Wall clock time and date at job start Tue Mar 31 2020 22:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99959 * 2 1 4 4 H 1.48503 * 109.46920 * 274.81050 * 3 2 1 5 5 H 1.48498 * 109.47231 * 34.81420 * 3 2 1 6 6 H 1.48501 * 109.46794 * 154.81514 * 3 2 1 7 7 C 1.38811 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00167 * 341.52068 * 7 2 1 9 9 N 1.36931 * 119.99946 * 161.52246 * 7 2 1 10 10 C 1.47171 * 121.22841 * 331.02695 * 9 7 2 11 11 C 1.53229 * 108.69945 * 230.96801 * 10 9 7 12 12 O 1.43074 * 109.45304 * 308.42797 * 11 10 9 13 13 C 1.42694 * 113.87556 * 61.63343 * 12 11 10 14 14 H 1.09003 * 108.92887 * 55.59868 * 13 12 11 15 15 C 1.52508 * 110.61701 * 174.65790 * 13 12 11 16 16 C 1.53158 * 109.79137 * 61.27448 * 15 13 12 17 17 N 1.46976 * 108.44723 * 54.52371 * 16 15 13 18 18 C 1.34770 * 120.72089 * 125.48908 * 17 16 15 19 19 O 1.21697 * 120.00058 * 181.36515 * 18 17 16 20 20 C 1.46671 * 120.00256 * 1.36018 * 18 17 16 21 21 C 1.37894 * 126.22192 * 204.83690 * 20 18 17 22 22 C 1.39892 * 107.09195 * 179.90279 * 21 20 18 23 23 Cl 1.73605 * 126.07349 * 180.17038 * 22 21 20 24 24 C 1.35511 * 107.85171 * 0.36255 * 22 21 20 25 25 N 1.35631 * 108.85345 * 359.77541 * 24 22 21 26 26 H 0.97002 * 125.67603 * 180.02562 * 25 24 22 27 27 C 1.46801 * 118.55736 * 305.45959 * 17 16 15 28 28 C 1.47601 * 121.22760 * 151.04650 * 9 7 2 29 29 H 1.08999 * 110.31499 * 7.65611 * 28 9 7 30 30 H 0.97001 * 119.99867 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.59981 * 111.20055 * 10 9 7 32 32 H 1.09008 * 109.59957 * 350.72519 * 10 9 7 33 33 H 1.08999 * 109.47293 * 188.44058 * 11 10 9 34 34 H 1.08994 * 109.47796 * 68.42758 * 11 10 9 35 35 H 1.08999 * 109.41581 * 181.36932 * 15 13 12 36 36 H 1.08998 * 109.41903 * 301.17481 * 15 13 12 37 37 H 1.09001 * 109.64072 * 294.83178 * 16 15 13 38 38 H 1.09001 * 109.63960 * 174.21000 * 16 15 13 39 39 H 1.08002 * 126.45555 * 0.03578 * 21 20 18 40 40 H 1.07997 * 125.57509 * 179.77728 * 24 22 21 41 41 H 1.09002 * 109.52053 * 294.38997 * 27 17 16 42 42 H 1.08996 * 109.57321 * 174.23347 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3960 2.1051 -1.3952 5 1 1.5022 2.6212 0.7993 6 1 3.5949 1.4129 0.5958 7 6 2.0102 -1.2022 -0.0005 8 1 1.5119 -2.1135 0.2955 9 7 3.3266 -1.2326 -0.3764 10 6 3.8682 -0.2590 -1.3380 11 6 4.6141 -1.0194 -2.4396 12 8 5.5508 -1.9226 -1.8447 13 6 4.9483 -2.9187 -1.0194 14 1 4.2035 -3.4589 -1.6038 15 6 5.9938 -3.9161 -0.5316 16 6 7.0496 -3.1914 0.3086 17 7 6.3658 -2.4589 1.3838 18 6 6.7110 -2.6474 2.6729 19 8 6.1193 -2.0526 3.5544 20 6 7.7996 -3.5695 3.0133 21 6 7.9633 -4.2293 4.2131 22 6 9.1248 -5.0012 4.1026 23 17 9.7873 -6.0327 5.3317 24 6 9.6431 -4.7973 2.8673 25 7 8.8466 -3.9290 2.1956 26 1 8.9908 -3.6140 1.2895 27 6 5.2992 -1.5170 1.0231 28 6 4.2545 -2.2433 0.1676 29 1 3.7085 -2.9806 0.7561 30 1 -0.4850 0.8401 0.0004 31 1 4.5569 0.4144 -0.8279 32 1 3.0516 0.3137 -1.7778 33 1 5.1458 -0.3106 -3.0743 34 1 3.8996 -1.5810 -3.0412 35 1 5.5095 -4.6807 0.0759 36 1 6.4739 -4.3866 -1.3896 37 1 7.6001 -2.4910 -0.3194 38 1 7.7368 -3.9190 0.7405 39 1 7.3156 -4.1643 5.0748 40 1 10.5433 -5.2519 2.4808 41 1 5.7219 -0.6879 0.4557 42 1 4.8272 -1.1356 1.9285 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074159306.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:59 Heat of formation + Delta-G solvation = -1.828307 kcal Electronic energy + Delta-G solvation = -28286.116481 eV Core-core repulsion = 24294.003484 eV Total energy + Delta-G solvation = -3992.112997 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.73756 -41.29551 -39.87405 -37.46311 -37.26638 -36.62301 -33.88938 -33.37296 -32.32169 -31.49982 -30.42286 -29.30087 -26.65293 -25.73503 -24.77617 -23.50598 -22.89337 -21.99397 -21.26646 -20.40301 -19.10509 -18.84783 -17.76298 -17.53139 -17.11321 -17.00550 -16.66580 -16.07320 -15.89959 -15.85459 -15.45754 -15.27881 -14.92361 -14.79125 -14.54410 -14.31471 -14.09763 -14.04413 -13.88573 -13.76831 -13.35329 -13.15936 -12.85388 -12.75040 -12.51810 -12.23184 -12.02831 -12.00140 -11.79837 -11.62957 -11.35473 -11.22843 -11.11820 -10.52673 -10.03067 -9.85920 -9.27792 -8.93371 -8.25603 -5.62571 0.31923 1.21102 1.23101 1.36896 1.43243 1.43447 1.66237 1.97529 2.32122 2.33928 2.73883 2.95378 3.12060 3.39720 3.71627 3.77219 3.98315 4.01189 4.07525 4.11875 4.18904 4.23499 4.26581 4.29889 4.46272 4.49217 4.58716 4.66432 4.73195 4.80465 4.86150 4.89177 4.93495 5.08031 5.15929 5.27510 5.33679 5.53846 5.73979 6.03200 6.18988 6.22776 6.30845 6.74906 6.94601 7.46203 7.86986 8.94075 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.003123 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.716938 B = 8964.259977 C = 9704.039406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.027 4.027 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.312 1.312 6 H -0.264 1.264 7 C -0.251 4.251 8 H 0.051 0.949 9 N -0.613 5.613 10 C 0.081 3.919 11 C 0.058 3.942 12 O -0.372 6.372 13 C 0.085 3.915 14 H 0.052 0.948 15 C -0.115 4.115 16 C 0.089 3.911 17 N -0.600 5.600 18 C 0.581 3.419 19 O -0.579 6.579 20 C -0.047 4.047 21 C -0.112 4.112 22 C -0.147 4.147 23 Cl -0.048 7.048 24 C 0.073 3.927 25 N -0.516 5.516 26 H 0.443 0.557 27 C 0.118 3.882 28 C 0.134 3.866 29 H 0.064 0.936 30 H 0.264 0.736 31 H 0.038 0.962 32 H 0.063 0.937 33 H 0.124 0.876 34 H 0.051 0.949 35 H 0.085 0.915 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.115 0.885 39 H 0.139 0.861 40 H 0.228 0.772 41 H 0.069 0.931 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.826 -11.781 -2.720 28.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.223 4.223 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.241 1.241 6 H -0.189 1.189 7 C -0.381 4.381 8 H 0.068 0.932 9 N -0.338 5.338 10 C -0.043 4.043 11 C -0.020 4.020 12 O -0.291 6.291 13 C 0.026 3.974 14 H 0.070 0.930 15 C -0.153 4.153 16 C -0.032 4.032 17 N -0.331 5.331 18 C 0.371 3.629 19 O -0.459 6.459 20 C -0.160 4.160 21 C -0.139 4.139 22 C -0.179 4.179 23 Cl -0.019 7.019 24 C -0.066 4.066 25 N -0.121 5.121 26 H 0.292 0.708 27 C -0.007 4.007 28 C 0.027 3.973 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.139 0.861 37 H 0.118 0.882 38 H 0.132 0.868 39 H 0.157 0.843 40 H 0.244 0.756 41 H 0.087 0.913 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 25.588 -11.344 -2.405 28.093 hybrid contribution -1.189 1.298 0.416 1.809 sum 24.399 -10.046 -1.989 26.461 Atomic orbital electron populations 1.69927 1.07384 1.27425 1.55110 1.25931 0.95844 1.00920 0.99588 0.85949 0.78651 0.80149 0.78007 1.18974 1.24110 1.18874 1.18750 0.85064 0.93345 1.40900 0.93154 1.44622 1.05897 1.35761 1.47479 1.22155 0.97344 0.92986 0.91844 1.23024 0.92444 0.92676 0.93814 1.87746 1.33391 1.43569 1.64402 1.22219 0.95461 0.89037 0.90698 0.92980 1.21835 0.95997 0.96241 1.01241 1.22506 0.95676 0.96553 0.88489 1.48140 1.36529 1.42571 1.05909 1.17516 0.82515 0.80667 0.82245 1.90847 1.56230 1.50197 1.48642 1.19729 0.94981 1.07640 0.93664 1.21214 0.98085 0.98048 0.96571 1.20044 0.99545 1.04794 0.93529 1.98331 1.84779 1.65662 1.53173 1.22473 0.98292 0.94833 0.90959 1.42786 1.18836 1.35235 1.15282 0.70797 1.21852 0.88015 0.92117 0.98730 1.21774 0.89799 0.91474 0.94288 0.91770 0.92708 0.94448 0.91872 0.85787 0.93076 0.89649 0.86094 0.88202 0.86778 0.84279 0.75565 0.91327 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.02 13.97 21.65 0.30 -59.72 16 2 C -0.03 -1.59 5.27 84.86 0.45 -1.15 16 3 Si 0.94 46.52 24.36 68.60 1.67 48.19 16 4 H -0.26 -11.85 6.76 99.48 0.67 -11.18 16 5 H -0.31 -15.90 7.11 99.48 0.71 -15.20 16 6 H -0.26 -12.69 6.33 99.48 0.63 -12.06 16 7 C -0.25 -14.26 10.13 84.03 0.85 -13.41 16 8 H 0.05 3.16 8.06 -2.91 -0.02 3.14 16 9 N -0.61 -28.24 2.46 -672.35 -1.66 -29.89 16 10 C 0.08 3.24 3.85 86.33 0.33 3.57 16 11 C 0.06 1.75 6.98 72.06 0.50 2.25 16 12 O -0.37 -10.38 9.58 -148.98 -1.43 -11.80 16 13 C 0.09 2.43 2.72 30.49 0.08 2.52 16 14 H 0.05 1.60 8.13 -2.39 -0.02 1.58 16 15 C -0.11 -2.10 5.82 30.48 0.18 -1.93 16 16 C 0.09 1.50 5.40 86.34 0.47 1.96 16 17 N -0.60 -16.85 2.96 -823.65 -2.44 -19.29 16 18 C 0.58 18.29 7.64 86.45 0.66 18.95 16 19 O -0.58 -24.43 16.39 -4.34 -0.07 -24.50 16 20 C -0.05 -1.08 6.46 40.35 0.26 -0.82 16 21 C -0.11 -2.63 10.73 22.59 0.24 -2.39 16 22 C -0.15 -2.54 6.66 22.04 0.15 -2.40 16 23 Cl -0.05 -0.80 29.30 -2.72 -0.08 -0.88 16 24 C 0.07 0.73 11.87 83.48 0.99 1.73 16 25 N -0.52 -6.25 4.81 -183.51 -0.88 -7.13 16 26 H 0.44 2.64 6.17 -92.71 -0.57 2.07 16 27 C 0.12 4.35 5.62 86.43 0.49 4.83 16 28 C 0.13 5.12 3.03 44.95 0.14 5.25 16 29 H 0.06 2.70 7.99 -2.39 -0.02 2.68 16 30 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 31 H 0.04 1.49 5.77 -2.39 -0.01 1.47 16 32 H 0.06 2.74 4.92 -2.38 -0.01 2.73 16 33 H 0.12 2.85 8.14 -2.39 -0.02 2.83 16 34 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.10 1.42 7.94 -2.39 -0.02 1.40 16 38 H 0.11 1.18 3.70 -2.39 -0.01 1.17 16 39 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 40 H 0.23 0.19 8.06 -2.91 -0.02 0.16 16 41 H 0.07 2.53 6.56 -2.39 -0.02 2.51 16 42 H 0.05 2.37 7.00 -2.39 -0.02 2.35 16 Total: -1.00 -78.86 339.43 1.59 -77.26 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: 0.39 Total: 8.79 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 5.78 Total: 18.98 kcal Atomic # 7 Polarization: -111.36 SS G_CDS: -4.67 Total: -116.04 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -1.50 Total: -36.30 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -0.08 Total: -0.88 kcal Total: -78.86 1.59 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074159306.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.433 kcal (2) G-P(sol) polarization free energy of solvation -78.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds