Wall clock time and date at job start Tue Mar 31 2020 22:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31611 * 1 3 3 Si 1.86799 * 120.00091 * 2 1 4 4 H 1.48500 * 109.47216 * 269.99836 * 3 2 1 5 5 H 1.48498 * 109.47086 * 29.99979 * 3 2 1 6 6 H 1.48506 * 109.47266 * 149.99931 * 3 2 1 7 7 C 1.38812 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00020 * 195.54942 * 7 2 1 9 9 N 1.36934 * 120.00243 * 15.55844 * 7 2 1 10 10 C 1.47355 * 121.30089 * 26.91390 * 9 7 2 11 11 C 1.53200 * 108.79561 * 129.74080 * 10 9 7 12 12 O 1.43146 * 109.73818 * 51.21733 * 11 10 9 13 13 C 1.42594 * 113.63910 * 298.31189 * 12 11 10 14 14 H 1.09008 * 109.34090 * 304.39159 * 13 12 11 15 15 C 1.52784 * 111.11998 * 183.60712 * 13 12 11 16 16 C 1.53369 * 108.81397 * 177.44647 * 15 13 12 17 17 N 1.46830 * 109.25201 * 53.82598 * 16 15 13 18 18 C 1.34778 * 120.40926 * 127.78759 * 17 16 15 19 19 O 1.21694 * 120.00299 * 179.97438 * 18 17 16 20 20 C 1.46670 * 119.99904 * 359.92154 * 18 17 16 21 21 C 1.37894 * 126.22415 * 205.37301 * 20 18 17 22 22 C 1.39891 * 107.09746 * 179.97438 * 21 20 18 23 23 Cl 1.73598 * 126.07506 * 180.02562 * 22 21 20 24 24 C 1.35518 * 107.84600 * 0.02562 * 22 21 20 25 25 N 1.35620 * 108.85655 * 359.76756 * 24 22 21 26 26 H 0.97003 * 125.68169 * 180.27086 * 25 24 22 27 27 C 1.47132 * 119.18956 * 307.76379 * 17 16 15 28 28 C 1.46872 * 121.30251 * 206.89659 * 9 7 2 29 29 H 1.09006 * 110.21166 * 112.03183 * 28 9 7 30 30 H 0.96999 * 120.00435 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58034 * 249.53430 * 10 9 7 32 32 H 1.08997 * 109.58175 * 9.94771 * 10 9 7 33 33 H 1.09003 * 109.42372 * 291.13786 * 11 10 9 34 34 H 1.08996 * 109.42381 * 171.30337 * 11 10 9 35 35 H 1.09008 * 109.57713 * 297.24407 * 15 13 12 36 36 H 1.09002 * 109.58263 * 57.64318 * 15 13 12 37 37 H 1.09002 * 109.50447 * 173.75895 * 16 15 13 38 38 H 1.08996 * 109.50809 * 293.84660 * 16 15 13 39 39 H 1.07995 * 126.45392 * 359.93342 * 21 20 18 40 40 H 1.08006 * 125.57224 * 179.97438 * 24 22 21 41 41 H 1.08993 * 109.73036 * 172.88751 * 27 17 16 42 42 H 1.09005 * 109.72511 * 293.55992 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0605 -1.2192 0.2513 9 7 1.3632 -2.3665 -0.3170 10 6 0.1794 -2.3697 -1.1945 11 6 0.3832 -3.4163 -2.2945 12 8 0.7523 -4.6687 -1.7079 13 6 1.9793 -4.6209 -0.9828 14 1 2.7701 -4.2507 -1.6354 15 6 2.3626 -6.0035 -0.4576 16 6 3.7166 -5.9037 0.2558 17 7 3.6492 -4.8511 1.2772 18 6 4.0149 -5.1097 2.5484 19 8 3.9565 -4.2316 3.3890 20 6 4.4821 -6.4497 2.9190 21 6 4.4241 -7.0143 4.1757 22 6 4.9754 -8.2961 4.0765 23 17 5.1459 -9.4386 5.3724 24 6 5.3528 -8.4874 2.7891 25 7 5.0538 -7.3741 2.0746 26 1 5.2168 -7.2495 1.1265 27 6 3.1780 -3.5104 0.8960 28 6 1.8223 -3.6609 0.2033 29 1 1.0937 -4.0638 0.9070 30 1 -0.4851 0.8400 -0.0004 31 1 -0.7068 -2.6203 -0.6114 32 1 0.0561 -1.3850 -1.6453 33 1 1.1732 -3.0847 -2.9684 34 1 -0.5434 -3.5377 -2.8555 35 1 1.6044 -6.3507 0.2445 36 1 2.4391 -6.7024 -1.2906 37 1 3.9490 -6.8571 0.7303 38 1 4.4928 -5.6592 -0.4692 39 1 4.0283 -6.5534 5.0686 40 1 5.8130 -9.3817 2.3955 41 1 3.0695 -2.8915 1.7866 42 1 3.8915 -3.0504 0.2122 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074159305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:55 Heat of formation + Delta-G solvation = -4.021276 kcal Electronic energy + Delta-G solvation = -28044.189098 eV Core-core repulsion = 24051.981007 eV Total energy + Delta-G solvation = -3992.208091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.75448 -41.13870 -39.85287 -37.63460 -37.30869 -36.57319 -33.70147 -33.09122 -32.28692 -31.49436 -30.38493 -28.83607 -26.93126 -25.68629 -24.23394 -23.45698 -22.31032 -21.96492 -21.40471 -21.15611 -18.99912 -18.66973 -17.87241 -17.22513 -16.96500 -16.72784 -16.61987 -16.20304 -15.74789 -15.59521 -15.38645 -15.23015 -14.96460 -14.71155 -14.68300 -14.33579 -14.01042 -13.89365 -13.87979 -13.38246 -13.03364 -12.86924 -12.84527 -12.69107 -12.46196 -12.33398 -12.07796 -11.95340 -11.80149 -11.79634 -11.30527 -11.24763 -10.78385 -10.55051 -10.03781 -9.82375 -9.27373 -8.78079 -7.93738 -5.42523 0.31264 1.22878 1.42565 1.43838 1.45284 1.53674 1.62006 1.97377 2.28620 2.45157 2.81061 3.21279 3.35465 3.39994 3.74204 3.79293 3.96119 4.06030 4.15007 4.15594 4.19211 4.28620 4.33723 4.46934 4.51312 4.52081 4.56130 4.72890 4.81440 4.86181 4.94971 5.03279 5.08813 5.19986 5.32244 5.32863 5.50392 5.53367 5.59606 6.19082 6.22713 6.29090 6.31552 6.92040 7.01876 7.69490 8.24360 9.12470 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017019 B = 0.003083 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.841995 B = 9078.664203 C =10190.096337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.048 4.048 3 Si 0.967 3.033 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.271 1.271 7 C -0.262 4.262 8 H 0.077 0.923 9 N -0.604 5.604 10 C 0.146 3.854 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.081 3.919 14 H 0.063 0.937 15 C -0.115 4.115 16 C 0.088 3.912 17 N -0.605 5.605 18 C 0.582 3.418 19 O -0.575 6.575 20 C -0.048 4.048 21 C -0.112 4.112 22 C -0.147 4.147 23 Cl -0.047 7.047 24 C 0.074 3.926 25 N -0.516 5.516 26 H 0.444 0.556 27 C 0.140 3.860 28 C 0.132 3.868 29 H 0.001 0.999 30 H 0.251 0.749 31 H -0.006 1.006 32 H 0.071 0.929 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.120 0.880 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.229 0.771 41 H 0.062 0.938 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.464 -21.802 -2.556 25.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.244 4.244 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.195 1.195 7 C -0.392 4.392 8 H 0.095 0.905 9 N -0.329 5.329 10 C 0.020 3.980 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.022 3.978 14 H 0.081 0.919 15 C -0.153 4.153 16 C -0.034 4.034 17 N -0.337 5.337 18 C 0.372 3.628 19 O -0.455 6.455 20 C -0.161 4.161 21 C -0.139 4.139 22 C -0.180 4.180 23 Cl -0.019 7.019 24 C -0.064 4.064 25 N -0.122 5.122 26 H 0.294 0.706 27 C 0.017 3.983 28 C 0.025 3.975 29 H 0.019 0.981 30 H 0.060 0.940 31 H 0.012 0.988 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.157 0.843 40 H 0.246 0.754 41 H 0.080 0.920 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.266 -21.367 -2.227 24.738 hybrid contribution -0.344 1.913 0.385 1.981 sum 11.923 -19.455 -1.842 22.892 Atomic orbital electron populations 1.70172 1.06706 1.26016 1.55230 1.25838 0.96078 1.01591 1.00877 0.85267 0.77981 0.79409 0.77823 1.20412 1.22438 1.19539 1.19474 0.92715 0.84943 1.42029 0.90511 1.44323 1.32978 1.01685 1.53956 1.21324 0.87511 0.98413 0.90758 1.23173 1.00755 0.83833 0.94719 1.87748 1.41016 1.32332 1.69957 1.22504 0.86716 0.96391 0.92232 0.91864 1.21851 0.96807 0.95152 1.01519 1.22610 0.98657 0.91273 0.90831 1.48208 1.64160 1.12457 1.08869 1.17511 0.77192 0.86344 0.81740 1.90852 1.56885 1.47277 1.50451 1.19717 1.13218 0.91505 0.91676 1.21216 1.02438 0.94215 0.96056 1.20048 1.13443 0.93166 0.91299 1.98330 1.96998 1.58408 1.48174 1.22492 1.01643 0.92687 0.89627 1.42811 1.46221 1.11542 1.11602 0.70649 1.21362 0.94652 0.82784 0.99531 1.21454 0.93764 0.87979 0.94341 0.98087 0.93967 0.98793 0.91036 0.92886 0.87351 0.91905 0.85996 0.86250 0.87040 0.84314 0.75437 0.91971 0.90037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.52 11.13 21.65 0.24 -55.28 16 2 C -0.05 -2.68 4.99 84.86 0.42 -2.26 16 3 Si 0.97 44.94 29.58 68.60 2.03 46.97 16 4 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.26 -14.17 8.89 84.03 0.75 -13.42 16 8 H 0.08 4.00 6.26 -2.91 -0.02 3.98 16 9 N -0.60 -30.32 3.04 -673.88 -2.05 -32.37 16 10 C 0.15 7.04 5.43 86.28 0.47 7.51 16 11 C 0.05 1.95 6.96 72.05 0.50 2.45 16 12 O -0.39 -14.06 10.49 -148.98 -1.56 -15.62 16 13 C 0.08 2.61 2.48 30.66 0.08 2.69 16 14 H 0.06 1.96 8.13 -2.38 -0.02 1.94 16 15 C -0.11 -2.47 5.82 30.65 0.18 -2.29 16 16 C 0.09 1.49 5.51 86.44 0.48 1.97 16 17 N -0.60 -17.53 2.98 -823.39 -2.45 -19.99 16 18 C 0.58 18.80 7.63 86.44 0.66 19.46 16 19 O -0.58 -24.68 16.38 -4.33 -0.07 -24.76 16 20 C -0.05 -1.13 6.46 40.35 0.26 -0.87 16 21 C -0.11 -2.71 10.74 22.59 0.24 -2.47 16 22 C -0.15 -2.62 6.66 22.04 0.15 -2.48 16 23 Cl -0.05 -0.81 29.30 -2.72 -0.08 -0.89 16 24 C 0.07 0.77 11.87 83.48 0.99 1.76 16 25 N -0.52 -6.34 4.81 -183.50 -0.88 -7.22 16 26 H 0.44 2.46 6.11 -92.71 -0.57 1.90 16 27 C 0.14 5.37 4.48 86.25 0.39 5.75 16 28 C 0.13 5.55 3.03 45.05 0.14 5.69 16 29 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 30 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 31 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 32 H 0.07 3.80 6.19 -2.39 -0.01 3.79 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 35 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 36 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.12 1.29 3.66 -2.43 -0.01 1.28 16 38 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.23 0.21 8.06 -2.91 -0.02 0.19 16 41 H 0.06 2.93 6.79 -2.39 -0.02 2.91 16 42 H 0.08 3.01 7.38 -2.38 -0.02 2.99 16 Total: -1.00 -77.77 345.90 1.37 -76.40 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 0.51 Total: 9.27 kcal Atomic # 6 Polarization: 17.80 SS G_CDS: 5.69 Total: 23.49 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -5.15 Total: -114.86 kcal Atomic # 8 Polarization: -38.74 SS G_CDS: -1.63 Total: -40.38 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -77.77 1.37 -76.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074159305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.382 kcal (2) G-P(sol) polarization free energy of solvation -77.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds