Wall clock time and date at job start Tue Mar 31 2020 22:36:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99855 * 2 1 4 4 H 1.48493 * 109.46939 * 270.00102 * 3 2 1 5 5 H 1.48496 * 109.46872 * 30.00121 * 3 2 1 6 6 H 1.48500 * 109.47102 * 150.00101 * 3 2 1 7 7 C 1.38811 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00373 * 165.14169 * 7 2 1 9 9 N 1.36938 * 119.99674 * 345.15010 * 7 2 1 10 10 C 1.47357 * 121.30316 * 331.27248 * 9 7 2 11 11 C 1.53196 * 108.79770 * 230.22673 * 10 9 7 12 12 O 1.43151 * 109.73122 * 308.77303 * 11 10 9 13 13 C 1.42594 * 113.63708 * 61.70054 * 12 11 10 14 14 H 1.09005 * 108.95586 * 55.85079 * 13 12 11 15 15 C 1.52784 * 111.12093 * 176.38965 * 13 12 11 16 16 C 1.53365 * 108.81306 * 182.55265 * 15 13 12 17 17 N 1.46844 * 109.25368 * 306.16998 * 16 15 13 18 18 C 1.34775 * 120.40691 * 232.21577 * 17 16 15 19 19 O 1.21699 * 119.99656 * 174.28479 * 18 17 16 20 20 C 1.46660 * 120.00277 * 354.28979 * 18 17 16 21 21 C 1.37894 * 126.22522 * 159.42125 * 20 18 17 22 22 C 1.39893 * 107.09720 * 179.97438 * 21 20 18 23 23 Cl 1.73594 * 126.07432 * 180.02562 * 22 21 20 24 24 C 1.35515 * 107.85048 * 359.97438 * 22 21 20 25 25 N 1.35630 * 108.85149 * 359.77649 * 24 22 21 26 26 H 0.97004 * 125.67653 * 180.26861 * 25 24 22 27 27 C 1.47129 * 119.18084 * 52.23568 * 17 16 15 28 28 C 1.46868 * 121.30596 * 151.25354 * 9 7 2 29 29 H 1.08999 * 109.65708 * 248.37979 * 28 9 7 30 30 H 0.97001 * 120.00130 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58084 * 350.01700 * 10 9 7 32 32 H 1.08998 * 109.58374 * 110.42517 * 10 9 7 33 33 H 1.08998 * 109.42795 * 68.85482 * 11 10 9 34 34 H 1.09002 * 109.42291 * 188.75150 * 11 10 9 35 35 H 1.08991 * 109.58596 * 62.74868 * 15 13 12 36 36 H 1.09005 * 109.57988 * 302.34455 * 15 13 12 37 37 H 1.08997 * 109.51239 * 66.10829 * 16 15 13 38 38 H 1.09000 * 109.51053 * 186.19765 * 16 15 13 39 39 H 1.08003 * 126.45247 * 359.97438 * 21 20 18 40 40 H 1.08001 * 125.57256 * 179.97438 * 24 22 21 41 41 H 1.08995 * 109.72690 * 66.44868 * 27 17 16 42 42 H 1.09007 * 109.72163 * 187.11540 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0632 -1.2178 -0.2393 9 7 1.3600 -2.3681 0.3050 10 6 0.1905 -2.3809 1.2014 11 6 0.4039 -3.4515 2.2761 12 8 0.7537 -4.6942 1.6576 13 6 1.9692 -4.6405 0.9139 14 1 2.7693 -4.2935 1.5678 15 6 2.3332 -6.0146 0.3539 16 6 3.6763 -5.9100 -0.3791 17 7 3.6007 -4.8358 -1.3774 18 6 3.9439 -5.0706 -2.6594 19 8 3.7804 -4.2068 -3.5010 20 6 4.5142 -6.3669 -3.0403 21 6 4.5442 -6.9023 -4.3107 22 6 5.1769 -8.1465 -4.2177 23 17 5.4766 -9.2415 -5.5310 24 6 5.5153 -8.3446 -2.9206 25 7 5.1226 -7.2676 -2.1958 26 1 5.2478 -7.1521 -1.2409 27 6 3.1461 -3.5000 -0.9607 28 6 1.8005 -3.6548 -0.2493 29 1 1.0548 -4.0257 -0.9525 30 1 -0.4850 0.8400 0.0004 31 1 0.0821 -1.4049 1.6745 32 1 -0.7069 -2.6127 0.6278 33 1 1.2072 -3.1400 2.9437 34 1 -0.5148 -3.5785 2.8488 35 1 1.5613 -6.3414 -0.3427 36 1 2.4179 -6.7313 1.1709 37 1 4.4659 -5.6857 0.3380 38 1 3.8941 -6.8552 -0.8764 39 1 4.1530 -6.4469 -5.2084 40 1 6.0186 -9.2161 -2.5286 41 1 3.8740 -3.0596 -0.2793 42 1 3.0281 -2.8618 -1.8365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074159308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:09 Heat of formation + Delta-G solvation = 15.702253 kcal Electronic energy + Delta-G solvation = -28028.055056 eV Core-core repulsion = 24036.702242 eV Total energy + Delta-G solvation = -3991.352815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -41.84668 -39.83351 -38.44692 -36.60137 -36.26660 -34.77996 -32.18928 -31.56645 -31.20074 -30.17204 -29.30094 -27.10836 -25.51645 -24.17196 -22.88002 -22.08581 -21.22250 -20.80720 -20.32785 -19.73558 -17.86287 -16.89546 -16.64363 -15.77116 -15.55139 -15.50554 -15.15398 -14.65554 -14.62156 -14.45043 -14.07775 -13.79149 -13.70535 -13.36077 -13.17980 -13.10908 -12.95273 -12.75699 -12.58712 -12.06703 -11.93457 -11.47665 -11.09454 -11.03346 -10.99783 -10.93621 -10.67332 -10.35892 -10.29831 -10.08000 -9.97703 -9.67881 -9.12975 -9.07913 -8.63897 -8.58750 -8.41889 -6.77402 -5.89037 -3.36044 1.23320 1.96554 2.22274 2.73883 2.98090 3.30479 3.32955 3.40097 3.40516 4.13262 4.34362 4.39416 4.57688 4.64656 4.91489 4.96368 5.09925 5.21341 5.27192 5.32265 5.37714 5.53701 5.62454 5.66903 5.77614 5.80044 5.99690 6.03800 6.13344 6.19105 6.24580 6.33400 6.37310 6.51162 6.60854 6.78133 6.90149 7.04761 7.38815 7.44363 7.65934 7.80525 8.14384 8.27707 9.04376 9.67597 10.25812 11.19176 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003076 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.963945 B = 9100.038705 C =10259.264118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.009 3.991 3 Si 0.904 3.096 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.263 4.263 8 H 0.071 0.929 9 N -0.587 5.587 10 C 0.144 3.856 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.078 3.922 14 H 0.053 0.947 15 C -0.122 4.122 16 C 0.091 3.909 17 N -0.609 5.609 18 C 0.586 3.414 19 O -0.516 6.516 20 C -0.026 4.026 21 C -0.100 4.100 22 C -0.124 4.124 23 Cl -0.051 7.051 24 C 0.030 3.970 25 N -0.535 5.535 26 H 0.428 0.572 27 C 0.125 3.875 28 C 0.136 3.864 29 H 0.039 0.961 30 H 0.256 0.744 31 H 0.093 0.907 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.075 0.925 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.169 -18.174 0.110 20.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.190 4.190 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.391 4.391 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.018 3.982 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.018 3.982 14 H 0.071 0.929 15 C -0.161 4.161 16 C -0.033 4.033 17 N -0.343 5.343 18 C 0.373 3.627 19 O -0.391 6.391 20 C -0.140 4.140 21 C -0.126 4.126 22 C -0.157 4.157 23 Cl -0.022 7.022 24 C -0.106 4.106 25 N -0.139 5.139 26 H 0.273 0.727 27 C 0.004 3.996 28 C 0.028 3.972 29 H 0.057 0.943 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.047 0.953 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.175 0.825 40 H 0.197 0.803 41 H 0.093 0.907 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 9.886 -17.688 -0.261 20.265 hybrid contribution 0.507 0.969 0.376 1.156 sum 10.394 -16.719 0.115 19.687 Atomic orbital electron populations 1.70010 1.05337 1.25802 1.53084 1.25112 0.95324 0.98538 1.00053 0.86287 0.79087 0.83397 0.77962 1.21080 1.21472 1.20377 1.19083 0.91993 0.83951 1.44120 0.91145 1.44006 1.34261 1.01234 1.51673 1.21417 0.89157 0.97563 0.90061 1.23348 0.99068 0.85376 0.96053 1.87740 1.41202 1.33682 1.68178 1.22399 0.87306 0.94629 0.93852 0.92943 1.21806 0.96482 0.97576 1.00248 1.22167 0.98709 0.90769 0.91636 1.48193 1.65827 1.12536 1.07703 1.17013 0.78338 0.85086 0.82256 1.90891 1.54503 1.44667 1.49073 1.20452 1.09244 0.93769 0.90495 1.21174 1.01591 0.93563 0.96266 1.19962 1.11301 0.95135 0.89311 1.98327 1.95159 1.62115 1.46617 1.21778 1.04787 0.93384 0.90685 1.42876 1.45242 1.15036 1.10702 0.72653 1.21853 0.95596 0.80976 1.01214 1.21301 0.94215 0.88798 0.92860 0.94346 0.93404 0.88859 0.95285 0.94076 0.89987 0.90506 0.90053 0.90777 0.89419 0.82522 0.80281 0.90652 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.23 55.49 0.62 -24.84 16 2 C 0.01 0.25 4.99 -17.43 -0.09 0.17 16 3 Si 0.90 21.20 29.58 -169.99 -5.03 16.17 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 6 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.86 8.84 -15.06 -0.13 -6.99 16 8 H 0.07 1.78 6.31 -52.49 -0.33 1.45 16 9 N -0.59 -14.20 3.03 -164.35 -0.50 -14.69 16 10 C 0.14 3.34 5.41 -3.47 -0.02 3.32 16 11 C 0.04 0.74 6.95 37.26 0.26 1.00 16 12 O -0.39 -7.33 10.49 -35.23 -0.37 -7.70 16 13 C 0.08 1.33 2.48 -26.64 -0.07 1.26 16 14 H 0.05 0.90 8.13 -51.93 -0.42 0.47 16 15 C -0.12 -1.54 5.82 -26.65 -0.16 -1.70 16 16 C 0.09 0.95 5.30 -3.67 -0.02 0.93 16 17 N -0.61 -9.03 2.98 -174.23 -0.52 -9.55 16 18 C 0.59 9.32 7.63 -12.86 -0.10 9.23 16 19 O -0.52 -10.39 16.35 5.19 0.08 -10.30 16 20 C -0.03 -0.33 6.46 -81.99 -0.53 -0.86 16 21 C -0.10 -1.23 10.71 -39.09 -0.42 -1.65 16 22 C -0.12 -1.27 6.66 -39.93 -0.27 -1.53 16 23 Cl -0.05 -0.48 29.30 -51.86 -1.52 -2.00 16 24 C 0.03 0.23 11.87 -16.85 -0.20 0.03 16 25 N -0.53 -4.46 4.80 -9.36 -0.04 -4.51 16 26 H 0.43 2.45 6.08 -40.82 -0.25 2.21 16 27 C 0.12 2.33 4.51 -3.70 -0.02 2.31 16 28 C 0.14 2.79 3.03 -67.53 -0.20 2.59 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 31 H 0.09 2.36 6.31 -51.93 -0.33 2.03 16 32 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.09 0.70 3.97 -51.93 -0.21 0.50 16 39 H 0.16 1.96 8.06 -52.48 -0.42 1.54 16 40 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 41 H 0.08 1.38 7.37 -51.93 -0.38 1.00 16 42 H 0.11 2.33 6.80 -51.92 -0.35 1.98 16 LS Contribution 346.12 15.07 5.22 5.22 Total: -1.00 -32.12 346.12 -9.22 -41.34 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -5.21 Total: 2.75 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -1.95 Total: 8.13 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -0.44 Total: -53.59 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.28 Total: -18.01 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.17 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.12 -9.22 -41.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074159308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.046 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds