Wall clock time and date at job start Tue Mar 31 2020 22:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35527 * 116.99749 * 2 1 4 4 N 1.32406 * 119.53447 * 359.97438 * 3 2 1 5 5 C 1.31649 * 121.81548 * 179.97438 * 4 3 2 6 6 C 1.39553 * 120.64915 * 0.02562 * 5 4 3 7 7 C 1.47617 * 120.49004 * 180.02562 * 6 5 4 8 8 O 1.21586 * 119.99550 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00541 * 359.97438 * 7 6 5 10 10 C 1.46495 * 120.00404 * 180.02562 * 9 7 6 11 11 C 1.53007 * 110.77734 * 303.24129 * 10 9 7 12 12 C 1.55155 * 110.72384 * 180.02562 * 10 9 7 13 13 C 1.54906 * 101.58202 * 277.14104 * 12 10 9 14 14 N 1.47426 * 104.82959 * 322.98796 * 13 12 10 15 15 C 1.36935 * 125.64598 * 204.09185 * 14 13 12 16 16 H 1.08005 * 119.99877 * 180.02562 * 15 14 13 17 17 C 1.38811 * 120.00369 * 359.75480 * 15 14 13 18 18 N 1.31617 * 119.99773 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00451 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47045 * 359.97438 * 19 17 15 21 21 H 1.48492 * 109.47426 * 119.99572 * 19 17 15 22 22 H 1.48501 * 109.46833 * 239.99815 * 19 17 15 23 23 C 1.47018 * 108.70612 * 24.35650 * 14 13 12 24 24 C 1.40243 * 119.00892 * 0.27248 * 6 5 4 25 25 C 1.38089 * 118.34894 * 359.48324 * 24 6 5 26 26 Cl 1.73598 * 120.37975 * 180.21879 * 25 24 6 27 27 H 1.08998 * 109.47566 * 59.99578 * 1 2 3 28 28 H 1.08998 * 109.47449 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46959 * 299.99765 * 1 2 3 30 30 H 1.08001 * 119.67283 * 179.97438 * 5 4 3 31 31 H 0.97006 * 120.00005 * 0.02562 * 9 7 6 32 32 H 1.08993 * 109.47093 * 296.75972 * 11 10 9 33 33 H 1.09001 * 109.46738 * 56.76245 * 11 10 9 34 34 H 1.09004 * 109.46667 * 176.76102 * 11 10 9 35 35 H 1.08996 * 111.00485 * 159.06333 * 12 10 9 36 36 H 1.09002 * 111.03305 * 35.23026 * 12 10 9 37 37 H 1.09004 * 110.36614 * 204.15475 * 13 12 10 38 38 H 1.08999 * 110.37158 * 81.82525 * 13 12 10 39 39 H 0.97004 * 120.00382 * 180.02562 * 18 17 15 40 40 H 1.09004 * 109.88164 * 118.12840 * 23 14 13 41 41 H 1.08996 * 109.88548 * 239.29371 * 23 14 13 42 42 H 1.08002 * 120.82265 * 179.70196 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 7 1.3140 2.3121 -0.0005 5 6 1.8645 3.5080 0.0000 6 6 3.2525 3.6522 0.0005 7 6 3.8660 4.9949 0.0016 8 8 5.0764 5.1101 0.0016 9 7 3.0846 6.0929 0.0016 10 6 3.6935 7.4254 0.0021 11 6 4.6319 7.5928 1.1990 12 6 2.6018 8.5279 0.0026 13 6 2.2489 8.6167 -1.5031 14 7 3.5320 8.4253 -2.2034 15 6 3.8251 8.8653 -3.4665 16 1 4.7988 8.6735 -3.8928 17 6 2.8691 9.5530 -4.2014 18 7 1.6806 9.7816 -3.6842 19 14 3.2687 10.1525 -5.9248 20 1 4.6613 9.7706 -6.2713 21 1 2.3295 9.5339 -6.8944 22 1 3.1333 11.6304 -5.9785 23 6 4.4425 7.6783 -1.3234 24 6 4.0558 2.5026 -0.0053 25 6 3.4351 1.2691 -0.0004 26 17 4.3784 -0.1883 -0.0015 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.2356 4.3860 -0.0009 31 1 2.1189 6.0010 0.0012 32 1 4.0585 7.5205 2.1231 33 1 5.3894 6.8093 1.1791 34 1 5.1162 8.5680 1.1472 35 1 3.0022 9.4740 0.3666 36 1 1.7360 8.2209 0.5894 37 1 1.8311 9.5959 -1.7376 38 1 1.5468 7.8287 -1.7754 39 1 1.0123 10.2618 -4.1977 40 1 4.7103 6.7289 -1.7871 41 1 5.3402 8.2666 -1.1334 42 1 5.1330 2.5802 -0.0099 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046854813.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:39 Heat of formation + Delta-G solvation = -27.557555 kcal Electronic energy + Delta-G solvation = -27197.632473 eV Core-core repulsion = 23204.403773 eV Total energy + Delta-G solvation = -3993.228701 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.17045 -41.11717 -39.33345 -38.53618 -37.73485 -35.77821 -33.90347 -33.64585 -32.34947 -31.14227 -30.29392 -28.40397 -27.52680 -25.76089 -25.23196 -24.58825 -22.47651 -22.05133 -20.58157 -19.80903 -19.19353 -18.68959 -18.43628 -17.32325 -17.07067 -16.66429 -16.59869 -16.09821 -15.71346 -15.57962 -15.39252 -15.08180 -14.75235 -14.55535 -14.31346 -14.13799 -14.02340 -13.57190 -13.27784 -13.20577 -13.09405 -12.87783 -12.83214 -12.76960 -12.28306 -12.25564 -12.05217 -12.02437 -11.94318 -11.71082 -11.62419 -11.20866 -10.99538 -10.74039 -10.65858 -10.10961 -9.67095 -8.86333 -7.77892 -5.20408 -0.59867 -0.24902 0.84476 1.46223 1.46631 1.56913 1.65869 1.77323 2.05819 2.49054 2.53127 2.96358 3.31593 3.38549 3.58957 3.63626 3.73760 3.77838 3.85786 4.04167 4.20014 4.31252 4.42590 4.44883 4.66486 4.68307 4.71094 4.74141 4.82656 4.89570 4.92811 4.94247 5.05961 5.13280 5.38641 5.45244 5.61912 5.68555 5.83136 5.86977 6.33363 6.34021 6.53150 7.12480 7.17844 7.79225 8.41967 9.23599 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013911 B = 0.002850 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.307937 B = 9822.294952 C =10304.809923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.300 6.300 3 C 0.350 3.650 4 N -0.530 5.530 5 C 0.194 3.806 6 C -0.218 4.218 7 C 0.570 3.430 8 O -0.562 6.562 9 N -0.695 5.695 10 C 0.172 3.828 11 C -0.144 4.144 12 C -0.127 4.127 13 C 0.154 3.846 14 N -0.623 5.623 15 C -0.240 4.240 16 H 0.069 0.931 17 C -0.059 4.059 18 N -0.942 5.942 19 Si 0.975 3.025 20 H -0.274 1.274 21 H -0.291 1.291 22 H -0.288 1.288 23 C 0.136 3.864 24 C 0.025 3.975 25 C -0.126 4.126 26 Cl -0.032 7.032 27 H 0.062 0.938 28 H 0.128 0.872 29 H 0.067 0.933 30 H 0.196 0.804 31 H 0.410 0.590 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.105 0.895 37 H 0.075 0.925 38 H -0.003 1.003 39 H 0.248 0.752 40 H 0.007 0.993 41 H 0.023 0.977 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.324 -17.364 13.485 22.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.205 6.205 3 C 0.171 3.829 4 N -0.254 5.254 5 C 0.036 3.964 6 C -0.224 4.224 7 C 0.358 3.642 8 O -0.442 6.442 9 N -0.347 5.347 10 C 0.085 3.915 11 C -0.202 4.202 12 C -0.166 4.166 13 C 0.029 3.971 14 N -0.349 5.349 15 C -0.369 4.369 16 H 0.087 0.913 17 C -0.252 4.252 18 N -0.592 5.592 19 Si 0.803 3.197 20 H -0.199 1.199 21 H -0.218 1.218 22 H -0.214 1.214 23 C 0.010 3.990 24 C -0.002 4.002 25 C -0.156 4.156 26 Cl -0.003 7.003 27 H 0.081 0.919 28 H 0.146 0.854 29 H 0.086 0.914 30 H 0.213 0.787 31 H 0.247 0.753 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.015 0.985 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.041 0.959 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -3.288 -17.680 13.319 22.378 hybrid contribution 0.550 0.361 -1.401 1.548 sum -2.738 -17.319 11.918 21.201 Atomic orbital electron populations 1.23265 0.74613 1.05401 1.03074 1.86298 1.25285 1.22920 1.85999 1.19896 0.87879 0.86147 0.89027 1.67596 1.38940 0.98288 1.20572 1.23145 0.91401 0.94741 0.87139 1.20711 0.95230 0.93697 1.12742 1.17929 0.86399 0.84051 0.75848 1.90743 1.15006 1.87165 1.51252 1.45771 1.10364 1.04674 1.73848 1.21204 0.94276 0.81764 0.94245 1.22000 0.99382 1.02753 0.96074 1.23222 0.98066 0.97572 0.97724 1.21776 0.86631 1.00663 0.88028 1.44787 1.12188 1.64161 1.13806 1.19383 0.98163 1.28669 0.90655 0.91311 1.25492 0.95966 1.01616 1.02163 1.70009 1.05006 1.46886 1.37264 0.85066 0.77354 0.77522 0.79723 1.19883 1.21818 1.21433 1.21697 0.92967 0.93578 0.90767 1.21530 1.02181 0.88239 0.88202 1.20731 0.89678 0.90217 1.14974 1.98382 1.71146 1.33739 1.97081 0.91934 0.85424 0.91396 0.78724 0.75269 0.90221 0.91745 0.91360 0.89753 0.87701 0.90723 0.98528 0.94216 0.97461 0.95888 0.81791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.37 113.37 1.18 1.56 16 2 O -0.30 -5.81 9.93 -88.31 -0.88 -6.69 16 3 C 0.35 7.68 7.49 84.85 0.64 8.32 16 4 N -0.53 -11.23 9.18 -307.72 -2.82 -14.05 16 5 C 0.19 3.91 10.71 85.04 0.91 4.82 16 6 C -0.22 -5.25 5.89 -20.00 -0.12 -5.37 16 7 C 0.57 16.77 6.98 86.72 0.61 17.38 16 8 O -0.56 -20.12 13.39 -3.99 -0.05 -20.18 16 9 N -0.69 -19.22 5.09 -420.58 -2.14 -21.36 16 10 C 0.17 5.55 0.81 4.80 0.00 5.55 16 11 C -0.14 -3.99 8.44 71.98 0.61 -3.39 16 12 C -0.13 -4.07 6.07 31.98 0.19 -3.88 16 13 C 0.15 6.99 5.85 86.85 0.51 7.50 16 14 N -0.62 -31.95 3.39 -691.97 -2.35 -34.30 16 15 C -0.24 -13.65 10.27 84.03 0.86 -12.79 16 16 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 17 C -0.06 -3.35 5.49 84.86 0.47 -2.88 16 18 N -0.94 -54.37 10.09 21.65 0.22 -54.16 16 19 Si 0.97 45.81 29.55 68.60 2.03 47.84 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 22 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 23 C 0.14 5.94 6.19 86.73 0.54 6.48 16 24 C 0.02 0.58 9.50 22.72 0.22 0.79 16 25 C -0.13 -2.82 6.35 22.47 0.14 -2.68 16 26 Cl -0.03 -0.66 28.52 -2.72 -0.08 -0.74 16 27 H 0.06 0.83 8.10 -2.39 -0.02 0.81 16 28 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.07 0.81 8.10 -2.39 -0.02 0.79 16 30 H 0.20 2.83 6.41 -2.91 -0.02 2.82 16 31 H 0.41 8.97 6.54 -92.70 -0.61 8.36 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 2.00 5.97 -2.39 -0.01 1.99 16 34 H 0.07 1.85 8.07 -2.39 -0.02 1.83 16 35 H 0.08 2.65 8.05 -2.39 -0.02 2.63 16 36 H 0.10 2.53 8.07 -2.39 -0.02 2.51 16 37 H 0.07 3.93 5.89 -2.38 -0.01 3.91 16 38 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 40 H 0.01 0.35 6.90 -2.38 -0.02 0.34 16 41 H 0.02 1.03 7.77 -2.39 -0.02 1.02 16 42 H 0.16 3.80 7.73 -2.91 -0.02 3.77 16 Total: -1.00 -70.43 359.05 1.13 -69.29 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.46 Total: 12.93 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 6.75 Total: 21.42 kcal Atomic # 7 Polarization: -116.77 SS G_CDS: -7.10 Total: -123.87 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.93 Total: -26.87 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.08 Total: -0.74 kcal Total: -70.43 1.13 -69.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046854813.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.733 kcal (2) G-P(sol) polarization free energy of solvation -70.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds