Wall clock time and date at job start Tue Mar 31 2020 22:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86803 * 120.00090 * 2 1 4 4 H 1.48498 * 109.46969 * 239.99746 * 3 2 1 5 5 H 1.48496 * 109.46856 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47046 * 120.00069 * 3 2 1 7 7 C 1.38817 * 120.00010 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99684 * 160.76395 * 7 2 1 9 9 N 1.36936 * 120.00166 * 340.77214 * 7 2 1 10 10 C 1.43418 * 120.63795 * 155.64837 * 9 7 2 11 11 C 1.55336 * 116.23975 * 269.33165 * 10 9 7 12 12 C 1.55187 * 108.86940 * 319.46746 * 11 10 9 13 13 O 1.39642 * 110.57083 * 322.13725 * 12 11 10 14 14 C 1.42377 * 108.63351 * 101.17888 * 13 12 11 15 15 H 1.09003 * 108.62128 * 28.42114 * 14 13 12 16 16 C 1.52995 * 108.62525 * 146.34225 * 14 13 12 17 17 N 1.46509 * 109.46815 * 299.99800 * 16 14 13 18 18 C 1.34768 * 119.99784 * 179.97438 * 17 16 14 19 19 O 1.21523 * 120.00485 * 359.97438 * 18 17 16 20 20 C 1.48110 * 119.99797 * 179.97438 * 18 17 16 21 21 C 1.39349 * 119.70703 * 180.02562 * 20 18 17 22 22 C 1.38531 * 119.07599 * 180.02562 * 21 20 18 23 23 C 1.38764 * 118.47880 * 359.75087 * 22 21 20 24 24 Cl 1.73595 * 120.33894 * 180.24978 * 23 22 21 25 25 C 1.38731 * 119.32232 * 0.46961 * 23 22 21 26 26 N 1.31488 * 120.88057 * 359.52123 * 25 23 22 27 27 C 1.46928 * 113.78837 * 267.45811 * 14 13 12 28 28 H 0.96999 * 119.99645 * 0.02562 * 1 2 3 29 29 H 1.08997 * 108.12853 * 147.57707 * 10 9 7 30 30 H 1.08997 * 107.96351 * 30.96104 * 10 9 7 31 31 H 1.08998 * 109.56875 * 199.64395 * 11 10 9 32 32 H 1.09004 * 109.56541 * 79.28110 * 11 10 9 33 33 H 1.09010 * 109.25176 * 201.86069 * 12 11 10 34 34 H 1.08999 * 109.25851 * 82.42674 * 12 11 10 35 35 H 1.08992 * 109.47517 * 180.02562 * 16 14 13 36 36 H 1.09003 * 109.47185 * 59.99239 * 16 14 13 37 37 H 0.97002 * 119.99977 * 359.97438 * 17 16 14 38 38 H 1.07997 * 120.46248 * 0.02562 * 21 20 18 39 39 H 1.08003 * 120.75669 * 179.97438 * 22 21 20 40 40 H 1.08001 * 119.55506 * 179.79127 * 25 23 22 41 41 H 1.08993 * 109.98864 * 176.12485 * 27 14 13 42 42 H 1.08996 * 109.98313 * 297.48704 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0451 -1.2284 -0.3076 9 7 1.3830 -2.3549 0.3916 10 6 1.8494 -3.6319 -0.0649 11 6 1.2154 -4.1650 -1.3790 12 6 -0.3039 -3.8491 -1.3674 13 8 -0.8283 -4.0080 -0.0829 14 6 -0.9699 -2.7226 0.5128 15 1 -1.1304 -1.9887 -0.2770 16 6 -2.2008 -2.7380 1.4213 17 7 -3.3905 -3.0528 0.6264 18 6 -4.5985 -3.1219 1.2199 19 8 -4.7009 -2.9236 2.4144 20 6 -5.8013 -3.4395 0.4161 21 6 -7.0475 -3.5089 1.0359 22 6 -8.1637 -3.8075 0.2718 23 6 -7.9961 -4.0217 -1.0889 24 17 -9.3627 -4.3927 -2.0931 25 6 -6.7245 -3.9409 -1.6378 26 7 -5.6827 -3.6557 -0.8881 27 6 0.1941 -2.3059 1.3068 28 1 -0.4849 0.8401 -0.0004 29 1 1.6628 -4.3624 0.7222 30 1 2.9272 -3.5631 -0.2120 31 1 1.3639 -5.2428 -1.4449 32 1 1.6833 -3.6772 -2.2342 33 1 -0.8169 -4.5255 -2.0513 34 1 -0.4599 -2.8213 -1.6949 35 1 -2.3226 -1.7591 1.8848 36 1 -2.0711 -3.4937 2.1961 37 1 -3.3087 -3.2114 -0.3271 38 1 -7.1417 -3.3323 2.0972 39 1 -9.1425 -3.8686 0.7242 40 1 -6.5893 -4.1103 -2.6959 41 1 0.0492 -1.2906 1.6758 42 1 0.3389 -2.9902 2.1428 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073863411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:43 Heat of formation + Delta-G solvation = -33.764697 kcal Electronic energy + Delta-G solvation = -27252.486959 eV Core-core repulsion = 23258.989096 eV Total energy + Delta-G solvation = -3993.497863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.80516 -40.78653 -39.87174 -37.73618 -36.79771 -36.07852 -34.02780 -33.61588 -33.00573 -32.28202 -30.27261 -27.50167 -27.06230 -25.54813 -24.81606 -24.03280 -22.41260 -21.79644 -21.29219 -19.41698 -18.88446 -18.13432 -17.73025 -17.57335 -16.84300 -16.57141 -16.51990 -16.30059 -16.03666 -15.58782 -15.48749 -15.20490 -14.80705 -14.74208 -14.28901 -14.19982 -13.91291 -13.62775 -13.57755 -13.27421 -13.09089 -12.93035 -12.60436 -12.51697 -12.38328 -12.30679 -11.92226 -11.79748 -11.50913 -11.36209 -11.18781 -11.06007 -10.75929 -10.54899 -10.29971 -10.25683 -10.00670 -8.70869 -7.88376 -5.29204 -0.68593 0.00768 0.84055 1.48955 1.52481 1.53262 1.57638 2.01397 2.53133 2.62443 2.98810 3.11764 3.28697 3.50779 3.57229 3.62608 3.76820 3.91613 4.13709 4.27491 4.37346 4.41027 4.54780 4.57231 4.66533 4.73585 4.76530 4.79573 4.80224 4.95251 5.08306 5.18861 5.19040 5.23617 5.33033 5.36218 5.41682 5.50186 5.69081 6.28665 6.37715 6.51635 6.60411 7.03899 7.11938 7.84154 8.37161 9.17363 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016081 B = 0.002601 C = 0.002520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.764615 B =10763.172730 C =11110.448339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.037 4.037 3 Si 0.960 3.040 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.601 5.601 10 C 0.154 3.846 11 C -0.164 4.164 12 C 0.069 3.931 13 O -0.368 6.368 14 C 0.079 3.921 15 H 0.084 0.916 16 C 0.130 3.870 17 N -0.688 5.688 18 C 0.562 3.438 19 O -0.568 6.568 20 C 0.065 3.935 21 C -0.099 4.099 22 C -0.061 4.061 23 C -0.068 4.068 24 Cl -0.032 7.032 25 C 0.111 3.889 26 N -0.461 5.461 27 C 0.145 3.855 28 H 0.251 0.749 29 H 0.035 0.965 30 H 0.032 0.968 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.035 0.965 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.414 0.586 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.194 0.806 41 H 0.080 0.920 42 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.665 -9.599 -3.825 20.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.233 4.233 3 Si 0.789 3.211 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.212 1.212 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.323 5.323 10 C 0.026 3.974 11 C -0.205 4.205 12 C -0.009 4.009 13 O -0.286 6.286 14 C 0.020 3.980 15 H 0.101 0.899 16 C 0.005 3.995 17 N -0.337 5.337 18 C 0.347 3.653 19 O -0.448 6.448 20 C -0.072 4.072 21 C -0.120 4.120 22 C -0.087 4.087 23 C -0.097 4.097 24 Cl -0.003 7.003 25 C -0.050 4.050 26 N -0.172 5.172 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.097 0.903 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.251 0.749 38 H 0.181 0.819 39 H 0.203 0.797 40 H 0.211 0.789 41 H 0.098 0.902 42 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -17.071 -9.458 -3.309 19.795 hybrid contribution -0.076 1.171 -0.320 1.217 sum -17.148 -8.286 -3.630 19.388 Atomic orbital electron populations 1.69995 1.05842 1.25744 1.54711 1.25485 0.96043 1.00537 1.01219 0.85467 0.77705 0.80071 0.77852 1.20734 1.22074 1.21150 1.19374 0.93664 0.86318 1.40016 0.91868 1.44231 1.34481 1.01937 1.51625 1.20501 0.96025 0.86763 0.94128 1.23496 0.96445 1.00634 0.99930 1.22385 0.93893 1.00053 0.84565 1.87509 1.83382 1.28237 1.29472 1.21770 0.93569 0.84755 0.97925 0.89879 1.21522 0.83312 1.00594 0.94050 1.45741 1.06104 1.68455 1.13433 1.18209 0.83332 0.77216 0.86531 1.90752 1.86382 1.52212 1.15464 1.21106 0.93945 1.01392 0.90763 1.22267 0.90577 0.96129 1.03033 1.21889 1.00969 0.94634 0.91195 1.22447 0.90897 1.02844 0.93518 1.98414 1.41564 1.92319 1.68010 1.23247 0.85634 0.94604 1.01501 1.67668 1.34098 1.10173 1.05275 1.20674 0.86086 1.00202 0.91035 0.94002 0.94613 0.94992 0.90329 0.92741 0.89871 0.94616 0.91306 0.91562 0.74897 0.81870 0.79733 0.78888 0.90193 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.80 9.56 21.65 0.21 -48.59 16 2 C -0.04 -1.91 4.92 84.86 0.42 -1.49 16 3 Si 0.96 43.28 29.60 68.60 2.03 45.31 16 4 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.26 -13.85 9.61 84.03 0.81 -13.04 16 8 H 0.06 3.31 7.87 -2.91 -0.02 3.29 16 9 N -0.60 -29.01 2.61 -706.01 -1.84 -30.85 16 10 C 0.15 6.39 5.33 87.75 0.47 6.86 16 11 C -0.16 -5.89 6.75 32.15 0.22 -5.67 16 12 C 0.07 2.52 6.38 72.73 0.46 2.98 16 13 O -0.37 -14.29 9.54 -137.21 -1.31 -15.60 16 14 C 0.08 3.27 1.95 28.71 0.06 3.32 16 15 H 0.08 3.93 5.23 -2.39 -0.01 3.92 16 16 C 0.13 4.92 5.24 86.38 0.45 5.38 16 17 N -0.69 -23.62 5.42 -465.72 -2.52 -26.14 16 18 C 0.56 18.73 7.81 86.87 0.68 19.41 16 19 O -0.57 -21.64 16.32 -3.79 -0.06 -21.70 16 20 C 0.06 1.72 6.75 41.90 0.28 2.00 16 21 C -0.10 -1.98 9.63 22.61 0.22 -1.77 16 22 C -0.06 -0.86 9.97 22.47 0.22 -0.63 16 23 C -0.07 -1.01 6.35 22.51 0.14 -0.87 16 24 Cl -0.03 -0.39 28.99 -2.72 -0.08 -0.47 16 25 C 0.11 1.98 10.98 84.86 0.93 2.91 16 26 N -0.46 -11.24 9.54 -184.81 -1.76 -13.01 16 27 C 0.14 6.65 4.71 83.79 0.39 7.05 16 28 H 0.25 13.23 8.31 -92.71 -0.77 12.45 16 29 H 0.04 1.44 7.99 -2.39 -0.02 1.42 16 30 H 0.03 1.31 7.95 -2.39 -0.02 1.29 16 31 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.05 1.97 8.14 -2.38 -0.02 1.96 16 33 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 34 H 0.04 1.52 6.66 -2.39 -0.02 1.50 16 35 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.41 13.69 7.65 -92.71 -0.71 12.98 16 38 H 0.16 3.06 7.64 -2.91 -0.02 3.03 16 39 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 40 H 0.19 2.40 8.06 -2.91 -0.02 2.37 16 41 H 0.08 4.07 6.02 -2.39 -0.01 4.05 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -61.03 359.58 0.76 -60.27 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: 0.35 Total: 24.34 kcal Atomic # 6 Polarization: 20.69 SS G_CDS: 5.75 Total: 26.44 kcal Atomic # 7 Polarization: -112.67 SS G_CDS: -5.92 Total: -118.60 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -1.37 Total: -37.30 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -0.08 Total: -0.47 kcal Total: -61.03 0.76 -60.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073863411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.502 kcal (2) G-P(sol) polarization free energy of solvation -61.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds