Wall clock time and date at job start Tue Mar 31 2020 22:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47216 * 269.99836 * 3 2 1 5 5 H 1.48498 * 109.47086 * 29.99979 * 3 2 1 6 6 H 1.48506 * 109.47266 * 149.99931 * 3 2 1 7 7 C 1.38812 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 195.54942 * 7 2 1 9 9 N 1.36934 * 120.00243 * 15.55844 * 7 2 1 10 10 C 1.47355 * 121.30089 * 26.91390 * 9 7 2 11 11 C 1.53200 * 108.79561 * 129.74080 * 10 9 7 12 12 O 1.43146 * 109.73818 * 51.21733 * 11 10 9 13 13 C 1.42594 * 113.63910 * 298.31189 * 12 11 10 14 14 H 1.09008 * 109.34090 * 304.39159 * 13 12 11 15 15 C 1.52784 * 111.11998 * 183.60712 * 13 12 11 16 16 C 1.53369 * 108.81397 * 177.44647 * 15 13 12 17 17 N 1.46830 * 109.25201 * 53.82598 * 16 15 13 18 18 C 1.34778 * 120.40926 * 127.78759 * 17 16 15 19 19 O 1.21694 * 120.00299 * 179.97438 * 18 17 16 20 20 C 1.46670 * 119.99904 * 359.92154 * 18 17 16 21 21 C 1.37894 * 126.22415 * 205.37301 * 20 18 17 22 22 C 1.39891 * 107.09746 * 179.97438 * 21 20 18 23 23 Cl 1.73598 * 126.07506 * 180.02562 * 22 21 20 24 24 C 1.35518 * 107.84600 * 0.02562 * 22 21 20 25 25 N 1.35620 * 108.85655 * 359.76756 * 24 22 21 26 26 H 0.97003 * 125.68169 * 180.27086 * 25 24 22 27 27 C 1.47132 * 119.18956 * 307.76379 * 17 16 15 28 28 C 1.46872 * 121.30251 * 206.89659 * 9 7 2 29 29 H 1.09006 * 110.21166 * 112.03183 * 28 9 7 30 30 H 0.96999 * 120.00435 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58034 * 249.53430 * 10 9 7 32 32 H 1.08997 * 109.58175 * 9.94771 * 10 9 7 33 33 H 1.09003 * 109.42372 * 291.13786 * 11 10 9 34 34 H 1.08996 * 109.42381 * 171.30337 * 11 10 9 35 35 H 1.09008 * 109.57713 * 297.24407 * 15 13 12 36 36 H 1.09002 * 109.58263 * 57.64318 * 15 13 12 37 37 H 1.09002 * 109.50447 * 173.75895 * 16 15 13 38 38 H 1.08996 * 109.50809 * 293.84660 * 16 15 13 39 39 H 1.07995 * 126.45392 * 359.93342 * 21 20 18 40 40 H 1.08006 * 125.57224 * 179.97438 * 24 22 21 41 41 H 1.08993 * 109.73036 * 172.88751 * 27 17 16 42 42 H 1.09005 * 109.72511 * 293.55992 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0605 -1.2192 0.2513 9 7 1.3632 -2.3665 -0.3170 10 6 0.1794 -2.3697 -1.1945 11 6 0.3832 -3.4163 -2.2945 12 8 0.7523 -4.6687 -1.7079 13 6 1.9793 -4.6209 -0.9828 14 1 2.7701 -4.2507 -1.6354 15 6 2.3626 -6.0035 -0.4576 16 6 3.7166 -5.9037 0.2558 17 7 3.6492 -4.8511 1.2772 18 6 4.0149 -5.1097 2.5484 19 8 3.9565 -4.2316 3.3890 20 6 4.4821 -6.4497 2.9190 21 6 4.4241 -7.0143 4.1757 22 6 4.9754 -8.2961 4.0765 23 17 5.1459 -9.4386 5.3724 24 6 5.3528 -8.4874 2.7891 25 7 5.0538 -7.3741 2.0746 26 1 5.2168 -7.2495 1.1265 27 6 3.1780 -3.5104 0.8960 28 6 1.8223 -3.6609 0.2033 29 1 1.0937 -4.0638 0.9070 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7068 -2.6203 -0.6114 32 1 0.0561 -1.3850 -1.6453 33 1 1.1732 -3.0847 -2.9684 34 1 -0.5434 -3.5377 -2.8555 35 1 1.6044 -6.3507 0.2445 36 1 2.4391 -6.7024 -1.2906 37 1 3.9490 -6.8571 0.7303 38 1 4.4928 -5.6592 -0.4692 39 1 4.0283 -6.5534 5.0686 40 1 5.8130 -9.3817 2.3955 41 1 3.0695 -2.8915 1.7866 42 1 3.8915 -3.0504 0.2122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074159305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:56 Heat of formation + Delta-G solvation = 18.125746 kcal Electronic energy + Delta-G solvation = -28043.228731 eV Core-core repulsion = 24051.981007 eV Total energy + Delta-G solvation = -3991.247724 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.86034 -39.83895 -38.45310 -36.60051 -36.27127 -34.79033 -32.19654 -31.57661 -31.21446 -30.16799 -29.30019 -27.11762 -25.52417 -24.17235 -22.88467 -22.08909 -21.24403 -20.81035 -20.33453 -19.72810 -17.87270 -16.90558 -16.66746 -15.78818 -15.53197 -15.51453 -15.15302 -14.66769 -14.62482 -14.44863 -14.07213 -13.79737 -13.71420 -13.37057 -13.18777 -13.10827 -12.93806 -12.73983 -12.57318 -12.07138 -11.93158 -11.47691 -11.09983 -11.04025 -11.01185 -10.92332 -10.69027 -10.35607 -10.25897 -10.06958 -9.97586 -9.69144 -9.13136 -9.08439 -8.64049 -8.58902 -8.42024 -6.80560 -5.88895 -3.34727 1.24778 1.96431 2.22571 2.73098 2.95463 3.29841 3.32614 3.40260 3.41343 4.13731 4.32993 4.38780 4.57210 4.64980 4.91729 4.97186 5.09494 5.20783 5.26699 5.32372 5.37894 5.53502 5.62527 5.67201 5.77256 5.79673 5.99813 6.03461 6.13359 6.19444 6.24664 6.33050 6.37076 6.50331 6.59549 6.76891 6.89518 7.05682 7.38030 7.45118 7.65469 7.80815 8.13747 8.26525 9.04148 9.67497 10.24568 11.19149 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017019 B = 0.003083 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.841995 B = 9078.664203 C =10190.096337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.008 3.992 3 Si 0.905 3.095 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.587 5.587 10 C 0.142 3.858 11 C 0.039 3.961 12 O -0.388 6.388 13 C 0.077 3.923 14 H 0.053 0.947 15 C -0.122 4.122 16 C 0.090 3.910 17 N -0.607 5.607 18 C 0.585 3.415 19 O -0.517 6.517 20 C -0.025 4.025 21 C -0.101 4.101 22 C -0.123 4.123 23 Cl -0.051 7.051 24 C 0.029 3.971 25 N -0.535 5.535 26 H 0.428 0.572 27 C 0.124 3.876 28 C 0.136 3.864 29 H 0.038 0.962 30 H 0.256 0.744 31 H 0.028 0.972 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.106 0.894 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.791 -18.357 -0.389 20.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.192 4.192 3 Si 0.734 3.266 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.202 1.202 7 C -0.390 4.390 8 H 0.091 0.909 9 N -0.311 5.311 10 C 0.017 3.983 11 C -0.039 4.039 12 O -0.308 6.308 13 C 0.017 3.983 14 H 0.071 0.929 15 C -0.161 4.161 16 C -0.034 4.034 17 N -0.341 5.341 18 C 0.373 3.627 19 O -0.392 6.392 20 C -0.138 4.138 21 C -0.127 4.127 22 C -0.156 4.156 23 Cl -0.022 7.022 24 C -0.107 4.107 25 N -0.139 5.139 26 H 0.274 0.726 27 C 0.003 3.997 28 C 0.028 3.972 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.047 0.953 32 H 0.115 0.885 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.093 0.907 39 H 0.174 0.826 40 H 0.197 0.803 41 H 0.124 0.876 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.570 -17.869 -0.006 20.270 hybrid contribution 0.494 0.956 -0.387 1.144 sum 10.063 -16.913 -0.393 19.684 Atomic orbital electron populations 1.70011 1.05306 1.25789 1.53263 1.25071 0.95342 0.98513 1.00256 0.86252 0.79239 0.83410 0.77681 1.21365 1.21580 1.20206 1.19141 0.92330 0.84029 1.43513 0.90946 1.44024 1.32973 1.00737 1.53407 1.21458 0.88812 0.98057 0.90011 1.23349 0.98943 0.85107 0.96462 1.87739 1.40039 1.32966 1.70009 1.22401 0.87086 0.94622 0.94179 0.92936 1.21810 0.96319 0.97525 1.00470 1.22214 0.98681 0.91284 0.91250 1.48203 1.64943 1.12971 1.07957 1.17021 0.78036 0.85466 0.82223 1.90890 1.54321 1.45143 1.48826 1.20445 1.10367 0.92253 0.90775 1.21160 1.02308 0.92863 0.96385 1.19958 1.12102 0.93711 0.89855 1.98327 1.96980 1.58920 1.47986 1.21777 1.05411 0.92510 0.91025 1.42925 1.47373 1.12453 1.11174 0.72564 1.21854 0.95311 0.80769 1.01728 1.21292 0.94035 0.88792 0.93045 0.94439 0.93403 0.95338 0.88536 0.94083 0.89979 0.90519 0.90065 0.89382 0.90679 0.82553 0.80284 0.87570 0.90622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.45 11.13 55.49 0.62 -24.83 16 2 C 0.01 0.21 4.99 -17.43 -0.09 0.12 16 3 Si 0.90 21.24 29.58 -169.99 -5.03 16.21 16 4 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.26 -6.82 8.89 -15.06 -0.13 -6.95 16 8 H 0.07 1.83 6.26 -52.49 -0.33 1.51 16 9 N -0.59 -14.18 3.04 -164.35 -0.50 -14.68 16 10 C 0.14 3.31 5.43 -3.47 -0.02 3.29 16 11 C 0.04 0.74 6.96 37.26 0.26 1.00 16 12 O -0.39 -7.33 10.49 -35.23 -0.37 -7.69 16 13 C 0.08 1.31 2.48 -26.63 -0.07 1.25 16 14 H 0.05 0.90 8.13 -51.92 -0.42 0.48 16 15 C -0.12 -1.54 5.82 -26.65 -0.16 -1.69 16 16 C 0.09 0.94 5.51 -3.67 -0.02 0.92 16 17 N -0.61 -9.01 2.98 -174.24 -0.52 -9.53 16 18 C 0.59 9.31 7.63 -12.86 -0.10 9.21 16 19 O -0.52 -10.37 16.38 5.19 0.09 -10.29 16 20 C -0.03 -0.31 6.46 -81.98 -0.53 -0.84 16 21 C -0.10 -1.25 10.74 -39.09 -0.42 -1.67 16 22 C -0.12 -1.26 6.66 -39.93 -0.27 -1.53 16 23 Cl -0.05 -0.49 29.30 -51.86 -1.52 -2.01 16 24 C 0.03 0.23 11.87 -16.85 -0.20 0.03 16 25 N -0.53 -4.46 4.81 -9.35 -0.04 -4.51 16 26 H 0.43 2.43 6.11 -40.82 -0.25 2.18 16 27 C 0.12 2.32 4.48 -3.70 -0.02 2.31 16 28 C 0.14 2.79 3.03 -67.53 -0.20 2.59 16 29 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 31 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 2.45 6.19 -51.93 -0.32 2.13 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.70 3.66 -51.95 -0.19 0.51 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 40 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.11 2.32 6.79 -51.93 -0.35 1.97 16 42 H 0.08 1.39 7.38 -51.93 -0.38 1.01 16 LS Contribution 345.90 15.07 5.21 5.21 Total: -1.00 -32.08 345.90 -9.21 -41.29 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -5.19 Total: 2.80 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.96 Total: 8.02 kcal Atomic # 7 Polarization: -53.09 SS G_CDS: -0.45 Total: -53.54 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.28 Total: -17.98 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.21 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.52 Total: -2.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.08 -9.21 -41.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074159305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -32.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds