Wall clock time and date at job start Tue Mar 31 2020 22:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48497 * 109.47182 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.46868 * 119.99586 * 3 2 1 6 6 H 1.48499 * 109.47144 * 239.99495 * 3 2 1 7 7 C 1.38817 * 119.99649 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99543 * 171.62851 * 7 2 1 9 9 N 1.36933 * 119.99939 * 351.63272 * 7 2 1 10 10 C 1.48293 * 128.21290 * 344.80809 * 9 7 2 11 11 H 1.09005 * 112.20618 * 343.85960 * 10 9 7 12 12 C 1.54602 * 104.26381 * 221.59972 * 10 9 7 13 13 C 1.54821 * 104.65386 * 334.74523 * 12 10 9 14 14 C 1.48301 * 128.20937 * 164.49214 * 9 7 2 15 15 H 1.08997 * 112.20665 * 16.13963 * 14 9 7 16 16 C 1.53157 * 107.55682 * 252.69415 * 14 9 7 17 17 C 1.53152 * 108.90792 * 296.11136 * 16 14 9 18 18 H 1.08997 * 109.39349 * 173.84705 * 17 16 14 19 19 C 1.53004 * 109.43478 * 293.73573 * 17 16 14 20 20 N 1.46493 * 109.46874 * 180.18427 * 19 17 16 21 21 C 1.34776 * 120.00062 * 180.02562 * 20 19 17 22 22 O 1.21582 * 119.99994 * 0.02562 * 21 20 19 23 23 C 1.47516 * 120.00322 * 180.02562 * 21 20 19 24 24 C 1.36786 * 126.93043 * 179.97438 * 23 21 20 25 25 C 1.41410 * 103.83723 * 179.97438 * 24 23 21 26 26 Cl 1.73605 * 126.72460 * 180.02562 * 25 24 23 27 27 N 1.30224 * 106.55073 * 359.97438 * 25 24 23 28 28 O 1.20882 * 111.96232 * 359.72501 * 27 25 24 29 29 C 1.53146 * 109.68881 * 53.80509 * 17 16 14 30 30 H 0.96999 * 119.99411 * 0.02562 * 1 2 3 31 31 H 1.09003 * 110.38351 * 93.68050 * 12 10 9 32 32 H 1.09001 * 110.38567 * 216.04107 * 12 10 9 33 33 H 1.08995 * 110.33754 * 241.26351 * 13 12 10 34 34 H 1.09003 * 110.52611 * 118.83168 * 13 12 10 35 35 H 1.08999 * 109.62458 * 176.24187 * 16 14 9 36 36 H 1.08992 * 109.57944 * 55.95971 * 16 14 9 37 37 H 1.09000 * 109.47249 * 300.18553 * 19 17 16 38 38 H 1.08995 * 109.47077 * 60.18284 * 19 17 16 39 39 H 0.97005 * 120.00375 * 0.02562 * 20 19 17 40 40 H 1.07998 * 128.08353 * 359.97349 * 24 23 21 41 41 H 1.09001 * 109.56536 * 186.28933 * 29 17 16 42 42 H 1.08994 * 109.66835 * 65.98298 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2854 2.7464 -0.0006 5 1 3.1040 1.6963 1.2126 6 1 3.1042 1.6962 -1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0816 -1.2073 -0.1356 9 7 1.3365 -2.3817 0.1736 10 6 -0.0450 -2.5841 0.6732 11 1 -0.4352 -1.6990 1.1757 12 6 0.0657 -3.8048 1.6155 13 6 1.3001 -4.5854 1.1018 14 6 1.8130 -3.7591 -0.1001 15 1 2.8963 -3.8058 -0.2109 16 6 1.0892 -4.2577 -1.3544 17 6 -0.4116 -4.3419 -1.0608 18 1 -0.9463 -4.5902 -1.9776 19 6 -0.6653 -5.4278 -0.0133 20 7 -2.1011 -5.5120 0.2648 21 6 -2.5625 -6.4052 1.1624 22 8 -1.7869 -7.1409 1.7417 23 6 -4.0084 -6.4904 1.4421 24 6 -4.6273 -7.3386 2.3187 25 6 -5.9969 -7.0071 2.2002 26 17 -7.3188 -7.7323 3.0607 27 7 -6.0722 -6.0506 1.3198 28 8 -4.9843 -5.7442 0.8909 29 6 -0.9097 -2.9947 -0.5294 30 1 -0.4849 0.8401 -0.0004 31 1 0.2210 -3.4778 2.6437 32 1 -0.8297 -4.4223 1.5438 33 1 1.0087 -5.5848 0.7786 34 1 2.0649 -4.6438 1.8763 35 1 1.4641 -5.2446 -1.6254 36 1 1.2621 -3.5631 -2.1763 37 1 -0.3116 -6.3870 -0.3912 38 1 -0.1315 -5.1796 0.9040 39 1 -2.7199 -4.9248 -0.1970 40 1 -4.1756 -8.0867 2.9532 41 1 -1.9497 -3.0878 -0.2165 42 1 -0.8298 -2.2396 -1.3113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001048584615.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:17 Heat of formation + Delta-G solvation = 131.831379 kcal Electronic energy + Delta-G solvation = -28114.211515 eV Core-core repulsion = 24127.894437 eV Total energy + Delta-G solvation = -3986.317078 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -46.35955 -42.72140 -40.30339 -38.26213 -36.32818 -34.96256 -34.62591 -33.38631 -32.80718 -31.90343 -31.63089 -28.45502 -25.97180 -24.82014 -24.77333 -24.59694 -22.29743 -22.00060 -21.03360 -20.60551 -19.78746 -19.15891 -18.66863 -17.81272 -17.39576 -16.73992 -16.65845 -16.25995 -15.98417 -15.42046 -14.96049 -14.85767 -14.50251 -14.47661 -14.14295 -13.87892 -13.68817 -13.58175 -13.26612 -13.09159 -12.97086 -12.91577 -12.60555 -12.41969 -12.30442 -12.23168 -11.99200 -11.64325 -11.24879 -11.23171 -11.16132 -11.05668 -11.00239 -10.95822 -10.76488 -10.44918 -9.52287 -8.66952 -7.78167 -5.11813 -0.46309 0.26507 0.61332 1.36761 1.48856 1.50197 1.55926 1.84180 2.14439 2.54146 3.03151 3.38252 3.51799 3.65877 3.73697 3.82077 3.98804 4.02897 4.06494 4.30402 4.33456 4.46092 4.57353 4.59813 4.66661 4.77548 4.83276 4.95253 4.99601 5.08717 5.17952 5.22021 5.33634 5.39098 5.44824 5.56778 5.59454 5.65764 5.87355 5.97854 6.25834 6.35354 6.66825 6.91418 7.16581 7.83503 8.63933 9.31788 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019899 B = 0.002752 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1406.754673 B =10173.250490 C =10939.550290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.058 4.058 3 Si 0.965 3.035 4 H -0.298 1.298 5 H -0.284 1.284 6 H -0.281 1.281 7 C -0.230 4.230 8 H 0.072 0.928 9 N -0.607 5.607 10 C 0.174 3.826 11 H 0.065 0.935 12 C -0.164 4.164 13 C -0.150 4.150 14 C 0.138 3.862 15 H 0.067 0.933 16 C -0.116 4.116 17 C -0.078 4.078 18 H 0.073 0.927 19 C 0.010 3.990 20 N -0.694 5.694 21 C 0.604 3.396 22 O -0.534 6.534 23 C -0.070 4.070 24 C -0.129 4.129 25 C 0.047 3.953 26 Cl 0.046 6.954 27 N -0.346 5.346 28 O 0.136 5.864 29 C -0.102 4.102 30 H 0.244 0.756 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.041 0.959 37 H 0.074 0.926 38 H 0.189 0.811 39 H 0.411 0.589 40 H 0.215 0.785 41 H 0.054 0.946 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.406 -17.446 2.672 19.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.252 4.252 3 Si 0.795 3.205 4 H -0.224 1.224 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.360 4.360 8 H 0.090 0.910 9 N -0.329 5.329 10 C 0.067 3.933 11 H 0.083 0.917 12 C -0.203 4.203 13 C -0.188 4.188 14 C 0.031 3.969 15 H 0.085 0.915 16 C -0.156 4.156 17 C -0.097 4.097 18 H 0.091 0.909 19 C -0.109 4.109 20 N -0.345 5.345 21 C 0.387 3.613 22 O -0.412 6.412 23 C -0.136 4.136 24 C -0.152 4.152 25 C -0.136 4.136 26 Cl 0.074 6.926 27 N -0.047 5.047 28 O 0.059 5.941 29 C -0.142 4.142 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.204 0.796 39 H 0.248 0.752 40 H 0.232 0.768 41 H 0.072 0.928 42 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -9.980 -17.067 2.611 19.942 hybrid contribution 0.164 1.252 -0.051 1.263 sum -9.815 -15.815 2.560 18.789 Atomic orbital electron populations 1.70028 1.05767 1.24882 1.57392 1.25475 0.96404 1.00253 1.03072 0.85355 0.77294 0.80001 0.77833 1.22417 1.21057 1.20725 1.19225 0.90887 0.83995 1.41864 0.91013 1.45368 1.12954 1.00468 1.74090 1.21409 0.85427 0.94316 0.92147 0.91678 1.23592 0.99154 0.98619 0.98896 1.23422 0.96972 0.99852 0.98508 1.21715 0.96843 0.84966 0.93351 0.91474 1.21953 0.94638 1.00668 0.98325 1.21171 0.96891 0.94046 0.97563 0.90883 1.25122 0.79861 0.98884 1.06998 1.46204 1.10848 1.36682 1.40744 1.16418 0.83007 0.81319 0.80573 1.90874 1.54916 1.43856 1.51585 1.24236 0.91970 0.97088 1.00278 1.23021 0.89622 1.02006 1.00520 1.24267 0.92076 0.98022 0.99199 1.98433 1.42916 1.79199 1.72075 1.73861 1.03452 1.14978 1.12368 1.85072 1.09862 1.47912 1.51212 1.21872 0.97790 0.95400 0.99122 0.94675 0.93935 0.87299 0.86223 0.91976 0.89763 0.94052 0.90798 0.79624 0.75223 0.76778 0.92781 0.94855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.91 10.59 21.65 0.23 -52.68 16 2 C -0.06 -3.16 5.43 84.86 0.46 -2.70 16 3 Si 0.97 44.84 29.56 68.60 2.03 46.87 16 4 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 5 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 6 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 7 C -0.23 -12.30 10.38 84.04 0.87 -11.43 16 8 H 0.07 3.74 7.84 -2.91 -0.02 3.72 16 9 N -0.61 -28.48 2.83 -638.19 -1.80 -30.28 16 10 C 0.17 7.53 3.16 45.43 0.14 7.67 16 11 H 0.07 3.43 6.28 -2.38 -0.01 3.41 16 12 C -0.16 -5.68 5.74 31.76 0.18 -5.50 16 13 C -0.15 -4.59 5.74 31.76 0.18 -4.41 16 14 C 0.14 5.01 4.29 45.25 0.19 5.21 16 15 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 16 C -0.12 -3.65 5.35 30.70 0.16 -3.48 16 17 C -0.08 -2.27 2.76 -10.69 -0.03 -2.30 16 18 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 19 C 0.01 0.24 2.68 86.38 0.23 0.48 16 20 N -0.69 -15.58 4.37 -466.31 -2.04 -17.62 16 21 C 0.60 14.04 7.57 86.69 0.66 14.69 16 22 O -0.53 -14.81 16.91 -3.97 -0.07 -14.88 16 23 C -0.07 -1.44 7.29 24.38 0.18 -1.26 16 24 C -0.13 -2.30 10.96 22.71 0.25 -2.05 16 25 C 0.05 0.92 7.97 85.71 0.68 1.60 16 26 Cl 0.05 0.73 29.33 -2.72 -0.08 0.65 16 27 N -0.35 -7.87 12.05 -51.02 -0.61 -8.48 16 28 O 0.14 2.94 11.04 65.72 0.73 3.67 16 29 C -0.10 -3.86 5.20 30.88 0.16 -3.70 16 30 H 0.24 13.73 8.31 -92.71 -0.77 12.96 16 31 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.11 3.30 3.94 -2.39 -0.01 3.29 16 33 H 0.12 3.01 4.83 -2.39 -0.01 3.00 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.07 1.66 8.00 -2.39 -0.02 1.64 16 38 H 0.19 5.09 1.12 -109.27 -0.12 4.96 16 39 H 0.41 8.35 7.14 -92.70 -0.66 7.69 16 40 H 0.22 2.78 8.06 -2.91 -0.02 2.76 16 41 H 0.05 1.80 6.71 -2.39 -0.02 1.79 16 42 H 0.03 1.54 8.03 -2.39 -0.02 1.52 16 Total: -1.00 -62.60 341.65 3.02 -59.58 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.31 Total: 20.33 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: 4.33 Total: -7.16 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -4.23 Total: -109.06 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.66 Total: -11.21 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Atomic # 17 Polarization: 0.73 SS G_CDS: -0.08 Total: 0.65 kcal Total: -62.60 3.02 -59.58 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001048584615.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.413 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds