Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86789 * 120.00414 * 2 1 4 4 H 1.48506 * 109.47329 * 275.54928 * 3 2 1 5 5 H 1.48507 * 109.47410 * 35.54852 * 3 2 1 6 6 H 1.48497 * 109.47547 * 155.54926 * 3 2 1 7 7 C 1.38812 * 119.99369 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 336.55537 * 7 2 1 9 9 N 1.36939 * 120.00148 * 156.56317 * 7 2 1 10 10 C 1.43428 * 120.63139 * 320.50434 * 9 7 2 11 11 C 1.55327 * 116.23629 * 269.33026 * 10 9 7 12 12 C 1.55195 * 108.87434 * 319.46650 * 11 10 9 13 13 O 1.39644 * 110.56847 * 322.14489 * 12 11 10 14 14 C 1.42371 * 108.63774 * 101.16982 * 13 12 11 15 15 H 1.09002 * 108.62075 * 28.42792 * 14 13 12 16 16 C 1.52997 * 108.62205 * 146.34230 * 14 13 12 17 17 N 1.46503 * 109.47189 * 300.00151 * 16 14 13 18 18 C 1.34773 * 120.00338 * 180.02562 * 17 16 14 19 19 O 1.21528 * 119.99610 * 359.97438 * 18 17 16 20 20 C 1.48078 * 120.00203 * 179.97438 * 18 17 16 21 21 N 1.32771 * 119.73672 * 359.97402 * 20 18 17 22 22 C 1.31465 * 121.65774 * 179.97438 * 21 20 18 23 23 C 1.38638 * 120.93881 * 0.02562 * 22 21 20 24 24 C 1.38521 * 119.37594 * 0.02562 * 23 22 21 25 25 C 1.38802 * 118.47559 * 359.97438 * 24 23 22 26 26 Cl 1.73596 * 120.48549 * 180.27587 * 25 24 23 27 27 C 1.46918 * 113.78964 * 267.45431 * 14 13 12 28 28 H 0.97002 * 119.99659 * 0.02562 * 1 2 3 29 29 H 1.08996 * 108.12560 * 147.57622 * 10 9 7 30 30 H 1.08996 * 107.96768 * 30.95850 * 10 9 7 31 31 H 1.08999 * 109.57536 * 199.65027 * 11 10 9 32 32 H 1.09008 * 109.57447 * 79.28072 * 11 10 9 33 33 H 1.08997 * 109.25682 * 201.86223 * 12 11 10 34 34 H 1.08996 * 109.25425 * 82.42319 * 12 11 10 35 35 H 1.08998 * 109.47216 * 179.97438 * 16 14 13 36 36 H 1.09008 * 109.47268 * 59.99920 * 16 14 13 37 37 H 0.96995 * 119.99595 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.53349 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.31505 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.76100 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.99197 * 176.11820 * 27 14 13 42 42 H 1.08998 * 109.99385 * 297.49311 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3806 2.1140 -1.3935 5 1 1.5113 2.6160 0.8140 6 1 3.6015 1.4090 0.5795 7 6 2.0101 -1.2022 0.0005 8 1 1.5369 -2.0987 0.3730 9 7 3.2948 -1.2515 -0.4711 10 6 3.6761 -0.5016 -1.6328 11 6 3.5350 -1.2302 -2.9973 12 6 4.0016 -2.7011 -2.8316 13 8 5.1027 -2.7730 -1.9758 14 6 4.6547 -3.1975 -0.6927 15 1 3.7636 -3.8120 -0.8209 16 6 5.7489 -4.0535 -0.0518 17 7 6.0150 -5.2196 -0.8978 18 6 6.9474 -6.1205 -0.5298 19 8 7.5677 -5.9652 0.5036 20 6 7.2160 -7.2993 -1.3847 21 7 6.5349 -7.4640 -2.5124 22 6 6.7429 -8.4960 -3.2998 23 6 7.6881 -9.4582 -2.9789 24 6 8.4216 -9.3274 -1.8111 25 6 8.1814 -8.2281 -0.9985 26 17 9.0755 -8.0088 0.4733 27 6 4.3311 -2.0909 0.2180 28 1 -0.4850 0.8401 -0.0004 29 1 4.7169 -0.2003 -1.5153 30 1 3.0657 0.4009 -1.6656 31 1 4.1549 -0.7324 -3.7429 32 1 2.4925 -1.2116 -3.3152 33 1 4.2773 -3.1027 -3.8066 34 1 3.1852 -3.2927 -2.4175 35 1 5.4201 -4.3860 0.9328 36 1 6.6595 -3.4630 0.0499 37 1 5.5196 -5.3436 -1.7224 38 1 6.1695 -8.5958 -4.2094 39 1 7.8505 -10.3022 -3.6329 40 1 9.1638 -10.0635 -1.5396 41 1 3.9314 -2.4828 1.1533 42 1 5.2232 -1.4957 0.4130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073865413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -2.228378 kcal Electronic energy + Delta-G solvation = -27162.393863 eV Core-core repulsion = 23170.263518 eV Total energy + Delta-G solvation = -3992.130345 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.95217 -39.64563 -38.73940 -36.84039 -35.32292 -34.81666 -33.18579 -32.17445 -31.75004 -31.53256 -28.94569 -26.36339 -25.53063 -24.61909 -23.88284 -22.46454 -21.20015 -20.78774 -20.04983 -18.47229 -17.35427 -17.06699 -16.78233 -16.04507 -15.80119 -15.69650 -15.44172 -15.36728 -14.62626 -14.43962 -14.18570 -14.00360 -13.94041 -13.43306 -13.13087 -12.81280 -12.73493 -12.44852 -12.36367 -12.29374 -11.89231 -11.65292 -11.57453 -11.21711 -10.77108 -10.50621 -10.49062 -10.37901 -10.33658 -10.18010 -9.74132 -9.64945 -9.56077 -9.42870 -9.00906 -8.94055 -8.51375 -6.83849 -6.06318 -3.50575 0.13036 0.56838 1.74412 2.52843 2.97045 3.31578 3.43868 3.45768 3.53305 3.80088 4.22024 4.26051 4.33362 4.36858 4.49578 4.74867 4.77580 4.91845 5.18167 5.30228 5.38778 5.39447 5.41404 5.62491 5.74114 5.80648 5.87856 5.90146 6.00148 6.05365 6.16663 6.27204 6.46674 6.50015 6.59074 6.62469 6.79979 6.86613 7.15078 7.55071 7.66143 8.02553 8.14158 8.29004 8.94290 9.64998 10.09844 11.08638 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002589 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.758504 B =10812.610224 C =11456.813137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.286 1.286 5 H -0.301 1.301 6 H -0.269 1.269 7 C -0.274 4.274 8 H 0.076 0.924 9 N -0.599 5.599 10 C 0.151 3.849 11 C -0.168 4.168 12 C 0.066 3.934 13 O -0.355 6.355 14 C 0.062 3.938 15 H 0.070 0.930 16 C 0.115 3.885 17 N -0.697 5.697 18 C 0.560 3.440 19 O -0.516 6.516 20 C 0.093 3.907 21 N -0.442 5.442 22 C 0.101 3.899 23 C -0.141 4.141 24 C -0.077 4.077 25 C -0.042 4.042 26 Cl -0.014 7.014 27 C 0.113 3.887 28 H 0.264 0.736 29 H 0.032 0.968 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.411 0.589 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.082 0.918 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.043 -19.651 -7.421 26.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.159 4.159 3 Si 0.709 3.291 4 H -0.213 1.213 5 H -0.229 1.229 6 H -0.193 1.193 7 C -0.403 4.403 8 H 0.094 0.906 9 N -0.321 5.321 10 C 0.024 3.976 11 C -0.209 4.209 12 C -0.012 4.012 13 O -0.273 6.273 14 C 0.003 3.997 15 H 0.088 0.912 16 C -0.009 4.009 17 N -0.348 5.348 18 C 0.343 3.657 19 O -0.391 6.391 20 C -0.046 4.046 21 N -0.154 5.154 22 C -0.059 4.059 23 C -0.161 4.161 24 C -0.103 4.103 25 C -0.072 4.072 26 Cl 0.015 6.985 27 C -0.012 4.012 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.247 0.753 38 H 0.188 0.812 39 H 0.167 0.833 40 H 0.169 0.831 41 H 0.100 0.900 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 15.950 -18.676 -6.718 25.462 hybrid contribution 0.527 0.235 -0.272 0.638 sum 16.477 -18.441 -6.991 25.699 Atomic orbital electron populations 1.69886 1.06095 1.26931 1.50596 1.25517 0.95025 0.97954 0.97424 0.86883 0.80767 0.84432 0.77060 1.21330 1.22870 1.19329 1.18701 0.86537 0.94373 1.40650 0.90624 1.44107 1.07388 1.55305 1.25318 1.20636 0.97384 0.93681 0.85933 1.23501 1.00716 0.96697 1.00013 1.22422 0.88592 0.97021 0.93137 1.87601 1.30981 1.88571 1.20148 1.21988 0.95164 0.96184 0.86393 0.91227 1.21793 0.99739 0.85495 0.93876 1.45749 1.38984 1.23385 1.26642 1.17710 0.80924 0.82053 0.85002 1.90886 1.48897 1.75603 1.23750 1.21185 0.94138 0.95889 0.93433 1.67744 1.23192 1.21868 1.02588 1.22979 0.95474 0.88988 0.98448 1.22408 0.96081 1.00716 0.96868 1.21620 0.99276 0.96102 0.93339 1.22043 0.96449 0.96583 0.92115 1.98440 1.72222 1.96577 1.31246 1.21044 0.92980 0.92242 0.94943 0.92598 0.94922 0.93928 0.92656 0.91565 0.92072 0.92360 0.89949 0.90498 0.75258 0.81223 0.83274 0.83105 0.90007 0.93782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.76 13.97 55.49 0.78 -25.98 16 2 C 0.04 1.20 5.27 -17.43 -0.09 1.11 16 3 Si 0.88 22.21 25.24 -169.99 -4.29 17.92 16 4 H -0.29 -7.07 6.74 56.52 0.38 -6.69 16 5 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 6 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.27 -7.42 9.93 -15.06 -0.15 -7.57 16 8 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 9 N -0.60 -13.85 2.16 -174.51 -0.38 -14.23 16 10 C 0.15 3.33 4.30 -4.43 -0.02 3.31 16 11 C -0.17 -3.14 6.75 -24.33 -0.16 -3.31 16 12 C 0.07 1.09 6.38 38.32 0.24 1.34 16 13 O -0.35 -6.04 9.54 -31.95 -0.30 -6.34 16 14 C 0.06 1.02 2.10 -29.65 -0.06 0.96 16 15 H 0.07 1.17 6.77 -51.93 -0.35 0.82 16 16 C 0.12 1.66 5.24 -4.04 -0.02 1.64 16 17 N -0.70 -9.60 5.42 -61.17 -0.33 -9.93 16 18 C 0.56 8.05 7.80 -12.22 -0.10 7.95 16 19 O -0.52 -8.50 13.95 5.34 0.07 -8.42 16 20 C 0.09 1.13 6.75 -82.98 -0.56 0.57 16 21 N -0.44 -4.68 9.54 -9.78 -0.09 -4.78 16 22 C 0.10 0.71 11.18 -17.56 -0.20 0.51 16 23 C -0.14 -0.75 10.11 -39.33 -0.40 -1.15 16 24 C -0.08 -0.54 9.98 -39.27 -0.39 -0.93 16 25 C -0.04 -0.44 6.37 -38.93 -0.25 -0.69 16 26 Cl -0.01 -0.16 26.04 -51.86 -1.35 -1.51 16 27 C 0.11 2.15 5.58 -4.93 -0.03 2.12 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.03 0.69 7.99 -51.93 -0.41 0.28 16 30 H 0.04 1.03 3.44 -51.93 -0.18 0.85 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.06 1.01 6.66 -51.93 -0.35 0.66 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 37 H 0.41 5.37 7.65 -40.82 -0.31 5.06 16 38 H 0.17 0.66 8.06 -52.49 -0.42 0.24 16 39 H 0.15 0.28 8.06 -52.48 -0.42 -0.14 16 40 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 41 H 0.08 1.50 8.00 -51.93 -0.42 1.09 16 42 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 354.44 15.07 5.34 5.34 Total: -1.00 -32.57 354.44 -8.14 -40.71 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -5.40 Total: 1.37 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: -2.18 Total: 5.86 kcal Atomic # 7 Polarization: -54.89 SS G_CDS: -0.03 Total: -54.92 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: -0.23 Total: -14.76 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.29 Total: 17.92 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.35 Total: -1.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.57 -8.14 -40.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073865413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.482 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds