Wall clock time and date at job start Tue Mar 31 2020 22:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00352 * 2 1 4 4 H 1.48504 * 109.46947 * 89.99806 * 3 2 1 5 5 H 1.48491 * 109.47074 * 209.99838 * 3 2 1 6 6 H 1.48495 * 109.47048 * 329.99997 * 3 2 1 7 7 C 1.38817 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99887 * 196.69117 * 7 2 1 9 9 N 1.36936 * 119.99880 * 16.69517 * 7 2 1 10 10 C 1.44466 * 118.50838 * 206.73605 * 9 7 2 11 11 C 1.54872 * 109.32327 * 268.93118 * 10 9 7 12 12 C 1.47689 * 109.68365 * 290.10344 * 11 10 9 13 13 O 1.42559 * 113.66130 * 60.80369 * 12 11 10 14 14 C 1.40525 * 113.54265 * 272.23851 * 13 12 11 15 15 H 1.09004 * 109.40713 * 335.17327 * 14 13 12 16 16 C 1.52996 * 109.40892 * 215.40978 * 14 13 12 17 17 N 1.46502 * 109.47102 * 65.00472 * 16 14 13 18 18 C 1.34773 * 120.00551 * 180.02562 * 17 16 14 19 19 O 1.21553 * 119.99545 * 359.97438 * 18 17 16 20 20 C 1.47839 * 120.00187 * 179.97438 * 18 17 16 21 21 C 1.39557 * 120.55484 * 0.02562 * 20 18 17 22 22 N 1.31660 * 120.59353 * 179.97438 * 21 20 18 23 23 C 1.31946 * 121.89655 * 0.02562 * 22 21 20 24 24 C 1.38420 * 121.06455 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.36502 * 180.02562 * 24 23 22 26 26 C 1.38518 * 119.27645 * 359.72190 * 24 23 22 27 27 C 1.48174 * 118.51489 * 26.46639 * 9 7 2 28 28 H 0.97002 * 119.99915 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.50023 * 28.88684 * 10 9 7 30 30 H 1.09002 * 109.49178 * 148.95145 * 10 9 7 31 31 H 1.09001 * 109.43937 * 50.16979 * 11 10 9 32 32 H 1.09004 * 109.43533 * 170.04109 * 11 10 9 33 33 H 1.09003 * 108.64822 * 181.87923 * 12 11 10 34 34 H 1.08994 * 108.64533 * 299.85603 * 12 11 10 35 35 H 1.09001 * 109.47547 * 185.00290 * 16 14 13 36 36 H 1.09003 * 109.47473 * 305.00228 * 16 14 13 37 37 H 0.97006 * 119.99630 * 0.02562 * 17 16 14 38 38 H 1.07995 * 119.70351 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.46602 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.86475 * 180.27621 * 26 24 23 41 41 H 1.09004 * 109.23394 * 259.08733 * 27 9 7 42 42 H 1.09003 * 109.23586 * 18.46063 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0561 -1.2218 0.2692 9 7 1.3687 -2.3632 -0.3396 10 6 1.8647 -3.6085 0.1993 11 6 2.9030 -4.2125 -0.7783 12 6 2.2208 -4.6812 -2.0014 13 8 1.5461 -3.6462 -2.7126 14 6 0.2278 -3.4321 -2.2757 15 1 -0.1538 -4.3437 -1.8156 16 6 -0.6507 -3.0624 -3.4724 17 7 -0.7266 -4.1999 -4.3925 18 6 -1.4506 -4.1035 -5.5251 19 8 -2.0410 -3.0728 -5.7831 20 6 -1.5267 -5.2513 -6.4538 21 6 -0.8539 -6.4403 -6.1688 22 7 -0.9215 -7.4632 -6.9950 23 6 -1.6183 -7.4104 -8.1142 24 6 -2.3139 -6.2676 -8.4693 25 17 -3.2255 -6.2184 -9.9459 26 6 -2.2799 -5.1658 -7.6305 27 6 0.1936 -2.2848 -1.2389 28 1 -0.4850 0.8401 -0.0004 29 1 2.3374 -3.4247 1.1640 30 1 1.0363 -4.3052 0.3268 31 1 3.6383 -3.4521 -1.0419 32 1 3.4065 -5.0523 -0.2993 33 1 2.9609 -5.1327 -2.6621 34 1 1.4921 -5.4428 -1.7238 35 1 -1.6521 -2.8097 -3.1238 36 1 -0.2189 -2.2053 -3.9892 37 1 -0.2557 -5.0226 -4.1864 38 1 -0.2725 -6.5222 -5.2623 39 1 -1.6464 -8.2729 -8.7637 40 1 -2.8168 -4.2626 -7.8802 41 1 -0.7180 -2.3590 -0.6458 42 1 0.2044 -1.3282 -1.7613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073816267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:36 Heat of formation + Delta-G solvation = -20.135209 kcal Electronic energy + Delta-G solvation = -26916.082435 eV Core-core repulsion = 22923.175591 eV Total energy + Delta-G solvation = -3992.906844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.01265 -39.44914 -38.65569 -37.11580 -35.28772 -34.77982 -33.04063 -32.72074 -31.78771 -30.96258 -28.80433 -26.10362 -25.40932 -24.50779 -24.03845 -22.57872 -21.12617 -20.72547 -19.78815 -18.50341 -17.39374 -17.17186 -16.81218 -16.33121 -15.79596 -15.70521 -15.38967 -14.97920 -14.86256 -14.41593 -14.14208 -13.79765 -13.64640 -13.39643 -13.08242 -12.96629 -12.61462 -12.52144 -12.43646 -12.33830 -11.85468 -11.71048 -11.19229 -10.90786 -10.75530 -10.62441 -10.61050 -10.30847 -10.27047 -10.06784 -9.96302 -9.84630 -9.69757 -9.52331 -9.07765 -8.91788 -8.43013 -6.72264 -5.81112 -3.23506 0.08960 0.52514 1.48615 2.54985 2.96737 3.35618 3.37800 3.45652 3.48440 3.77846 4.15693 4.19803 4.29388 4.36533 4.49707 4.58231 4.82539 5.07441 5.32474 5.35691 5.40453 5.44847 5.46703 5.57729 5.66583 5.82326 5.85896 5.92293 6.01372 6.16344 6.22797 6.33086 6.38042 6.50286 6.73802 6.93847 7.11882 7.20963 7.35870 7.50857 7.80132 7.89841 8.03600 8.43850 9.18987 9.85719 10.29900 11.27044 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.002426 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.722544 B =11538.971762 C =12577.773104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.005 3.995 3 Si 0.900 3.100 4 H -0.288 1.288 5 H -0.280 1.280 6 H -0.289 1.289 7 C -0.256 4.256 8 H 0.064 0.936 9 N -0.585 5.585 10 C 0.157 3.843 11 C -0.184 4.184 12 C 0.078 3.922 13 O -0.360 6.360 14 C 0.054 3.946 15 H 0.049 0.951 16 C 0.124 3.876 17 N -0.711 5.711 18 C 0.559 3.441 19 O -0.530 6.530 20 C -0.166 4.166 21 C 0.138 3.862 22 N -0.469 5.469 23 C 0.133 3.867 24 C -0.098 4.098 25 Cl -0.046 7.046 26 C -0.009 4.009 27 C 0.166 3.834 28 H 0.254 0.746 29 H 0.050 0.950 30 H 0.028 0.972 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.034 0.966 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.398 0.602 38 H 0.167 0.833 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.039 0.961 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -16.702 -14.208 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.730 3.270 4 H -0.215 1.215 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.082 0.918 9 N -0.306 5.306 10 C 0.028 3.972 11 C -0.224 4.224 12 C 0.001 3.999 13 O -0.278 6.278 14 C -0.006 4.006 15 H 0.067 0.933 16 C 0.001 3.999 17 N -0.362 5.362 18 C 0.343 3.657 19 O -0.407 6.407 20 C -0.172 4.172 21 C -0.020 4.020 22 N -0.177 5.177 23 C -0.024 4.024 24 C -0.127 4.127 25 Cl -0.018 7.018 26 C -0.036 4.036 27 C 0.040 3.960 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.046 0.954 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.103 0.897 36 H 0.100 0.900 37 H 0.233 0.767 38 H 0.184 0.816 39 H 0.188 0.812 40 H 0.177 0.823 41 H 0.057 0.943 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.902 -16.453 -14.422 22.224 hybrid contribution 0.122 1.123 -0.027 1.130 sum -3.780 -15.329 -14.449 21.402 Atomic orbital electron populations 1.70024 1.05221 1.25627 1.54068 1.25003 0.95276 0.98404 1.00631 0.86332 0.79292 0.83733 0.77623 1.21458 1.20507 1.21510 1.19142 0.92706 0.85119 1.41578 0.91811 1.43566 1.33583 1.02013 1.51428 1.20674 0.93882 0.88109 0.94486 1.22294 1.01326 1.00794 0.98010 1.21320 0.95696 0.88583 0.94256 1.87440 1.25603 1.56939 1.57828 1.23247 0.82749 1.00452 0.94137 0.93345 1.21692 1.00301 0.88483 0.89461 1.45912 1.50399 1.18144 1.21708 1.17859 0.79748 0.86804 0.81240 1.90822 1.45192 1.30004 1.74663 1.21110 1.02061 0.96687 0.97338 1.23164 0.93867 0.87248 0.97760 1.67874 1.17149 1.29480 1.03221 1.23036 0.90147 0.96075 0.93185 1.22023 1.01302 0.97338 0.92018 1.98403 1.72477 1.98559 1.32313 1.21705 0.93516 0.97962 0.90432 1.21685 0.89619 0.95684 0.88987 0.93564 0.93111 0.95365 0.91093 0.92317 0.91442 0.94736 0.89670 0.89993 0.76685 0.81551 0.81227 0.82266 0.94339 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.56 11.09 55.49 0.62 -24.95 16 2 C 0.01 0.15 4.85 -17.43 -0.08 0.06 16 3 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 4 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.26 -6.85 9.42 -15.06 -0.14 -6.99 16 8 H 0.06 1.70 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -13.96 2.58 -171.25 -0.44 -14.40 16 10 C 0.16 3.08 5.68 -4.14 -0.02 3.06 16 11 C -0.18 -3.03 6.03 -28.31 -0.17 -3.20 16 12 C 0.08 1.16 6.04 34.59 0.21 1.37 16 13 O -0.36 -6.36 9.78 -34.09 -0.33 -6.70 16 14 C 0.05 0.93 2.35 -25.85 -0.06 0.87 16 15 H 0.05 0.74 7.20 -51.93 -0.37 0.37 16 16 C 0.12 1.95 5.24 -4.04 -0.02 1.93 16 17 N -0.71 -9.01 5.45 -61.25 -0.33 -9.34 16 18 C 0.56 7.55 7.78 -12.33 -0.10 7.45 16 19 O -0.53 -9.10 16.42 5.32 0.09 -9.01 16 20 C -0.17 -1.78 5.89 -104.83 -0.62 -2.40 16 21 C 0.14 1.26 10.71 -17.13 -0.18 1.07 16 22 N -0.47 -4.40 10.34 -12.89 -0.13 -4.53 16 23 C 0.13 1.07 10.97 -17.44 -0.19 0.87 16 24 C -0.10 -0.84 6.34 -39.41 -0.25 -1.09 16 25 Cl -0.05 -0.36 28.98 -51.86 -1.50 -1.86 16 26 C -0.01 -0.09 9.52 -38.83 -0.37 -0.46 16 27 C 0.17 3.73 4.54 -2.24 -0.01 3.72 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.05 1.02 7.97 -51.93 -0.41 0.60 16 30 H 0.03 0.51 8.10 -51.93 -0.42 0.09 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.03 0.44 7.27 -51.93 -0.38 0.07 16 35 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.40 4.01 6.53 -40.82 -0.27 3.74 16 38 H 0.17 1.13 6.42 -52.49 -0.34 0.79 16 39 H 0.17 0.90 8.06 -52.48 -0.42 0.48 16 40 H 0.16 1.60 7.74 -52.49 -0.41 1.19 16 41 H 0.04 0.92 8.02 -51.93 -0.42 0.50 16 42 H 0.08 2.10 6.31 -51.93 -0.33 1.78 16 LS Contribution 361.42 15.07 5.45 5.45 Total: -1.00 -31.49 361.42 -9.06 -40.55 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.42 Total: 1.88 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: -2.01 Total: 6.27 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: -0.29 Total: -53.22 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.25 Total: -15.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.50 Total: -1.86 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.49 -9.06 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073816267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.416 kcal (2) G-P(sol) polarization free energy of solvation -31.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds