Wall clock time and date at job start Tue Mar 31 2020 22:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46920 * 274.81050 * 3 2 1 5 5 H 1.48498 * 109.47231 * 34.81420 * 3 2 1 6 6 H 1.48501 * 109.46794 * 154.81514 * 3 2 1 7 7 C 1.38811 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00167 * 341.52068 * 7 2 1 9 9 N 1.36931 * 119.99946 * 161.52246 * 7 2 1 10 10 C 1.47171 * 121.22841 * 331.02695 * 9 7 2 11 11 C 1.53229 * 108.69945 * 230.96801 * 10 9 7 12 12 O 1.43074 * 109.45304 * 308.42797 * 11 10 9 13 13 C 1.42694 * 113.87556 * 61.63343 * 12 11 10 14 14 H 1.09003 * 108.92887 * 55.59868 * 13 12 11 15 15 C 1.52508 * 110.61701 * 174.65790 * 13 12 11 16 16 C 1.53158 * 109.79137 * 61.27448 * 15 13 12 17 17 N 1.46976 * 108.44723 * 54.52371 * 16 15 13 18 18 C 1.34770 * 120.72089 * 125.48908 * 17 16 15 19 19 O 1.21697 * 120.00058 * 181.36515 * 18 17 16 20 20 C 1.46671 * 120.00256 * 1.36018 * 18 17 16 21 21 C 1.37894 * 126.22192 * 204.83690 * 20 18 17 22 22 C 1.39892 * 107.09195 * 179.90279 * 21 20 18 23 23 Cl 1.73605 * 126.07349 * 180.17038 * 22 21 20 24 24 C 1.35511 * 107.85171 * 0.36255 * 22 21 20 25 25 N 1.35631 * 108.85345 * 359.77541 * 24 22 21 26 26 H 0.97002 * 125.67603 * 180.02562 * 25 24 22 27 27 C 1.46801 * 118.55736 * 305.45959 * 17 16 15 28 28 C 1.47601 * 121.22760 * 151.04650 * 9 7 2 29 29 H 1.08999 * 110.31499 * 7.65611 * 28 9 7 30 30 H 0.97001 * 119.99867 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.59981 * 111.20055 * 10 9 7 32 32 H 1.09008 * 109.59957 * 350.72519 * 10 9 7 33 33 H 1.08999 * 109.47293 * 188.44058 * 11 10 9 34 34 H 1.08994 * 109.47796 * 68.42758 * 11 10 9 35 35 H 1.08999 * 109.41581 * 181.36932 * 15 13 12 36 36 H 1.08998 * 109.41903 * 301.17481 * 15 13 12 37 37 H 1.09001 * 109.64072 * 294.83178 * 16 15 13 38 38 H 1.09001 * 109.63960 * 174.21000 * 16 15 13 39 39 H 1.08002 * 126.45555 * 0.03578 * 21 20 18 40 40 H 1.07997 * 125.57509 * 179.77728 * 24 22 21 41 41 H 1.09002 * 109.52053 * 294.38997 * 27 17 16 42 42 H 1.08996 * 109.57321 * 174.23347 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4129 0.5958 7 6 2.0102 -1.2022 -0.0005 8 1 1.5119 -2.1135 0.2955 9 7 3.3266 -1.2326 -0.3764 10 6 3.8682 -0.2590 -1.3380 11 6 4.6141 -1.0194 -2.4396 12 8 5.5508 -1.9226 -1.8447 13 6 4.9483 -2.9187 -1.0194 14 1 4.2035 -3.4589 -1.6038 15 6 5.9938 -3.9161 -0.5316 16 6 7.0496 -3.1914 0.3086 17 7 6.3658 -2.4589 1.3838 18 6 6.7110 -2.6474 2.6729 19 8 6.1193 -2.0526 3.5544 20 6 7.7996 -3.5695 3.0133 21 6 7.9633 -4.2293 4.2131 22 6 9.1248 -5.0012 4.1026 23 17 9.7873 -6.0327 5.3317 24 6 9.6431 -4.7973 2.8673 25 7 8.8466 -3.9290 2.1956 26 1 8.9908 -3.6140 1.2895 27 6 5.2992 -1.5170 1.0231 28 6 4.2545 -2.2433 0.1676 29 1 3.7085 -2.9806 0.7561 30 1 -0.4850 0.8401 0.0004 31 1 4.5569 0.4144 -0.8279 32 1 3.0516 0.3137 -1.7778 33 1 5.1458 -0.3106 -3.0743 34 1 3.8996 -1.5810 -3.0412 35 1 5.5095 -4.6807 0.0759 36 1 6.4739 -4.3866 -1.3896 37 1 7.6001 -2.4910 -0.3194 38 1 7.7368 -3.9190 0.7405 39 1 7.3156 -4.1643 5.0748 40 1 10.5433 -5.2519 2.4808 41 1 5.7219 -0.6879 0.4557 42 1 4.8272 -1.1356 1.9285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074159306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:00 Heat of formation + Delta-G solvation = 21.743937 kcal Electronic energy + Delta-G solvation = -28285.094312 eV Core-core repulsion = 24294.003484 eV Total energy + Delta-G solvation = -3991.090828 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.85676 -40.04555 -38.58197 -36.60913 -36.13258 -34.96356 -32.22322 -31.87881 -31.33610 -30.31783 -29.37453 -27.69677 -25.47249 -24.16045 -23.23756 -22.42972 -21.53948 -21.12453 -20.40462 -19.01987 -17.86998 -17.09666 -16.65915 -15.84552 -15.80666 -15.70867 -15.56692 -14.80079 -14.64168 -14.52972 -14.20284 -14.10434 -13.89381 -13.47716 -13.24363 -13.11398 -12.81416 -12.73055 -12.68055 -12.26630 -12.02928 -11.86807 -11.60650 -11.26206 -11.12513 -11.05331 -10.72129 -10.45518 -10.26653 -10.03795 -9.90962 -9.62707 -9.45073 -9.12884 -8.74379 -8.61718 -8.43137 -7.09444 -6.06703 -3.48194 1.23844 1.95232 2.21521 2.73559 2.96148 3.22362 3.31330 3.42036 3.42655 3.99862 4.33967 4.41025 4.51257 4.63086 4.78156 4.85136 4.94358 5.05564 5.18631 5.26917 5.32985 5.44588 5.48916 5.65442 5.66170 5.69701 5.73807 5.84011 5.90007 5.99178 6.08184 6.18103 6.26235 6.31533 6.38738 6.46332 6.55756 6.63216 6.89136 7.40413 7.51676 7.76204 8.13574 8.19820 8.74900 9.55828 9.90607 11.08648 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.003123 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.716938 B = 8964.259977 C = 9704.039406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.030 3.970 3 Si 0.882 3.118 4 H -0.288 1.288 5 H -0.300 1.300 6 H -0.267 1.267 7 C -0.265 4.265 8 H 0.088 0.912 9 N -0.597 5.597 10 C 0.088 3.912 11 C 0.050 3.950 12 O -0.384 6.384 13 C 0.078 3.922 14 H 0.060 0.940 15 C -0.121 4.121 16 C 0.091 3.909 17 N -0.602 5.602 18 C 0.583 3.417 19 O -0.521 6.521 20 C -0.025 4.025 21 C -0.102 4.102 22 C -0.123 4.123 23 Cl -0.051 7.051 24 C 0.029 3.971 25 N -0.534 5.534 26 H 0.429 0.571 27 C 0.103 3.897 28 C 0.138 3.862 29 H 0.087 0.913 30 H 0.265 0.735 31 H 0.036 0.964 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.069 0.931 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.981 -10.452 -0.467 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.170 4.170 3 Si 0.712 3.288 4 H -0.216 1.216 5 H -0.228 1.228 6 H -0.192 1.192 7 C -0.392 4.392 8 H 0.106 0.894 9 N -0.321 5.321 10 C -0.037 4.037 11 C -0.028 4.028 12 O -0.304 6.304 13 C 0.019 3.981 14 H 0.078 0.922 15 C -0.160 4.160 16 C -0.033 4.033 17 N -0.336 5.336 18 C 0.370 3.630 19 O -0.397 6.397 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.156 4.156 23 Cl -0.022 7.022 24 C -0.108 4.108 25 N -0.138 5.138 26 H 0.274 0.726 27 C -0.021 4.021 28 C 0.030 3.970 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.071 0.929 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.174 0.826 40 H 0.197 0.803 41 H 0.087 0.913 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 20.669 -9.985 -0.084 22.955 hybrid contribution 0.267 1.048 -0.352 1.137 sum 20.936 -8.937 -0.435 22.768 Atomic orbital electron populations 1.69797 1.05732 1.26800 1.52201 1.25323 0.95254 0.97660 0.98763 0.86959 0.80287 0.84520 0.77069 1.21564 1.22773 1.19201 1.18863 0.82978 0.94740 1.42658 0.89412 1.44546 1.06782 1.34545 1.46218 1.22050 0.97612 0.92918 0.91144 1.23074 0.92166 0.92322 0.95268 1.87722 1.33987 1.43847 1.64805 1.22259 0.94177 0.88904 0.92754 0.92186 1.21790 0.96953 0.97475 0.99745 1.22162 0.95673 0.95870 0.89557 1.48156 1.37450 1.43040 1.04930 1.17051 0.82246 0.80955 0.82706 1.90882 1.53973 1.47827 1.46999 1.20449 0.94145 1.06646 0.92550 1.21161 0.97288 0.97455 0.96919 1.19957 0.99622 1.03965 0.92101 1.98328 1.85051 1.65865 1.52996 1.21772 0.98655 0.97741 0.92599 1.42894 1.20145 1.35724 1.15036 0.72575 1.22377 0.87178 0.91490 1.01013 1.21647 0.90179 0.92594 0.92552 0.89463 0.92512 0.94612 0.90073 0.89590 0.92936 0.89894 0.90026 0.90090 0.90017 0.82579 0.80317 0.91273 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.10 13.97 55.49 0.78 -26.33 16 2 C 0.03 0.85 5.27 -17.43 -0.09 0.75 16 3 Si 0.88 21.79 24.36 -169.99 -4.14 17.65 16 4 H -0.29 -6.78 6.76 56.52 0.38 -6.40 16 5 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 6 H -0.27 -6.49 6.33 56.52 0.36 -6.13 16 7 C -0.26 -7.13 10.13 -15.06 -0.15 -7.28 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 9 N -0.60 -13.43 2.46 -163.86 -0.40 -13.84 16 10 C 0.09 1.80 3.85 -3.56 -0.01 1.78 16 11 C 0.05 0.82 6.98 37.28 0.26 1.08 16 12 O -0.38 -6.06 9.58 -35.23 -0.34 -6.39 16 13 C 0.08 1.20 2.72 -26.89 -0.07 1.13 16 14 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 15 C -0.12 -1.35 5.82 -26.90 -0.16 -1.50 16 16 C 0.09 0.95 5.40 -3.70 -0.02 0.93 16 17 N -0.60 -8.76 2.96 -174.32 -0.52 -9.27 16 18 C 0.58 9.13 7.64 -12.86 -0.10 9.03 16 19 O -0.52 -10.35 16.39 5.19 0.09 -10.26 16 20 C -0.02 -0.30 6.46 -81.98 -0.53 -0.83 16 21 C -0.10 -1.24 10.73 -39.09 -0.42 -1.66 16 22 C -0.12 -1.24 6.66 -39.94 -0.27 -1.51 16 23 Cl -0.05 -0.48 29.30 -51.86 -1.52 -2.00 16 24 C 0.03 0.22 11.87 -16.85 -0.20 0.02 16 25 N -0.53 -4.42 4.81 -9.36 -0.04 -4.46 16 26 H 0.43 2.50 6.17 -40.82 -0.25 2.25 16 27 C 0.10 1.86 5.62 -3.72 -0.02 1.84 16 28 C 0.14 2.60 3.03 -67.07 -0.20 2.40 16 29 H 0.09 1.72 7.99 -51.93 -0.42 1.31 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.04 0.74 5.77 -51.93 -0.30 0.44 16 32 H 0.08 1.79 4.92 -51.92 -0.26 1.54 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 38 H 0.08 0.64 3.70 -51.93 -0.19 0.44 16 39 H 0.16 1.93 8.06 -52.49 -0.42 1.50 16 40 H 0.18 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.07 1.29 6.56 -51.93 -0.34 0.95 16 42 H 0.09 2.02 7.00 -51.93 -0.36 1.66 16 LS Contribution 339.43 15.07 5.12 5.12 Total: -1.00 -32.62 339.43 -8.08 -40.70 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.11 Total: 2.91 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -1.98 Total: 6.18 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.19 Total: -53.90 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: -0.25 Total: -16.66 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.14 Total: 17.65 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.62 -8.08 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074159306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.444 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds