Wall clock time and date at job start Tue Mar 31 2020 22:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 119.99887 * 2 1 4 4 H 1.48500 * 109.47014 * 90.00034 * 3 2 1 5 5 H 1.48503 * 109.47203 * 209.99933 * 3 2 1 6 6 H 1.48497 * 109.46972 * 329.99611 * 3 2 1 7 7 C 1.38814 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00177 * 196.65790 * 7 2 1 9 9 N 1.36932 * 119.99858 * 16.66131 * 7 2 1 10 10 C 1.47499 * 118.76194 * 26.39169 * 9 7 2 11 11 C 1.53949 * 110.82317 * 138.25223 * 10 9 7 12 12 C 1.51537 * 109.72755 * 320.31040 * 11 10 9 13 13 O 1.42157 * 108.76552 * 91.29255 * 12 11 10 14 14 C 1.38016 * 119.43350 * 272.78716 * 13 12 11 15 15 H 1.09003 * 109.47145 * 303.41763 * 14 13 12 16 16 C 1.52999 * 109.46599 * 183.43096 * 14 13 12 17 17 N 1.46507 * 109.47202 * 64.98326 * 16 14 13 18 18 C 1.34780 * 119.99731 * 179.97438 * 17 16 14 19 19 O 1.21520 * 120.00455 * 0.02562 * 18 17 16 20 20 C 1.48084 * 119.99751 * 179.97438 * 18 17 16 21 21 N 1.32784 * 119.73593 * 359.72892 * 20 18 17 22 22 C 1.31461 * 121.65252 * 179.74596 * 21 20 18 23 23 C 1.38645 * 120.94373 * 0.53062 * 22 21 20 24 24 C 1.38522 * 119.37279 * 359.73990 * 23 22 21 25 25 C 1.38807 * 118.47482 * 359.97438 * 24 23 22 26 26 Cl 1.73598 * 120.48595 * 180.02562 * 25 24 23 27 27 C 1.45126 * 118.75419 * 206.66111 * 9 7 2 28 28 H 0.96995 * 120.00444 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.17529 * 258.77713 * 10 9 7 30 30 H 1.09007 * 109.16444 * 17.97408 * 10 9 7 31 31 H 1.08996 * 109.46056 * 200.18150 * 11 10 9 32 32 H 1.09000 * 109.29615 * 80.33895 * 11 10 9 33 33 H 1.09003 * 109.58550 * 331.50860 * 12 11 10 34 34 H 1.09000 * 109.58890 * 211.07311 * 12 11 10 35 35 H 1.09005 * 109.47357 * 184.98089 * 16 14 13 36 36 H 1.09004 * 109.47225 * 304.98491 * 16 14 13 37 37 H 0.96992 * 119.99923 * 0.02562 * 17 16 14 38 38 H 1.08004 * 119.52824 * 180.24883 * 22 21 20 39 39 H 1.08001 * 120.31230 * 179.75967 * 23 22 21 40 40 H 1.07996 * 120.75998 * 179.97438 * 24 23 22 41 41 H 1.09005 * 109.46042 * 29.31210 * 27 9 7 42 42 H 1.08999 * 109.46280 * 149.27331 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 1.4001 5 1 3.5477 1.4402 -0.7000 6 1 1.4476 2.6526 -0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0562 -1.2216 0.2687 9 7 1.3687 -2.3633 -0.3390 10 6 0.1969 -2.2917 -1.2319 11 6 0.2307 -3.4269 -2.2712 12 6 1.6511 -3.6332 -2.7574 13 8 2.2770 -4.6123 -1.9386 14 6 2.9061 -4.2210 -0.7741 15 1 3.6643 -3.4726 -1.0046 16 6 3.5700 -5.4348 -0.1206 17 7 4.6384 -5.9341 -0.9899 18 6 5.3664 -7.0049 -0.6159 19 8 5.1363 -7.5565 0.4422 20 6 6.4459 -7.5099 -1.4948 21 7 6.6886 -6.9071 -2.6527 22 6 7.6406 -7.3206 -3.4595 23 6 8.4252 -8.4163 -3.1338 24 6 8.2036 -9.0792 -1.9378 25 6 7.1959 -8.6176 -1.1022 26 17 6.8737 -9.4086 0.4092 27 6 1.8639 -3.6172 0.1982 28 1 -0.4850 0.8400 -0.0004 29 1 -0.7124 -2.3737 -0.6365 30 1 0.1993 -1.3323 -1.7494 31 1 -0.4075 -3.1656 -3.1152 32 1 -0.1331 -4.3463 -1.8124 33 1 2.2006 -2.6943 -2.6892 34 1 1.6370 -3.9767 -3.7917 35 1 3.9908 -5.1443 0.8420 36 1 2.8273 -6.2185 0.0290 37 1 4.8223 -5.4936 -1.8343 38 1 7.8109 -6.8021 -4.3915 39 1 9.2020 -8.7496 -3.8060 40 1 8.8011 -9.9354 -1.6619 41 1 2.3315 -3.4381 1.1664 42 1 1.0340 -4.3135 0.3191 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073865412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:54 Heat of formation + Delta-G solvation = -12.951899 kcal Electronic energy + Delta-G solvation = -27036.737821 eV Core-core repulsion = 23044.142469 eV Total energy + Delta-G solvation = -3992.595352 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.88647 -39.30371 -38.54831 -36.79316 -35.24215 -34.61486 -33.09978 -32.05442 -31.57477 -31.39273 -28.57112 -25.95061 -25.40841 -24.58374 -23.85861 -22.62246 -20.88045 -20.66454 -19.56024 -18.36887 -17.30672 -16.98311 -16.69676 -16.12300 -15.70786 -15.55795 -15.39310 -15.01948 -14.78533 -14.28433 -14.06276 -13.87067 -13.67494 -13.36111 -12.97268 -12.75330 -12.66476 -12.26287 -12.19479 -12.08178 -11.56997 -11.36682 -11.20232 -10.94898 -10.84372 -10.63268 -10.42817 -10.29259 -10.24646 -9.87230 -9.73601 -9.68485 -9.50492 -9.37717 -8.85965 -8.79433 -8.42573 -6.74913 -5.84439 -3.28773 0.18110 0.61406 1.79035 2.59211 3.05231 3.33731 3.41182 3.42986 3.49876 3.86011 4.19471 4.26251 4.38267 4.41180 4.45601 4.79452 4.97382 5.21099 5.34130 5.38216 5.45020 5.56326 5.64737 5.72666 5.88437 5.94693 6.01036 6.05903 6.18843 6.28362 6.36514 6.52622 6.60906 6.72335 6.75337 6.84094 7.21126 7.34395 7.61979 7.65230 7.76933 8.21653 8.25783 8.39375 9.16933 9.81944 10.28454 11.23223 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017554 B = 0.002543 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.739092 B =11006.490338 C =11059.729888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.007 3.993 3 Si 0.901 3.099 4 H -0.286 1.286 5 H -0.279 1.279 6 H -0.289 1.289 7 C -0.266 4.266 8 H 0.066 0.934 9 N -0.591 5.591 10 C 0.177 3.823 11 C -0.177 4.177 12 C 0.089 3.911 13 O -0.395 6.395 14 C 0.067 3.933 15 H 0.052 0.948 16 C 0.131 3.869 17 N -0.696 5.696 18 C 0.559 3.441 19 O -0.518 6.518 20 C 0.094 3.906 21 N -0.442 5.442 22 C 0.101 3.899 23 C -0.142 4.142 24 C -0.077 4.077 25 C -0.042 4.042 26 Cl -0.014 7.014 27 C 0.128 3.872 28 H 0.254 0.746 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.412 0.588 38 H 0.170 0.830 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.056 0.944 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.314 -17.202 -8.186 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.730 3.270 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.215 1.215 7 C -0.396 4.396 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.052 3.948 11 C -0.216 4.216 12 C 0.013 3.987 13 O -0.314 6.314 14 C 0.005 3.995 15 H 0.070 0.930 16 C 0.008 3.992 17 N -0.347 5.347 18 C 0.342 3.658 19 O -0.393 6.393 20 C -0.045 4.045 21 N -0.153 5.153 22 C -0.059 4.059 23 C -0.162 4.162 24 C -0.104 4.104 25 C -0.072 4.072 26 Cl 0.015 6.985 27 C -0.001 4.001 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.248 0.752 38 H 0.187 0.813 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.074 0.926 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.378 -16.938 -7.511 23.453 hybrid contribution 0.996 0.681 -0.107 1.211 sum 15.374 -16.257 -7.618 23.637 Atomic orbital electron populations 1.70071 1.05279 1.25599 1.53554 1.25040 0.95243 0.98436 1.00444 0.86334 0.79185 0.83667 0.77807 1.21305 1.20453 1.21536 1.19198 0.92749 0.85028 1.42587 0.91620 1.43834 1.33370 1.01493 1.52529 1.21054 0.88826 0.95447 0.89438 1.22828 0.97071 1.01295 1.00377 1.22000 0.92948 0.92117 0.91675 1.86081 1.72580 1.37867 1.34894 1.22620 0.95355 0.93833 0.87678 0.92967 1.21517 0.88385 0.96220 0.93099 1.45841 1.34254 1.30190 1.24413 1.17719 0.81489 0.81266 0.85351 1.90879 1.68276 1.57568 1.22582 1.21224 0.97064 0.93224 0.93036 1.67761 1.16808 1.28597 1.02174 1.22981 0.90305 0.93966 0.98667 1.22400 1.00687 0.96281 0.96803 1.21612 0.95600 0.99980 0.93170 1.22044 0.97728 0.95876 0.91582 1.98438 1.94467 1.77897 1.27708 1.21410 0.95035 0.88928 0.94749 0.93567 0.95389 0.90847 0.92140 0.92379 0.92035 0.91244 0.89909 0.90654 0.75165 0.81261 0.83319 0.83142 0.92593 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.64 11.10 55.49 0.62 -25.02 16 2 C 0.01 0.20 4.85 -17.43 -0.08 0.12 16 3 Si 0.90 21.28 29.59 -169.99 -5.03 16.25 16 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.27 -7.06 9.45 -15.06 -0.14 -7.20 16 8 H 0.07 1.72 7.88 -52.49 -0.41 1.31 16 9 N -0.59 -14.31 2.21 -171.80 -0.38 -14.69 16 10 C 0.18 4.15 4.75 -3.00 -0.01 4.13 16 11 C -0.18 -3.32 5.79 -26.98 -0.16 -3.47 16 12 C 0.09 1.58 6.38 36.42 0.23 1.81 16 13 O -0.39 -7.12 9.38 -26.54 -0.25 -7.37 16 14 C 0.07 1.19 2.68 -25.79 -0.07 1.13 16 15 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 16 C 0.13 2.07 5.34 -4.04 -0.02 2.05 16 17 N -0.70 -10.31 5.48 -61.17 -0.34 -10.64 16 18 C 0.56 8.46 7.80 -12.22 -0.10 8.36 16 19 O -0.52 -8.89 13.94 5.35 0.07 -8.81 16 20 C 0.09 1.20 6.75 -82.98 -0.56 0.63 16 21 N -0.44 -4.96 9.54 -9.78 -0.09 -5.05 16 22 C 0.10 0.76 11.18 -17.56 -0.20 0.56 16 23 C -0.14 -0.82 10.11 -39.33 -0.40 -1.22 16 24 C -0.08 -0.57 9.98 -39.27 -0.39 -0.96 16 25 C -0.04 -0.46 6.37 -38.93 -0.25 -0.71 16 26 Cl -0.01 -0.17 26.03 -51.86 -1.35 -1.52 16 27 C 0.13 2.64 5.12 -3.83 -0.02 2.62 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.03 0.72 8.03 -51.93 -0.42 0.30 16 30 H 0.07 1.89 6.43 -51.92 -0.33 1.56 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 1.09 8.01 -51.93 -0.42 0.68 16 33 H 0.06 1.22 7.41 -51.93 -0.38 0.83 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 35 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.41 5.84 7.79 -40.82 -0.32 5.53 16 38 H 0.17 0.74 8.06 -52.48 -0.42 0.32 16 39 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 40 H 0.15 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.06 1.15 7.98 -51.93 -0.41 0.74 16 42 H 0.04 0.90 8.11 -51.93 -0.42 0.48 16 LS Contribution 359.98 15.07 5.42 5.42 Total: -1.00 -31.38 359.98 -9.12 -40.50 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -5.64 Total: 3.10 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -2.16 Total: 7.84 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.19 Total: -55.41 kcal Atomic # 8 Polarization: -16.01 SS G_CDS: -0.17 Total: -16.18 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.25 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -1.35 Total: -1.52 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.38 -9.12 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073865412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.548 kcal (2) G-P(sol) polarization free energy of solvation -31.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds