Wall clock time and date at job start Tue Mar 31 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47182 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46868 * 119.99586 * 3 2 1 6 6 H 1.48499 * 109.47144 * 239.99495 * 3 2 1 7 7 C 1.38817 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99543 * 171.62851 * 7 2 1 9 9 N 1.36933 * 119.99939 * 351.63272 * 7 2 1 10 10 C 1.48293 * 128.21290 * 344.80809 * 9 7 2 11 11 H 1.09005 * 112.20618 * 343.85960 * 10 9 7 12 12 C 1.54602 * 104.26381 * 221.59972 * 10 9 7 13 13 C 1.54821 * 104.65386 * 334.74523 * 12 10 9 14 14 C 1.48301 * 128.20937 * 164.49214 * 9 7 2 15 15 H 1.08997 * 112.20665 * 16.13963 * 14 9 7 16 16 C 1.53157 * 107.55682 * 252.69415 * 14 9 7 17 17 C 1.53152 * 108.90792 * 296.11136 * 16 14 9 18 18 H 1.08997 * 109.39349 * 173.84705 * 17 16 14 19 19 C 1.53004 * 109.43478 * 293.73573 * 17 16 14 20 20 N 1.46493 * 109.46874 * 180.18427 * 19 17 16 21 21 C 1.34776 * 120.00062 * 180.02562 * 20 19 17 22 22 O 1.21582 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.47516 * 120.00322 * 180.02562 * 21 20 19 24 24 C 1.36786 * 126.93043 * 179.97438 * 23 21 20 25 25 C 1.41410 * 103.83723 * 179.97438 * 24 23 21 26 26 Cl 1.73605 * 126.72460 * 180.02562 * 25 24 23 27 27 N 1.30224 * 106.55073 * 359.97438 * 25 24 23 28 28 O 1.20882 * 111.96232 * 359.72501 * 27 25 24 29 29 C 1.53146 * 109.68881 * 53.80509 * 17 16 14 30 30 H 0.96999 * 119.99411 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.38351 * 93.68050 * 12 10 9 32 32 H 1.09001 * 110.38567 * 216.04107 * 12 10 9 33 33 H 1.08995 * 110.33754 * 241.26351 * 13 12 10 34 34 H 1.09003 * 110.52611 * 118.83168 * 13 12 10 35 35 H 1.08999 * 109.62458 * 176.24187 * 16 14 9 36 36 H 1.08992 * 109.57944 * 55.95971 * 16 14 9 37 37 H 1.09000 * 109.47249 * 300.18553 * 19 17 16 38 38 H 1.08995 * 109.47077 * 60.18284 * 19 17 16 39 39 H 0.97005 * 120.00375 * 0.02562 * 20 19 17 40 40 H 1.07998 * 128.08353 * 359.97349 * 24 23 21 41 41 H 1.09001 * 109.56536 * 186.28933 * 29 17 16 42 42 H 1.08994 * 109.66835 * 65.98298 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1042 1.6962 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0816 -1.2073 -0.1356 9 7 1.3365 -2.3817 0.1736 10 6 -0.0450 -2.5841 0.6732 11 1 -0.4352 -1.6990 1.1757 12 6 0.0657 -3.8048 1.6155 13 6 1.3001 -4.5854 1.1018 14 6 1.8130 -3.7591 -0.1001 15 1 2.8963 -3.8058 -0.2109 16 6 1.0892 -4.2577 -1.3544 17 6 -0.4116 -4.3419 -1.0608 18 1 -0.9463 -4.5902 -1.9776 19 6 -0.6653 -5.4278 -0.0133 20 7 -2.1011 -5.5120 0.2648 21 6 -2.5625 -6.4052 1.1624 22 8 -1.7869 -7.1409 1.7417 23 6 -4.0084 -6.4904 1.4421 24 6 -4.6273 -7.3386 2.3187 25 6 -5.9969 -7.0071 2.2002 26 17 -7.3188 -7.7323 3.0607 27 7 -6.0722 -6.0506 1.3198 28 8 -4.9843 -5.7442 0.8909 29 6 -0.9097 -2.9947 -0.5294 30 1 -0.4849 0.8401 -0.0004 31 1 0.2210 -3.4778 2.6437 32 1 -0.8297 -4.4223 1.5438 33 1 1.0087 -5.5848 0.7786 34 1 2.0649 -4.6438 1.8763 35 1 1.4641 -5.2446 -1.6254 36 1 1.2621 -3.5631 -2.1763 37 1 -0.3116 -6.3870 -0.3912 38 1 -0.1315 -5.1796 0.9040 39 1 -2.7199 -4.9248 -0.1970 40 1 -4.1756 -8.0867 2.9532 41 1 -1.9497 -3.0878 -0.2165 42 1 -0.8298 -2.2396 -1.3113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001048584615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:18 Heat of formation + Delta-G solvation = 148.098503 kcal Electronic energy + Delta-G solvation = -28113.506120 eV Core-core repulsion = 24127.894437 eV Total energy + Delta-G solvation = -3985.611683 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -45.49810 -41.36975 -39.16461 -37.50885 -35.03857 -34.03054 -33.10298 -32.31284 -31.46013 -30.38874 -29.98939 -26.97858 -24.60165 -23.95962 -23.31426 -23.25777 -21.19966 -20.71967 -19.56774 -19.29093 -18.50382 -18.27445 -17.09336 -16.71013 -16.29712 -15.62597 -15.26872 -14.89600 -14.49770 -14.17849 -14.04909 -13.62749 -13.11899 -13.09405 -12.88312 -12.75971 -12.69070 -12.07316 -11.78657 -11.50817 -11.48217 -11.45400 -11.33122 -10.85457 -10.78449 -10.62872 -10.50837 -10.44036 -10.17921 -10.15451 -9.84843 -9.66533 -9.54847 -9.41640 -9.27312 -8.67276 -8.28626 -6.83063 -5.78908 -3.13818 0.42095 1.04715 1.43997 2.27203 2.82088 3.10539 3.37412 3.43182 3.43250 3.88926 4.33290 4.44907 4.60545 4.71448 5.16648 5.21649 5.30034 5.39767 5.41039 5.53236 5.66341 5.76143 5.86361 5.96983 6.01634 6.07285 6.19284 6.30464 6.33600 6.42739 6.56800 6.62388 6.67867 6.78235 6.88693 7.01401 7.05898 7.23774 7.52143 7.54518 7.56919 7.73749 7.91828 8.22162 9.11748 9.73777 10.52606 11.33094 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002752 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.754673 B =10173.250490 C =10939.550290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.005 4.005 3 Si 0.909 3.091 4 H -0.291 1.291 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.223 4.223 8 H 0.074 0.926 9 N -0.583 5.583 10 C 0.182 3.818 11 H 0.111 0.889 12 C -0.174 4.174 13 C -0.161 4.161 14 C 0.148 3.852 15 H 0.067 0.933 16 C -0.121 4.121 17 C -0.088 4.088 18 H 0.053 0.947 19 C 0.000 4.000 20 N -0.697 5.697 21 C 0.596 3.404 22 O -0.512 6.512 23 C -0.061 4.061 24 C -0.143 4.143 25 C 0.050 3.950 26 Cl 0.030 6.970 27 N -0.328 5.328 28 O 0.138 5.862 29 C -0.113 4.113 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.200 0.800 39 H 0.404 0.596 40 H 0.194 0.806 41 H 0.037 0.963 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.180 -14.864 2.497 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.202 4.202 3 Si 0.740 3.260 4 H -0.217 1.217 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.351 4.351 8 H 0.092 0.908 9 N -0.304 5.304 10 C 0.075 3.925 11 H 0.129 0.871 12 C -0.213 4.213 13 C -0.200 4.200 14 C 0.040 3.960 15 H 0.086 0.914 16 C -0.161 4.161 17 C -0.107 4.107 18 H 0.072 0.928 19 C -0.117 4.117 20 N -0.347 5.347 21 C 0.378 3.622 22 O -0.389 6.389 23 C -0.127 4.127 24 C -0.166 4.166 25 C -0.133 4.133 26 Cl 0.058 6.942 27 N -0.028 5.028 28 O 0.061 5.939 29 C -0.152 4.152 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.076 0.924 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.215 0.785 39 H 0.240 0.760 40 H 0.211 0.789 41 H 0.056 0.944 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.757 -14.459 2.442 17.613 hybrid contribution 0.128 0.487 -0.027 0.504 sum -9.629 -13.972 2.416 17.140 Atomic orbital electron populations 1.69832 1.04848 1.25240 1.55956 1.24823 0.95621 0.97665 1.02049 0.86247 0.78572 0.83300 0.77897 1.21679 1.21248 1.21202 1.18941 0.90602 0.82427 1.43163 0.90820 1.45158 1.12196 0.99562 1.73467 1.21494 0.85784 0.94494 0.90774 0.87089 1.23641 0.97380 0.99767 1.00478 1.23459 0.97776 0.99162 0.99566 1.21447 0.96438 0.86811 0.91336 0.91444 1.22042 0.94114 0.99532 1.00421 1.21293 0.97483 0.95605 0.96307 0.92818 1.25452 0.79035 0.98900 1.08355 1.46309 1.11260 1.36500 1.40602 1.16424 0.82650 0.81932 0.81188 1.90881 1.54153 1.43031 1.50814 1.24468 0.92542 0.96275 0.99386 1.22724 0.90060 1.02485 1.01318 1.24064 0.91247 0.98422 0.99543 1.98424 1.43605 1.79587 1.72556 1.73876 1.03176 1.14156 1.11564 1.85085 1.09952 1.47770 1.51065 1.22096 0.97068 0.94622 1.01439 0.93672 0.92883 0.89377 0.89273 0.92406 0.93485 0.91456 0.92698 0.78482 0.76019 0.78869 0.94398 0.90453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -24.75 10.59 55.49 0.59 -24.16 16 2 C 0.00 -0.12 5.43 -17.43 -0.09 -0.22 16 3 Si 0.91 21.19 29.56 -169.99 -5.03 16.16 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.22 -5.80 10.38 -15.06 -0.16 -5.96 16 8 H 0.07 1.88 7.84 -52.49 -0.41 1.47 16 9 N -0.58 -13.45 2.83 -153.07 -0.43 -13.88 16 10 C 0.18 3.86 3.16 -65.73 -0.21 3.65 16 11 H 0.11 2.78 6.28 -51.93 -0.33 2.45 16 12 C -0.17 -3.10 5.74 -24.93 -0.14 -3.24 16 13 C -0.16 -2.67 5.74 -24.93 -0.14 -2.81 16 14 C 0.15 2.77 4.29 -66.01 -0.28 2.49 16 15 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 16 C -0.12 -2.02 5.35 -26.57 -0.14 -2.17 16 17 C -0.09 -1.38 2.76 -90.46 -0.25 -1.63 16 18 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 19 C 0.00 0.01 2.68 -4.04 -0.01 0.00 16 20 N -0.70 -8.80 4.37 -61.36 -0.27 -9.07 16 21 C 0.60 7.75 7.57 -12.48 -0.09 7.66 16 22 O -0.51 -7.90 16.91 5.29 0.09 -7.81 16 23 C -0.06 -0.69 7.29 -36.33 -0.26 -0.96 16 24 C -0.14 -1.45 10.96 -38.90 -0.43 -1.88 16 25 C 0.05 0.54 7.97 -17.03 -0.14 0.40 16 26 Cl 0.03 0.27 29.33 -51.86 -1.52 -1.25 16 27 N -0.33 -3.98 12.05 32.82 0.40 -3.59 16 28 O 0.14 1.61 11.04 15.52 0.17 1.78 16 29 C -0.11 -2.12 5.20 -26.29 -0.14 -2.26 16 30 H 0.25 6.79 8.31 -40.82 -0.34 6.46 16 31 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 1.42 3.94 -51.93 -0.20 1.22 16 33 H 0.09 1.31 4.83 -51.93 -0.25 1.06 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.76 8.00 -51.93 -0.42 0.34 16 38 H 0.20 3.02 1.12 -165.72 -0.19 2.83 16 39 H 0.40 4.60 7.14 -40.82 -0.29 4.31 16 40 H 0.19 1.56 8.06 -52.49 -0.42 1.14 16 41 H 0.04 0.63 6.71 -51.93 -0.35 0.29 16 42 H 0.08 1.74 8.03 -51.93 -0.42 1.32 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -28.02 341.65 -8.29 -36.31 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.95 Total: 7.27 kcal Atomic # 6 Polarization: -4.42 SS G_CDS: -2.49 Total: -6.91 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: 0.28 Total: -50.70 kcal Atomic # 8 Polarization: -6.29 SS G_CDS: 0.26 Total: -6.03 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Atomic # 17 Polarization: 0.27 SS G_CDS: -1.52 Total: -1.25 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.02 -8.29 -36.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048584615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.412 kcal (2) G-P(sol) polarization free energy of solvation -28.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds