Wall clock time and date at job start Tue Mar 31 2020 22:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86789 * 120.00414 * 2 1 4 4 H 1.48506 * 109.47329 * 275.54928 * 3 2 1 5 5 H 1.48507 * 109.47410 * 35.54852 * 3 2 1 6 6 H 1.48497 * 109.47547 * 155.54926 * 3 2 1 7 7 C 1.38812 * 119.99369 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00262 * 336.55537 * 7 2 1 9 9 N 1.36939 * 120.00148 * 156.56317 * 7 2 1 10 10 C 1.43428 * 120.63139 * 320.50434 * 9 7 2 11 11 C 1.55327 * 116.23629 * 269.33026 * 10 9 7 12 12 C 1.55195 * 108.87434 * 319.46650 * 11 10 9 13 13 O 1.39644 * 110.56847 * 322.14489 * 12 11 10 14 14 C 1.42371 * 108.63774 * 101.16982 * 13 12 11 15 15 H 1.09002 * 108.62075 * 28.42792 * 14 13 12 16 16 C 1.52997 * 108.62205 * 146.34230 * 14 13 12 17 17 N 1.46503 * 109.47189 * 300.00151 * 16 14 13 18 18 C 1.34773 * 120.00338 * 180.02562 * 17 16 14 19 19 O 1.21528 * 119.99610 * 359.97438 * 18 17 16 20 20 C 1.48078 * 120.00203 * 179.97438 * 18 17 16 21 21 N 1.32771 * 119.73672 * 359.97402 * 20 18 17 22 22 C 1.31465 * 121.65774 * 179.97438 * 21 20 18 23 23 C 1.38638 * 120.93881 * 0.02562 * 22 21 20 24 24 C 1.38521 * 119.37594 * 0.02562 * 23 22 21 25 25 C 1.38802 * 118.47559 * 359.97438 * 24 23 22 26 26 Cl 1.73596 * 120.48549 * 180.27587 * 25 24 23 27 27 C 1.46918 * 113.78964 * 267.45431 * 14 13 12 28 28 H 0.97002 * 119.99659 * 0.02562 * 1 2 3 29 29 H 1.08996 * 108.12560 * 147.57622 * 10 9 7 30 30 H 1.08996 * 107.96768 * 30.95850 * 10 9 7 31 31 H 1.08999 * 109.57536 * 199.65027 * 11 10 9 32 32 H 1.09008 * 109.57447 * 79.28072 * 11 10 9 33 33 H 1.08997 * 109.25682 * 201.86223 * 12 11 10 34 34 H 1.08996 * 109.25425 * 82.42319 * 12 11 10 35 35 H 1.08998 * 109.47216 * 179.97438 * 16 14 13 36 36 H 1.09008 * 109.47268 * 59.99920 * 16 14 13 37 37 H 0.96995 * 119.99595 * 359.97438 * 17 16 14 38 38 H 1.07994 * 119.53349 * 180.02562 * 22 21 20 39 39 H 1.08005 * 120.31505 * 179.97438 * 23 22 21 40 40 H 1.08006 * 120.76100 * 180.02562 * 24 23 22 41 41 H 1.09001 * 109.99197 * 176.11820 * 27 14 13 42 42 H 1.08998 * 109.99385 * 297.49311 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3806 2.1140 -1.3935 5 1 1.5113 2.6160 0.8140 6 1 3.6015 1.4090 0.5795 7 6 2.0101 -1.2022 0.0005 8 1 1.5369 -2.0987 0.3730 9 7 3.2948 -1.2515 -0.4711 10 6 3.6761 -0.5016 -1.6328 11 6 3.5350 -1.2302 -2.9973 12 6 4.0016 -2.7011 -2.8316 13 8 5.1027 -2.7730 -1.9758 14 6 4.6547 -3.1975 -0.6927 15 1 3.7636 -3.8120 -0.8209 16 6 5.7489 -4.0535 -0.0518 17 7 6.0150 -5.2196 -0.8978 18 6 6.9474 -6.1205 -0.5298 19 8 7.5677 -5.9652 0.5036 20 6 7.2160 -7.2993 -1.3847 21 7 6.5349 -7.4640 -2.5124 22 6 6.7429 -8.4960 -3.2998 23 6 7.6881 -9.4582 -2.9789 24 6 8.4216 -9.3274 -1.8111 25 6 8.1814 -8.2281 -0.9985 26 17 9.0755 -8.0088 0.4733 27 6 4.3311 -2.0909 0.2180 28 1 -0.4850 0.8401 -0.0004 29 1 4.7169 -0.2003 -1.5153 30 1 3.0657 0.4009 -1.6656 31 1 4.1549 -0.7324 -3.7429 32 1 2.4925 -1.2116 -3.3152 33 1 4.2773 -3.1027 -3.8066 34 1 3.1852 -3.2927 -2.4175 35 1 5.4201 -4.3860 0.9328 36 1 6.6595 -3.4630 0.0499 37 1 5.5196 -5.3436 -1.7224 38 1 6.1695 -8.5958 -4.2094 39 1 7.8505 -10.3022 -3.6329 40 1 9.1638 -10.0635 -1.5396 41 1 3.9314 -2.4828 1.1533 42 1 5.2232 -1.4957 0.4130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073865413.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:30:56 Heat of formation + Delta-G solvation = -25.358361 kcal Electronic energy + Delta-G solvation = -27163.396854 eV Core-core repulsion = 23170.263518 eV Total energy + Delta-G solvation = -3993.133337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73520 -40.92915 -39.82307 -37.61582 -37.05591 -36.04421 -34.03630 -33.80119 -33.28005 -32.27360 -30.48657 -27.68987 -27.19891 -25.63332 -24.59365 -23.90180 -22.55594 -21.95551 -21.64382 -19.39228 -18.83962 -18.08326 -17.66364 -17.47443 -17.32684 -16.86641 -16.47439 -16.40482 -15.98142 -15.76021 -15.64267 -15.04907 -14.95968 -14.73747 -14.28842 -14.25568 -14.07899 -13.88578 -13.70303 -13.38024 -13.16337 -13.06233 -12.81296 -12.64703 -12.45592 -12.33573 -12.02713 -11.74485 -11.64436 -11.32770 -11.25999 -10.91079 -10.62737 -10.50146 -10.38810 -10.25544 -9.95400 -8.76159 -8.24224 -5.64573 -0.55476 0.00287 1.01390 1.29336 1.39285 1.50849 1.67091 1.98784 2.39901 2.69347 2.91659 2.99875 3.08221 3.21620 3.60758 3.71958 3.88172 3.93925 4.01686 4.20727 4.21980 4.26876 4.36721 4.41181 4.54477 4.57423 4.66537 4.72416 4.76026 4.83263 4.94009 4.97398 5.07502 5.11079 5.15856 5.26504 5.34361 5.42210 5.92416 6.13179 6.29243 6.35288 6.66708 6.95462 7.09792 7.57582 8.05748 8.94848 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022726 B = 0.002589 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.758504 B =10812.610224 C =11456.813137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.009 4.009 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.306 1.306 6 H -0.264 1.264 7 C -0.258 4.258 8 H 0.046 0.954 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.165 4.165 12 C 0.070 3.930 13 O -0.356 6.356 14 C 0.075 3.925 15 H 0.065 0.935 16 C 0.126 3.874 17 N -0.694 5.694 18 C 0.555 3.445 19 O -0.546 6.546 20 C 0.062 3.938 21 N -0.464 5.464 22 C 0.096 3.904 23 C -0.114 4.114 24 C -0.076 4.076 25 C -0.055 4.055 26 Cl -0.036 7.036 27 C 0.112 3.888 28 H 0.264 0.736 29 H 0.043 0.957 30 H 0.020 0.980 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.047 0.953 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.415 0.585 38 H 0.204 0.796 39 H 0.196 0.804 40 H 0.179 0.821 41 H 0.083 0.917 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.063 -21.614 -9.751 29.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.207 4.207 3 Si 0.767 3.233 4 H -0.205 1.205 5 H -0.235 1.235 6 H -0.189 1.189 7 C -0.388 4.388 8 H 0.064 0.936 9 N -0.334 5.334 10 C 0.016 3.984 11 C -0.206 4.206 12 C -0.008 4.008 13 O -0.274 6.274 14 C 0.015 3.985 15 H 0.083 0.917 16 C 0.002 3.998 17 N -0.345 5.345 18 C 0.340 3.660 19 O -0.424 6.424 20 C -0.076 4.076 21 N -0.176 5.176 22 C -0.064 4.064 23 C -0.134 4.134 24 C -0.102 4.102 25 C -0.086 4.086 26 Cl -0.007 7.007 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.099 0.901 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.252 0.748 38 H 0.220 0.780 39 H 0.213 0.787 40 H 0.196 0.804 41 H 0.101 0.899 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 18.006 -20.647 -9.067 28.857 hybrid contribution -0.081 0.674 0.334 0.757 sum 17.924 -19.973 -8.732 28.222 Atomic orbital electron populations 1.69990 1.07530 1.27522 1.53319 1.26051 0.95512 1.00872 0.98251 0.85922 0.79401 0.80789 0.77183 1.20524 1.23472 1.18890 1.18596 0.88086 0.93151 1.38957 0.93637 1.44204 1.06879 1.55967 1.26375 1.20734 0.97241 0.93271 0.87124 1.23451 1.00638 0.98088 0.98422 1.22441 0.88273 0.95478 0.94586 1.87610 1.31043 1.88537 1.20178 1.21708 0.95692 0.95176 0.85927 0.91734 1.21557 0.98685 0.85633 0.93949 1.45672 1.39150 1.23092 1.26626 1.18157 0.80234 0.82617 0.84982 1.90856 1.49906 1.76494 1.25127 1.20832 0.96259 0.95941 0.94540 1.67694 1.23616 1.23719 1.02554 1.23684 0.95823 0.88142 0.98717 1.22927 0.93586 1.00857 0.96026 1.22034 0.99804 0.95231 0.93150 1.22257 0.96488 0.97790 0.92069 1.98426 1.72666 1.96783 1.32803 1.21190 0.92042 0.92514 0.95478 0.92697 0.93909 0.96240 0.90113 0.92936 0.88690 0.93479 0.89661 0.90940 0.74797 0.77956 0.78693 0.80388 0.89896 0.92793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.79 13.97 21.65 0.30 -57.49 16 2 C -0.01 -0.53 5.27 84.86 0.45 -0.09 16 3 Si 0.94 46.54 25.24 68.60 1.73 48.27 16 4 H -0.28 -13.31 6.74 99.48 0.67 -12.64 16 5 H -0.31 -15.32 7.11 99.48 0.71 -14.61 16 6 H -0.26 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.26 -14.25 9.93 84.03 0.83 -13.42 16 8 H 0.05 2.75 8.06 -2.91 -0.02 2.72 16 9 N -0.61 -28.13 2.16 -706.01 -1.52 -29.65 16 10 C 0.14 6.14 4.30 87.75 0.38 6.52 16 11 C -0.17 -5.89 6.75 32.15 0.22 -5.67 16 12 C 0.07 2.17 6.38 72.73 0.46 2.63 16 13 O -0.36 -11.43 9.54 -137.23 -1.31 -12.73 16 14 C 0.07 2.38 2.10 28.71 0.06 2.44 16 15 H 0.06 2.15 6.77 -2.39 -0.02 2.14 16 16 C 0.13 3.60 5.24 86.38 0.45 4.05 16 17 N -0.69 -18.87 5.42 -465.74 -2.52 -21.39 16 18 C 0.56 16.01 7.80 86.86 0.68 16.69 16 19 O -0.55 -18.36 13.95 -3.80 -0.05 -18.42 16 20 C 0.06 1.45 6.75 41.90 0.28 1.73 16 21 N -0.46 -8.94 9.54 -184.86 -1.76 -10.70 16 22 C 0.10 1.00 11.18 84.84 0.95 1.94 16 23 C -0.11 -0.69 10.11 22.43 0.23 -0.46 16 24 C -0.08 -0.82 9.98 22.47 0.22 -0.59 16 25 C -0.06 -1.11 6.37 22.69 0.14 -0.96 16 26 Cl -0.04 -0.83 26.04 -2.72 -0.07 -0.90 16 27 C 0.11 4.19 5.58 83.79 0.47 4.65 16 28 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 29 H 0.04 1.73 7.99 -2.39 -0.02 1.71 16 30 H 0.02 0.93 3.44 -2.39 -0.01 0.92 16 31 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 33 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 1.58 6.66 -2.39 -0.02 1.56 16 35 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 37 H 0.42 10.51 7.65 -92.71 -0.71 9.80 16 38 H 0.20 0.62 8.06 -2.91 -0.02 0.59 16 39 H 0.20 -0.58 8.06 -2.91 -0.02 -0.60 16 40 H 0.18 0.87 8.06 -2.91 -0.02 0.84 16 41 H 0.08 3.06 8.00 -2.39 -0.02 3.04 16 42 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -73.26 354.44 0.93 -72.33 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 0.32 Total: 11.21 kcal Atomic # 6 Polarization: 13.64 SS G_CDS: 5.83 Total: 19.47 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -5.51 Total: -119.23 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -1.36 Total: -31.15 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.73 Total: 48.27 kcal Atomic # 17 Polarization: -0.83 SS G_CDS: -0.07 Total: -0.90 kcal Total: -73.26 0.93 -72.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073865413.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.972 kcal (2) G-P(sol) polarization free energy of solvation -73.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds