Wall clock time and date at job start Tue Mar 31 2020 22:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86800 * 120.00352 * 2 1 4 4 H 1.48504 * 109.46947 * 89.99806 * 3 2 1 5 5 H 1.48491 * 109.47074 * 209.99838 * 3 2 1 6 6 H 1.48495 * 109.47048 * 329.99997 * 3 2 1 7 7 C 1.38817 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99887 * 196.69117 * 7 2 1 9 9 N 1.36936 * 119.99880 * 16.69517 * 7 2 1 10 10 C 1.44466 * 118.50838 * 206.73605 * 9 7 2 11 11 C 1.54872 * 109.32327 * 268.93118 * 10 9 7 12 12 C 1.47689 * 109.68365 * 290.10344 * 11 10 9 13 13 O 1.42559 * 113.66130 * 60.80369 * 12 11 10 14 14 C 1.40525 * 113.54265 * 272.23851 * 13 12 11 15 15 H 1.09004 * 109.40713 * 335.17327 * 14 13 12 16 16 C 1.52996 * 109.40892 * 215.40978 * 14 13 12 17 17 N 1.46502 * 109.47102 * 65.00472 * 16 14 13 18 18 C 1.34773 * 120.00551 * 180.02562 * 17 16 14 19 19 O 1.21553 * 119.99545 * 359.97438 * 18 17 16 20 20 C 1.47839 * 120.00187 * 179.97438 * 18 17 16 21 21 C 1.39557 * 120.55484 * 0.02562 * 20 18 17 22 22 N 1.31660 * 120.59353 * 179.97438 * 21 20 18 23 23 C 1.31946 * 121.89655 * 0.02562 * 22 21 20 24 24 C 1.38420 * 121.06455 * 359.97438 * 23 22 21 25 25 Cl 1.73598 * 120.36502 * 180.02562 * 24 23 22 26 26 C 1.38518 * 119.27645 * 359.72190 * 24 23 22 27 27 C 1.48174 * 118.51489 * 26.46639 * 9 7 2 28 28 H 0.97002 * 119.99915 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.50023 * 28.88684 * 10 9 7 30 30 H 1.09002 * 109.49178 * 148.95145 * 10 9 7 31 31 H 1.09001 * 109.43937 * 50.16979 * 11 10 9 32 32 H 1.09004 * 109.43533 * 170.04109 * 11 10 9 33 33 H 1.09003 * 108.64822 * 181.87923 * 12 11 10 34 34 H 1.08994 * 108.64533 * 299.85603 * 12 11 10 35 35 H 1.09001 * 109.47547 * 185.00290 * 16 14 13 36 36 H 1.09003 * 109.47473 * 305.00228 * 16 14 13 37 37 H 0.97006 * 119.99630 * 0.02562 * 17 16 14 38 38 H 1.07995 * 119.70351 * 359.97438 * 21 20 18 39 39 H 1.08005 * 119.46602 * 179.97438 * 23 22 21 40 40 H 1.07995 * 120.86475 * 180.27621 * 26 24 23 41 41 H 1.09004 * 109.23394 * 259.08733 * 27 9 7 42 42 H 1.09003 * 109.23586 * 18.46063 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0463 1.4001 5 1 3.5477 1.4400 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0561 -1.2218 0.2692 9 7 1.3687 -2.3632 -0.3396 10 6 1.8647 -3.6085 0.1993 11 6 2.9030 -4.2125 -0.7783 12 6 2.2208 -4.6812 -2.0014 13 8 1.5461 -3.6462 -2.7126 14 6 0.2278 -3.4321 -2.2757 15 1 -0.1538 -4.3437 -1.8156 16 6 -0.6507 -3.0624 -3.4724 17 7 -0.7266 -4.1999 -4.3925 18 6 -1.4506 -4.1035 -5.5251 19 8 -2.0410 -3.0728 -5.7831 20 6 -1.5267 -5.2513 -6.4538 21 6 -0.8539 -6.4403 -6.1688 22 7 -0.9215 -7.4632 -6.9950 23 6 -1.6183 -7.4104 -8.1142 24 6 -2.3139 -6.2676 -8.4693 25 17 -3.2255 -6.2184 -9.9459 26 6 -2.2799 -5.1658 -7.6305 27 6 0.1936 -2.2848 -1.2389 28 1 -0.4850 0.8401 -0.0004 29 1 2.3374 -3.4247 1.1640 30 1 1.0363 -4.3052 0.3268 31 1 3.6383 -3.4521 -1.0419 32 1 3.4065 -5.0523 -0.2993 33 1 2.9609 -5.1327 -2.6621 34 1 1.4921 -5.4428 -1.7238 35 1 -1.6521 -2.8097 -3.1238 36 1 -0.2189 -2.2053 -3.9892 37 1 -0.2557 -5.0226 -4.1864 38 1 -0.2725 -6.5222 -5.2623 39 1 -1.6464 -8.2729 -8.7637 40 1 -2.8168 -4.2626 -7.8802 41 1 -0.7180 -2.3590 -0.6458 42 1 0.2044 -1.3282 -1.7613 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073816267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:35 Heat of formation + Delta-G solvation = -41.515288 kcal Electronic energy + Delta-G solvation = -26917.009544 eV Core-core repulsion = 22923.175591 eV Total energy + Delta-G solvation = -3993.833953 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84511 -40.61535 -39.89466 -37.75494 -36.89899 -36.12899 -34.23014 -33.74480 -33.08450 -32.26080 -30.27456 -27.50852 -27.04004 -25.63429 -24.80051 -24.00690 -22.40456 -21.87848 -21.39202 -19.44729 -18.80924 -18.15391 -17.78961 -17.75053 -17.04535 -16.72387 -16.53279 -16.33606 -16.16151 -15.71618 -15.37011 -15.22555 -14.75710 -14.50029 -14.40137 -14.20373 -13.92485 -13.84478 -13.67972 -13.30899 -13.15064 -13.03565 -12.74429 -12.43171 -12.34120 -12.28869 -12.01193 -11.84394 -11.60412 -11.39267 -11.33594 -11.09253 -10.73114 -10.55202 -10.33049 -10.25235 -10.10705 -8.65738 -7.86194 -5.30177 -0.64860 -0.19279 0.83278 1.43251 1.46865 1.55011 1.62241 1.90833 2.51591 2.55621 2.92636 3.11880 3.27128 3.49595 3.50381 3.57230 3.62498 3.84687 4.04926 4.09444 4.16422 4.25315 4.28103 4.46248 4.59325 4.63443 4.66747 4.72839 4.80865 4.87023 4.90992 5.13654 5.16818 5.19953 5.26003 5.33714 5.53991 5.62881 5.71489 6.34542 6.40529 6.53622 6.59224 7.01241 7.17980 7.94644 8.31751 9.18487 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019417 B = 0.002426 C = 0.002226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1441.722544 B =11538.971762 C =12577.773104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.047 4.047 3 Si 0.957 3.043 4 H -0.283 1.283 5 H -0.276 1.276 6 H -0.295 1.295 7 C -0.259 4.259 8 H 0.060 0.940 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.170 4.170 12 C 0.067 3.933 13 O -0.377 6.377 14 C 0.076 3.924 15 H 0.079 0.921 16 C 0.135 3.865 17 N -0.697 5.697 18 C 0.561 3.439 19 O -0.575 6.575 20 C -0.180 4.180 21 C 0.149 3.851 22 N -0.480 5.480 23 C 0.144 3.856 24 C -0.099 4.099 25 Cl -0.038 7.038 26 C -0.016 4.016 27 C 0.172 3.828 28 H 0.248 0.752 29 H 0.039 0.961 30 H 0.047 0.953 31 H 0.041 0.959 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.054 0.946 37 H 0.415 0.585 38 H 0.191 0.809 39 H 0.200 0.800 40 H 0.151 0.849 41 H 0.014 0.986 42 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.815 -19.947 -15.179 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.243 4.243 3 Si 0.786 3.214 4 H -0.210 1.210 5 H -0.201 1.201 6 H -0.221 1.221 7 C -0.390 4.390 8 H 0.078 0.922 9 N -0.325 5.325 10 C 0.020 3.980 11 C -0.211 4.211 12 C -0.009 4.009 13 O -0.296 6.296 14 C 0.016 3.984 15 H 0.097 0.903 16 C 0.011 3.989 17 N -0.348 5.348 18 C 0.348 3.652 19 O -0.455 6.455 20 C -0.185 4.185 21 C -0.009 4.009 22 N -0.188 5.188 23 C -0.013 4.013 24 C -0.128 4.128 25 Cl -0.009 7.009 26 C -0.043 4.043 27 C 0.046 3.954 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.253 0.747 38 H 0.208 0.792 39 H 0.216 0.784 40 H 0.169 0.831 41 H 0.032 0.968 42 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -2.873 -19.768 -15.388 25.215 hybrid contribution -0.161 2.028 0.268 2.052 sum -3.034 -17.740 -15.120 23.506 Atomic orbital electron populations 1.70165 1.06302 1.25625 1.55744 1.25659 0.96009 1.01106 1.01518 0.85440 0.78111 0.80374 0.77525 1.21000 1.20100 1.22097 1.19396 0.92694 0.86564 1.40356 0.92246 1.43815 1.33645 1.02668 1.52337 1.20920 0.95239 0.86965 0.94839 1.22146 0.99728 1.01000 0.98195 1.21608 0.96965 0.88372 0.93985 1.87447 1.25655 1.58306 1.58173 1.22815 0.83361 0.99173 0.93055 0.90332 1.21304 0.99477 0.88747 0.89378 1.45635 1.50380 1.17796 1.21025 1.18247 0.78677 0.86987 0.81280 1.90801 1.47071 1.31995 1.75638 1.20830 1.04062 0.96347 0.97289 1.23472 0.92948 0.86227 0.98301 1.67992 1.17710 1.29329 1.03738 1.23528 0.88456 0.96477 0.92839 1.22019 1.01558 0.97064 0.92135 1.98410 1.72296 1.98540 1.31689 1.21743 0.93483 0.98348 0.90735 1.21453 0.88320 0.96142 0.89521 0.94245 0.94270 0.93461 0.94054 0.88559 0.88440 0.91511 0.90262 0.92753 0.74728 0.79192 0.78366 0.83084 0.96773 0.94093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.84 11.09 21.65 0.24 -54.60 16 2 C -0.05 -2.67 4.85 84.86 0.41 -2.26 16 3 Si 0.96 45.79 29.59 68.60 2.03 47.82 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 7 C -0.26 -14.19 9.42 84.03 0.79 -13.40 16 8 H 0.06 3.23 7.88 -2.91 -0.02 3.20 16 9 N -0.60 -29.04 2.58 -695.71 -1.79 -30.83 16 10 C 0.15 5.58 5.68 87.40 0.50 6.07 16 11 C -0.17 -5.13 6.03 29.57 0.18 -4.96 16 12 C 0.07 1.71 6.04 70.32 0.43 2.13 16 13 O -0.38 -12.57 9.78 -144.91 -1.42 -13.99 16 14 C 0.08 2.53 2.35 31.16 0.07 2.61 16 15 H 0.08 2.16 7.20 -2.38 -0.02 2.15 16 16 C 0.14 4.30 5.24 86.38 0.45 4.75 16 17 N -0.70 -16.77 5.45 -465.98 -2.54 -19.31 16 18 C 0.56 14.95 7.78 86.79 0.68 15.62 16 19 O -0.57 -20.36 16.42 -3.88 -0.06 -20.42 16 20 C -0.18 -3.61 5.89 -20.00 -0.12 -3.72 16 21 C 0.15 2.28 10.71 85.04 0.91 3.19 16 22 N -0.48 -7.45 10.34 -194.68 -2.01 -9.47 16 23 C 0.14 1.88 10.97 84.72 0.93 2.81 16 24 C -0.10 -1.50 6.34 22.38 0.14 -1.36 16 25 Cl -0.04 -0.52 28.98 -2.72 -0.08 -0.60 16 26 C -0.02 -0.31 9.52 22.76 0.22 -0.09 16 27 C 0.17 7.91 4.54 86.63 0.39 8.31 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H 0.04 1.54 7.97 -2.39 -0.02 1.53 16 30 H 0.05 1.61 8.10 -2.39 -0.02 1.59 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.07 1.33 7.27 -2.39 -0.02 1.31 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.41 7.09 6.53 -92.70 -0.61 6.48 16 38 H 0.19 1.83 6.42 -2.91 -0.02 1.82 16 39 H 0.20 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.15 3.10 7.74 -2.91 -0.02 3.08 16 41 H 0.01 0.71 8.02 -2.39 -0.02 0.69 16 42 H 0.04 2.20 6.31 -2.39 -0.02 2.19 16 Total: -1.00 -71.60 361.42 0.79 -70.80 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: 0.45 Total: 10.90 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 5.98 Total: 19.70 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -6.11 Total: -114.20 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -1.48 Total: -34.41 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -0.08 Total: -0.60 kcal Total: -71.60 0.79 -70.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073816267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.289 kcal (2) G-P(sol) polarization free energy of solvation -71.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds