Wall clock time and date at job start Tue Mar 31 2020 22:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 119.99817 * 2 1 4 4 H 1.48507 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47368 * 299.99932 * 3 2 1 6 6 H 1.48498 * 109.47315 * 60.00300 * 3 2 1 7 7 C 1.38807 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99957 * 160.62653 * 7 2 1 9 9 N 1.36937 * 119.99875 * 340.62615 * 7 2 1 10 10 C 1.43432 * 120.63408 * 155.69477 * 9 7 2 11 11 C 1.55325 * 116.24226 * 269.33757 * 10 9 7 12 12 C 1.55189 * 108.87210 * 319.45892 * 11 10 9 13 13 O 1.39639 * 110.56763 * 322.14751 * 12 11 10 14 14 C 1.42379 * 108.63498 * 101.17063 * 13 12 11 15 15 H 1.09001 * 108.50686 * 28.48576 * 14 13 12 16 16 C 1.53000 * 108.62148 * 146.33357 * 14 13 12 17 17 N 1.46495 * 109.47127 * 304.24590 * 16 14 13 18 18 C 1.34782 * 120.00278 * 179.97438 * 17 16 14 19 19 O 1.21525 * 119.99398 * 0.02562 * 18 17 16 20 20 C 1.48067 * 120.00480 * 179.97438 * 18 17 16 21 21 C 1.39874 * 120.92843 * 359.97438 * 20 18 17 22 22 C 1.38080 * 119.01529 * 179.97438 * 21 20 18 23 23 N 1.31847 * 120.94350 * 0.02562 * 22 21 20 24 24 C 1.31753 * 122.07092 * 359.97438 * 23 22 21 25 25 C 1.38356 * 120.87179 * 0.26335 * 24 23 22 26 26 Cl 1.73605 * 120.52074 * 179.74619 * 25 24 23 27 27 C 1.46918 * 113.79463 * 267.45011 * 14 13 12 28 28 H 0.97001 * 120.00234 * 0.02562 * 1 2 3 29 29 H 1.09010 * 108.12421 * 31.09681 * 10 9 7 30 30 H 1.08995 * 108.12514 * 147.78477 * 10 9 7 31 31 H 1.08996 * 109.57401 * 79.27831 * 11 10 9 32 32 H 1.08998 * 109.56618 * 199.64488 * 11 10 9 33 33 H 1.09005 * 109.25488 * 82.42935 * 12 11 10 34 34 H 1.08998 * 109.25977 * 201.90292 * 12 11 10 35 35 H 1.09007 * 109.47151 * 184.24703 * 16 14 13 36 36 H 1.08996 * 109.47223 * 64.25144 * 16 14 13 37 37 H 0.97000 * 119.99960 * 359.97438 * 17 16 14 38 38 H 1.07998 * 120.49437 * 0.02562 * 21 20 18 39 39 H 1.08000 * 119.52915 * 180.02562 * 22 21 20 40 40 H 1.08007 * 119.56503 * 179.97438 * 24 23 22 41 41 H 1.08997 * 109.99155 * 176.11682 * 27 14 13 42 42 H 1.09003 * 109.99088 * 297.48948 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0443 -1.2287 -0.3097 9 7 1.3837 -2.3542 0.3945 10 6 1.8498 -3.6320 -0.0608 11 6 1.2141 -4.1674 -1.3730 12 6 -0.3053 -3.8520 -1.3597 13 8 -0.8277 -4.0089 -0.0742 14 6 -0.9687 -2.7225 0.5196 15 1 -1.1318 -1.9917 -0.2725 16 6 -2.1984 -2.7368 1.4299 17 7 -3.3724 -3.1519 0.6582 18 6 -4.5767 -3.2380 1.2572 19 8 -4.6887 -2.9708 2.4374 20 6 -5.7634 -3.6571 0.4771 21 6 -5.6570 -3.9676 -0.8825 22 6 -6.7892 -4.3545 -1.5718 23 7 -7.9579 -4.4327 -0.9664 24 6 -8.1038 -4.1496 0.3121 25 6 -7.0236 -3.7488 1.0782 26 17 -7.2275 -3.3717 2.7605 27 6 0.1961 -2.3042 1.3113 28 1 -0.4850 0.8400 -0.0004 29 1 2.9279 -3.5669 -0.2082 30 1 1.6612 -4.3619 0.7264 31 1 1.6805 -3.6810 -2.2296 32 1 1.3627 -5.2453 -1.4373 33 1 -0.4621 -2.8247 -1.6887 34 1 -0.8192 -4.5300 -2.0411 35 1 -2.3635 -1.7377 1.8333 36 1 -2.0359 -3.4371 2.2492 37 1 -3.2830 -3.3649 -0.2839 38 1 -4.7034 -3.9064 -1.3857 39 1 -6.7165 -4.5966 -2.6218 40 1 -9.0803 -4.2269 0.7670 41 1 0.0515 -1.2883 1.6787 42 1 0.3424 -2.9870 2.1483 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073788526.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:38 Heat of formation + Delta-G solvation = -7.084354 kcal Electronic energy + Delta-G solvation = -27586.300948 eV Core-core repulsion = 23593.960032 eV Total energy + Delta-G solvation = -3992.340916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.80451 -39.42861 -38.62145 -36.69291 -35.10467 -34.67040 -33.11935 -32.10748 -31.38431 -31.10952 -28.72498 -26.14018 -25.39541 -24.53358 -23.70375 -22.55096 -20.92296 -20.59436 -19.66628 -18.42732 -17.23660 -16.91505 -16.42366 -16.10883 -15.67171 -15.37604 -15.19607 -14.92563 -14.51091 -14.39053 -14.16293 -14.10638 -13.89923 -13.19209 -13.06347 -12.65824 -12.50411 -12.36612 -12.09858 -11.99391 -11.47440 -11.31573 -11.28441 -10.91301 -10.80697 -10.51703 -10.39943 -10.20057 -10.14211 -10.02033 -9.75035 -9.59214 -9.46678 -9.26055 -8.89278 -8.80129 -8.57098 -6.88327 -5.98157 -3.36502 0.33987 0.58124 1.87688 2.81735 3.13689 3.29091 3.38842 3.40266 3.50474 4.02684 4.28928 4.38407 4.41036 4.51929 4.63588 4.82951 5.15227 5.19837 5.22994 5.38045 5.48140 5.64380 5.74756 5.84512 5.90402 6.04875 6.06467 6.24640 6.33580 6.38284 6.44191 6.59955 6.62555 6.74197 6.81636 6.89518 7.04148 7.25786 7.42199 7.59685 7.67407 8.03798 8.24353 8.26718 9.01423 9.69580 10.23495 11.11143 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015403 B = 0.003031 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.348261 B = 9234.727498 C = 9875.703763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.288 1.288 7 C -0.248 4.248 8 H 0.070 0.930 9 N -0.588 5.588 10 C 0.160 3.840 11 C -0.172 4.172 12 C 0.066 3.934 13 O -0.370 6.370 14 C 0.060 3.940 15 H 0.107 0.893 16 C 0.122 3.878 17 N -0.702 5.702 18 C 0.545 3.455 19 O -0.514 6.514 20 C -0.076 4.076 21 C -0.128 4.128 22 C 0.097 3.903 23 N -0.458 5.458 24 C 0.107 3.893 25 C -0.046 4.046 26 Cl -0.017 7.017 27 C 0.143 3.857 28 H 0.255 0.745 29 H 0.033 0.967 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.400 0.600 38 H 0.149 0.851 39 H 0.169 0.831 40 H 0.170 0.830 41 H 0.105 0.895 42 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.582 -8.538 -2.535 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.195 4.195 3 Si 0.733 3.267 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.215 1.215 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.308 5.308 10 C 0.031 3.969 11 C -0.213 4.213 12 C -0.012 4.012 13 O -0.289 6.289 14 C 0.002 3.998 15 H 0.125 0.875 16 C -0.002 4.002 17 N -0.353 5.353 18 C 0.330 3.670 19 O -0.390 6.390 20 C -0.088 4.088 21 C -0.149 4.149 22 C -0.059 4.059 23 N -0.167 5.167 24 C -0.052 4.052 25 C -0.076 4.076 26 Cl 0.013 6.987 27 C 0.018 3.982 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.167 0.833 39 H 0.187 0.813 40 H 0.187 0.813 41 H 0.123 0.877 42 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -13.463 -8.573 -1.873 16.070 hybrid contribution 1.293 1.249 -0.232 1.813 sum -12.170 -7.324 -2.105 14.359 Atomic orbital electron populations 1.69860 1.05233 1.25644 1.54635 1.24888 0.95302 0.98358 1.00970 0.86206 0.79415 0.83735 0.77295 1.20358 1.21823 1.21495 1.19308 0.93756 0.85171 1.39523 0.91225 1.44118 1.34216 1.01484 1.50974 1.20379 0.95950 0.87752 0.92785 1.23576 0.96895 0.99105 1.01737 1.22364 0.93546 1.00747 0.84500 1.87512 1.83346 1.29055 1.28980 1.22228 0.93855 0.84865 0.98876 0.87500 1.21798 0.83184 1.00588 0.94650 1.45820 1.07543 1.67743 1.14195 1.17960 0.82817 0.79195 0.87072 1.90858 1.84972 1.48439 1.14762 1.20444 0.93932 0.99915 0.94460 1.22470 1.01469 0.98010 0.92945 1.22862 0.87155 0.95112 1.00815 1.67683 1.26558 1.12716 1.09781 1.22844 0.98065 0.95079 0.89185 1.22282 0.94651 1.01454 0.89217 1.98433 1.97102 1.91865 1.11337 1.20741 0.85399 1.01453 0.90596 0.93495 0.94828 0.95005 0.92463 0.93151 0.91845 0.93069 0.89969 0.91613 0.76531 0.83304 0.81348 0.81280 0.87748 0.96179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -23.03 9.57 55.49 0.53 -22.50 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 20.47 29.60 -169.99 -5.03 15.44 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.30 9.62 -15.06 -0.14 -6.44 16 8 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 9 N -0.59 -13.63 2.61 -174.50 -0.46 -14.09 16 10 C 0.16 3.27 5.33 -4.43 -0.02 3.24 16 11 C -0.17 -3.05 6.75 -24.34 -0.16 -3.22 16 12 C 0.07 1.16 6.38 38.32 0.24 1.40 16 13 O -0.37 -6.78 9.34 -31.93 -0.30 -7.08 16 14 C 0.06 1.16 2.01 -29.64 -0.06 1.10 16 15 H 0.11 2.32 5.24 -51.93 -0.27 2.04 16 16 C 0.12 2.12 5.26 -4.04 -0.02 2.10 16 17 N -0.70 -10.54 5.36 -61.18 -0.33 -10.87 16 18 C 0.55 8.44 7.79 -12.23 -0.10 8.35 16 19 O -0.51 -9.42 14.17 5.34 0.08 -9.34 16 20 C -0.08 -0.96 5.91 -104.62 -0.62 -1.58 16 21 C -0.13 -1.25 9.61 -39.03 -0.38 -1.63 16 22 C 0.10 0.86 11.17 -17.60 -0.20 0.66 16 23 N -0.46 -4.77 10.33 -13.27 -0.14 -4.91 16 24 C 0.11 1.08 10.99 -17.54 -0.19 0.89 16 25 C -0.05 -0.56 6.38 -38.91 -0.25 -0.81 16 26 Cl -0.02 -0.22 26.24 -51.86 -1.36 -1.58 16 27 C 0.14 3.11 4.71 -4.93 -0.02 3.09 16 28 H 0.25 6.40 8.31 -40.82 -0.34 6.06 16 29 H 0.03 0.68 7.96 -51.92 -0.41 0.26 16 30 H 0.03 0.63 7.98 -51.93 -0.41 0.22 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 1.25 6.66 -51.93 -0.35 0.90 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 36 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.40 5.23 6.33 -40.82 -0.26 4.97 16 38 H 0.15 1.15 6.54 -52.49 -0.34 0.81 16 39 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 41 H 0.10 2.51 6.03 -51.93 -0.31 2.20 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -28.54 353.25 -8.98 -37.52 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -5.29 Total: 4.94 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.00 Total: 7.14 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.39 Total: -52.37 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.22 Total: -16.42 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.36 Total: -1.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.54 -8.98 -37.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073788526.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.436 kcal (2) G-P(sol) polarization free energy of solvation -28.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds