Wall clock time and date at job start Tue Mar 31 2020 22:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38507 * 120.86520 * 2 1 4 4 Cl 1.73601 * 120.35794 * 0.02562 * 3 2 1 5 5 C 1.38423 * 119.28255 * 180.27617 * 3 2 1 6 6 N 1.31950 * 121.06187 * 359.69610 * 5 3 2 7 7 C 1.31667 * 121.89181 * 0.02704 * 6 5 3 8 8 C 1.39562 * 120.59379 * 359.97438 * 7 6 5 9 9 C 1.47848 * 120.55168 * 179.97438 * 8 7 6 10 10 O 1.21551 * 119.99740 * 182.86707 * 9 8 7 11 11 N 1.34773 * 119.99800 * 2.86208 * 9 8 7 12 12 C 1.46504 * 119.99749 * 179.97438 * 11 9 8 13 13 C 1.52995 * 109.47154 * 180.02562 * 12 11 9 14 14 H 1.08995 * 109.68012 * 299.37209 * 13 12 11 15 15 C 1.53294 * 109.71305 * 178.83539 * 13 12 11 16 16 O 1.42960 * 109.22597 * 187.95744 * 15 13 12 17 17 C 1.42963 * 114.16769 * 62.57650 * 16 15 13 18 18 C 1.53294 * 109.22385 * 297.42289 * 17 16 15 19 19 N 1.47149 * 108.38307 * 52.30289 * 18 17 16 20 20 C 1.36937 * 120.98451 * 129.73960 * 19 18 17 21 21 H 1.08002 * 120.00137 * 210.78704 * 20 19 18 22 22 C 1.38812 * 119.99975 * 30.77971 * 20 19 18 23 23 N 1.31617 * 120.00132 * 9.82287 * 22 20 19 24 24 Si 1.86807 * 119.99982 * 189.81865 * 22 20 19 25 25 H 1.48493 * 109.47079 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46864 * 120.00720 * 24 22 20 27 27 H 1.48505 * 109.46619 * 240.00435 * 24 22 20 28 28 H 1.08997 * 109.46995 * 263.85156 * 1 2 3 29 29 H 1.08997 * 109.46915 * 23.84983 * 1 2 3 30 30 H 1.08999 * 109.46982 * 143.85413 * 1 2 3 31 31 H 1.07994 * 119.47664 * 179.72415 * 5 3 2 32 32 H 1.07998 * 119.70192 * 179.97438 * 7 6 5 33 33 H 0.97001 * 120.00582 * 0.02562 * 11 9 8 34 34 H 1.08996 * 109.47005 * 60.00142 * 12 11 9 35 35 H 1.09004 * 109.47054 * 300.00092 * 12 11 9 36 36 H 1.08999 * 109.51182 * 307.88043 * 15 13 12 37 37 H 1.08997 * 109.51268 * 68.03330 * 15 13 12 38 38 H 1.09007 * 109.51136 * 57.34843 * 17 16 15 39 39 H 1.09002 * 109.51457 * 177.49836 * 17 16 15 40 40 H 1.08997 * 109.68624 * 292.57386 * 18 17 16 41 41 H 1.09008 * 109.68036 * 172.01936 * 18 17 16 42 42 H 0.97001 * 120.00033 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2176 1.1889 0.0000 4 17 1.3819 2.7105 0.0007 5 6 3.6013 1.1507 -0.0058 6 7 4.2506 0.0020 -0.0054 7 6 3.6198 -1.1537 0.0001 8 6 2.2250 -1.2015 0.0062 9 6 1.5176 -2.4998 0.0117 10 8 0.3034 -2.5304 -0.0357 11 7 2.2191 -3.6491 0.0692 12 6 1.5180 -4.9355 0.0753 13 6 2.5393 -6.0725 0.1456 14 1 3.1940 -6.0323 -0.7249 15 6 1.8106 -7.4207 0.1816 16 8 2.7579 -8.4613 0.4334 17 6 3.4180 -8.3587 1.6973 18 6 4.2291 -7.0586 1.7390 19 7 3.3395 -5.9447 1.3740 20 6 3.2629 -4.8199 2.1512 21 1 2.3394 -4.2625 2.2050 22 6 4.3722 -4.3961 2.8701 23 7 5.5455 -4.9542 2.6594 24 14 4.1999 -3.0337 4.1365 25 1 2.7877 -2.5772 4.1832 26 1 4.5986 -3.5461 5.4720 27 1 5.0765 -1.8953 3.7611 28 1 -0.3633 -0.1101 1.0217 29 1 -0.3633 0.9399 -0.4155 30 1 -0.3633 -0.8299 -0.6062 31 1 4.1584 2.0758 -0.0104 32 1 4.1868 -2.0728 -0.0001 33 1 3.1880 -3.6247 0.1073 34 1 0.9284 -5.0322 -0.8363 35 1 0.8585 -4.9859 0.9417 36 1 1.0629 -7.4093 0.9746 37 1 1.3228 -7.5966 -0.7772 38 1 2.6761 -8.3507 2.4959 39 1 4.0867 -9.2094 1.8290 40 1 5.0540 -7.1175 1.0289 41 1 4.6200 -6.9018 2.7444 42 1 6.3207 -4.6578 3.1614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050963409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:28 Heat of formation + Delta-G solvation = -17.155484 kcal Electronic energy + Delta-G solvation = -28127.610249 eV Core-core repulsion = 24134.832616 eV Total energy + Delta-G solvation = -3992.777633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.73821 -39.09666 -38.27360 -36.80219 -35.55888 -33.97246 -33.48072 -32.12618 -31.01747 -30.37341 -28.06671 -27.27425 -25.73755 -24.13901 -23.52697 -22.44913 -21.65618 -20.40809 -19.72827 -17.84449 -17.08869 -16.63923 -16.26535 -15.98419 -15.72579 -15.26957 -15.04168 -14.85856 -14.62757 -14.26554 -13.94083 -13.68821 -13.51262 -13.05756 -13.00645 -12.84468 -12.77876 -12.61081 -12.15089 -12.03052 -11.90347 -11.63313 -11.31702 -11.11785 -10.97327 -10.81234 -10.47792 -10.29802 -10.13799 -9.95602 -9.72374 -9.57662 -9.30290 -9.06440 -9.01757 -8.77394 -8.41031 -6.82075 -5.99364 -3.49896 0.55080 0.95339 1.84983 2.99519 3.21998 3.32973 3.34037 3.49469 3.79517 4.25650 4.27763 4.47181 4.48816 4.62124 4.83084 5.04274 5.06758 5.17851 5.30817 5.47588 5.51334 5.64803 5.68480 5.74909 5.77792 5.93067 5.97937 6.01718 6.09511 6.14620 6.25539 6.28326 6.42396 6.46941 6.66739 6.91862 7.01911 7.44421 7.61449 7.70427 7.81128 7.97405 8.20364 8.55911 8.97120 9.57135 10.16225 11.06364 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003935 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.954398 B = 7113.887906 C = 8270.570952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.025 3.975 3 C -0.109 4.109 4 Cl -0.054 7.054 5 C 0.134 3.866 6 N -0.475 5.475 7 C 0.150 3.850 8 C -0.173 4.173 9 C 0.558 3.442 10 O -0.548 6.548 11 N -0.684 5.684 12 C 0.136 3.864 13 C 0.124 3.876 14 H 0.043 0.957 15 C 0.057 3.943 16 O -0.392 6.392 17 C 0.034 3.966 18 C 0.143 3.857 19 N -0.592 5.592 20 C -0.260 4.260 21 H 0.074 0.926 22 C 0.014 3.986 23 N -0.896 5.896 24 Si 0.887 3.113 25 H -0.277 1.277 26 H -0.286 1.286 27 H -0.284 1.284 28 H 0.084 0.916 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.167 0.833 32 H 0.173 0.827 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.047 0.953 37 H 0.083 0.917 38 H 0.040 0.960 39 H 0.080 0.920 40 H 0.030 0.970 41 H 0.094 0.906 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.698 6.928 -6.014 10.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.016 3.984 3 C -0.138 4.138 4 Cl -0.025 7.025 5 C -0.024 4.024 6 N -0.183 5.183 7 C -0.008 4.008 8 C -0.179 4.179 9 C 0.343 3.657 10 O -0.429 6.429 11 N -0.335 5.335 12 C 0.012 3.988 13 C 0.017 3.983 14 H 0.060 0.940 15 C -0.023 4.023 16 O -0.311 6.311 17 C -0.043 4.043 18 C 0.018 3.982 19 N -0.318 5.318 20 C -0.389 4.389 21 H 0.092 0.908 22 C -0.186 4.186 23 N -0.539 5.539 24 Si 0.716 3.284 25 H -0.202 1.202 26 H -0.212 1.212 27 H -0.211 1.211 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.184 0.816 32 H 0.190 0.810 33 H 0.255 0.745 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.048 0.952 41 H 0.112 0.888 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.491 6.898 -6.089 10.715 hybrid contribution -0.304 1.115 1.178 1.651 sum -5.795 8.013 -4.911 11.041 Atomic orbital electron populations 1.21238 0.88308 1.04455 1.04631 1.20346 0.98167 0.89757 0.90117 1.21899 0.93915 0.87724 1.10282 1.98355 1.78284 1.28864 1.97011 1.22976 0.89316 0.97426 0.92649 1.67896 1.39467 0.97775 1.13182 1.23331 0.90793 0.96913 0.89724 1.20953 0.94882 0.94440 1.07600 1.17783 0.86874 0.83443 0.77574 1.90652 1.13182 1.87145 1.51898 1.46000 1.11742 1.04732 1.71066 1.21231 0.94613 0.81799 1.01171 1.21445 0.92802 0.92456 0.91629 0.93984 1.22850 0.90896 0.88268 1.00249 1.87807 1.57018 1.48200 1.38029 1.23362 0.96003 1.00381 0.84593 1.21440 0.90848 0.83685 1.02214 1.44107 1.48999 1.16644 1.22062 1.19281 0.95328 1.02677 1.21647 0.90814 1.25114 0.94977 0.98180 1.00375 1.69961 0.98686 1.43330 1.41905 0.86441 0.77929 0.82112 0.81885 1.20180 1.21249 1.21063 0.89781 0.91431 0.87024 0.81619 0.81001 0.74507 0.91868 0.91140 0.93465 0.89867 0.94114 0.90213 0.95207 0.88779 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.75 8.70 36.01 0.31 -1.44 16 2 C 0.03 0.37 5.96 -103.87 -0.62 -0.25 16 3 C -0.11 -1.44 6.33 -39.41 -0.25 -1.69 16 4 Cl -0.05 -0.60 27.36 -51.86 -1.42 -2.01 16 5 C 0.13 1.77 10.97 -17.43 -0.19 1.58 16 6 N -0.47 -7.40 10.34 -12.88 -0.13 -7.54 16 7 C 0.15 2.41 10.71 -17.13 -0.18 2.22 16 8 C -0.17 -2.79 5.89 -104.82 -0.62 -3.41 16 9 C 0.56 9.74 7.76 -12.33 -0.10 9.64 16 10 O -0.55 -10.26 13.39 5.32 0.07 -10.19 16 11 N -0.68 -11.96 3.68 -61.25 -0.23 -12.18 16 12 C 0.14 2.31 4.46 -4.04 -0.02 2.29 16 13 C 0.12 2.26 3.22 -67.42 -0.22 2.04 16 14 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 15 C 0.06 0.94 6.29 37.31 0.23 1.18 16 16 O -0.39 -7.30 10.74 -35.23 -0.38 -7.68 16 17 C 0.03 0.64 6.98 37.31 0.26 0.90 16 18 C 0.14 3.12 5.37 -3.54 -0.02 3.11 16 19 N -0.59 -12.92 3.03 -164.30 -0.50 -13.42 16 20 C -0.26 -6.11 7.02 -15.06 -0.11 -6.22 16 21 H 0.07 1.77 5.78 -52.49 -0.30 1.47 16 22 C 0.01 0.34 5.08 -17.43 -0.09 0.25 16 23 N -0.90 -23.22 11.06 55.49 0.61 -22.60 16 24 Si 0.89 20.43 29.57 -169.99 -5.03 15.40 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.07 0.77 6.78 -51.93 -0.35 0.42 16 30 H 0.11 1.64 5.71 -51.93 -0.30 1.35 16 31 H 0.17 1.67 8.06 -52.49 -0.42 1.25 16 32 H 0.17 2.73 6.43 -52.49 -0.34 2.39 16 33 H 0.42 7.55 5.31 -40.82 -0.22 7.34 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 1.30 7.62 -51.93 -0.40 0.91 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 2.27 6.28 -51.92 -0.33 1.95 16 42 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -27.39 350.65 -8.48 -35.86 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.17 Total: 8.89 kcal Atomic # 6 Polarization: 11.80 SS G_CDS: -1.60 Total: 10.20 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.24 Total: -55.74 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: -0.31 Total: -17.88 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.03 Total: 15.40 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.42 Total: -2.01 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.39 -8.48 -35.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050963409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.705 kcal (2) G-P(sol) polarization free energy of solvation -27.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds