -25.71836 -24.65891 -23.91854 -23.45136 -21.20000 -20.36624 -19.23504 -18.93094 -17.93491 -17.60530 -16.80486 -16.52756 -15.65903 -15.58634 -14.90795 -14.76948 -14.67599 -14.53416 -13.90125 -13.87824 -13.66977 -13.38428 -13.08127 -12.80405 -12.36682 -12.28821 -12.27430 -12.04649 -11.77875 -11.60113 -11.53736 -11.40373 -10.95926 -10.88837 -10.57964 -10.38457 -10.32833 -10.08485 -10.06093 -9.96337 -9.69156 -9.38889 -8.88775 -8.70682 -8.64840 -6.83640 -5.67482 -3.07609 0.33479 0.65716 1.72396 2.55359 2.71871 3.21256 3.39377 3.45605 3.47819 3.54347 3.80477 4.32294 4.48012 4.49463 4.67358 4.74993 4.94503 4.98827 5.06319 5.25738 5.32776 5.36162 5.46031 5.53506 5.59440 5.69819 5.79418 5.99253 6.13133 6.18207 6.30747 6.41666 6.47168 6.65325 6.66182 6.77924 7.05426 7.22865 7.40992 7.61044 7.67882 7.81054 8.30791 8.35149 9.21250 9.81902 10.46129 11.37167 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.002850 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.307937 B = 9822.294952 C =10304.809923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.293 6.293 3 C 0.351 3.649 4 N -0.527 5.527 5 C 0.183 3.817 6 C -0.206 4.206 7 C 0.569 3.431 8 O -0.529 6.529 9 N -0.700 5.700 10 C 0.160 3.840 11 C -0.152 4.152 12 C -0.147 4.147 13 C 0.152 3.848 14 N -0.604 5.604 15 C -0.217 4.217 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.924 5.924 19 Si 0.913 3.087 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.137 3.863 24 C 0.025 3.975 25 C -0.119 4.119 26 Cl -0.038 7.038 27 H 0.064 0.936 28 H 0.100 0.900 29 H 0.063 0.937 30 H 0.172 0.828 31 H 0.396 0.604 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.010 0.990 39 H 0.251 0.749 40 H 0.031 0.969 41 H 0.032 0.968 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 -16.625 12.355 20.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.198 6.198 3 C 0.171 3.829 4 N -0.250 5.250 5 C 0.026 3.974 6 C -0.212 4.212 7 C 0.355 3.645 8 O -0.407 6.407 9 N -0.351 5.351 10 C 0.074 3.926 11 C -0.211 4.211 12 C -0.186 4.186 13 C 0.027 3.973 14 N -0.330 5.330 15 C -0.346 4.346 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.573 5.573 19 Si 0.744 3.256 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.217 1.217 23 C 0.011 3.989 24 C -0.001 4.001 25 C -0.148 4.148 26 Cl -0.010 7.010 27 H 0.083 0.917 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.189 0.811 31 H 0.231 0.769 32 H 0.069 0.931 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.028 0.972 39 H 0.062 0.938 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -2.236 -16.913 12.166 20.954 hybrid contribution 0.252 0.223 -1.018 1.072 sum -1.985 -16.690 11.149 20.169 Atomic orbital electron populations 1.22996 0.76343 1.03488 1.03014 1.86292 1.23558 1.23488 1.86495 1.19716 0.87711 0.85654 0.89827 1.67504 1.39098 0.98259 1.20181 1.22815 0.91852 0.94049 0.88720 1.20929 0.94517 0.95041 1.10705 1.17635 0.86793 0.83261 0.76855 1.90756 1.13536 1.86623 1.49792 1.45898 1.09623 1.05541 1.74009 1.21418 0.94400 0.80704 0.96072 1.22075 0.99881 1.03078 0.96044 1.23372 0.96590 0.97034 1.01574 1.21939 0.87792 1.03118 0.84412 1.44513 1.10699 1.63853 1.13946 1.19139 0.98230 1.28213 0.88994 0.90479 1.24755 0.95917 1.01280 0.98795 1.69782 1.04551 1.46630 1.36377 0.86002 0.77445 0.78213 0.83911 1.20527 1.21822 1.21746 1.21610 0.92975 0.95423 0.88922 1.21496 1.02091 0.88045 0.88517 1.20715 0.89389 0.90138 1.14585 1.98384 1.71281 1.34201 1.97086 0.91701 0.88154 0.91820 0.81098 0.76864 0.93107 0.90440 0.91629 0.90342 0.91806 0.87421 0.97160 0.93848 0.95130 0.95015 0.81710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.27 10.37 101.05 1.05 1.32 16 2 O -0.29 -3.09 9.93 -18.28 -0.18 -3.27 16 3 C 0.35 4.10 7.49 -16.94 -0.13 3.98 16 4 N -0.53 -6.07 9.18 -12.94 -0.12 -6.19 16 5 C 0.18 2.03 10.71 -17.14 -0.18 1.84 16 6 C -0.21 -2.59 5.89 -104.83 -0.62 -3.21 16 7 C 0.57 8.59 6.98 -12.44 -0.09 8.51 16 8 O -0.53 -9.47 13.39 5.29 0.07 -9.39 16 9 N -0.70 -10.26 5.09 -46.91 -0.24 -10.50 16 10 C 0.16 2.70 0.81 -129.98 -0.11 2.59 16 11 C -0.15 -2.28 8.44 37.16 0.31 -1.96 16 12 C -0.15 -2.51 6.07 -24.59 -0.15 -2.66 16 13 C 0.15 3.47 5.85 -2.53 -0.01 3.45 16 14 N -0.60 -15.22 3.39 -170.07 -0.58 -15.80 16 15 C -0.22 -6.06 10.27 -15.06 -0.15 -6.22 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 18 N -0.92 -26.32 10.09 55.49 0.56 -25.76 16 19 Si 0.91 22.07 29.55 -169.99 -5.02 17.05 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 C 0.14 2.96 6.19 -3.06 -0.02 2.94 16 24 C 0.02 0.30 9.50 -38.88 -0.37 -0.07 16 25 C -0.12 -1.38 6.35 -39.27 -0.25 -1.63 16 26 Cl -0.04 -0.41 28.52 -51.86 -1.48 -1.89 16 27 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.17 1.48 6.41 -52.49 -0.34 1.14 16 31 H 0.40 4.83 6.54 -40.82 -0.27 4.57 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.25 5.97 -51.93 -0.31 0.94 16 34 H 0.06 0.95 8.07 -51.93 -0.42 0.53 16 35 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 36 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 37 H 0.11 2.80 5.89 -51.93 -0.31 2.49 16 38 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 40 H 0.03 0.72 6.90 -51.93 -0.36 0.36 16 41 H 0.03 0.70 7.77 -51.93 -0.40 0.29 16 42 H 0.17 1.90 7.73 -52.49 -0.41 1.49 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -32.02 359.05 -7.69 -39.70 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.30 Total: 2.21 kcal Atomic # 6 Polarization: 9.25 SS G_CDS: -0.81 Total: 8.44 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -0.37 Total: -58.25 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: -0.11 Total: -12.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.48 Total: -1.89 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.02 -7.69 -39.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046854813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.656 kcal (2) G-P(sol) polarization free energy of solvation -32.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds