Wall clock time and date at job start Tue Mar 31 2020 22:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86809 * 119.99855 * 2 1 4 4 H 1.48493 * 109.46939 * 270.00102 * 3 2 1 5 5 H 1.48496 * 109.46872 * 30.00121 * 3 2 1 6 6 H 1.48500 * 109.47102 * 150.00101 * 3 2 1 7 7 C 1.38811 * 120.00574 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00373 * 165.14169 * 7 2 1 9 9 N 1.36938 * 119.99674 * 345.15010 * 7 2 1 10 10 C 1.47357 * 121.30316 * 331.27248 * 9 7 2 11 11 C 1.53196 * 108.79770 * 230.22673 * 10 9 7 12 12 O 1.43151 * 109.73122 * 308.77303 * 11 10 9 13 13 C 1.42594 * 113.63708 * 61.70054 * 12 11 10 14 14 H 1.09005 * 108.95586 * 55.85079 * 13 12 11 15 15 C 1.52784 * 111.12093 * 176.38965 * 13 12 11 16 16 C 1.53365 * 108.81306 * 182.55265 * 15 13 12 17 17 N 1.46844 * 109.25368 * 306.16998 * 16 15 13 18 18 C 1.34775 * 120.40691 * 232.21577 * 17 16 15 19 19 O 1.21699 * 119.99656 * 174.28479 * 18 17 16 20 20 C 1.46660 * 120.00277 * 354.28979 * 18 17 16 21 21 C 1.37894 * 126.22522 * 159.42125 * 20 18 17 22 22 C 1.39893 * 107.09720 * 179.97438 * 21 20 18 23 23 Cl 1.73594 * 126.07432 * 180.02562 * 22 21 20 24 24 C 1.35515 * 107.85048 * 359.97438 * 22 21 20 25 25 N 1.35630 * 108.85149 * 359.77649 * 24 22 21 26 26 H 0.97004 * 125.67653 * 180.26861 * 25 24 22 27 27 C 1.47129 * 119.18084 * 52.23568 * 17 16 15 28 28 C 1.46868 * 121.30596 * 151.25354 * 9 7 2 29 29 H 1.08999 * 109.65708 * 248.37979 * 28 9 7 30 30 H 0.97001 * 120.00130 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.58084 * 350.01700 * 10 9 7 32 32 H 1.08998 * 109.58374 * 110.42517 * 10 9 7 33 33 H 1.08998 * 109.42795 * 68.85482 * 11 10 9 34 34 H 1.09002 * 109.42291 * 188.75150 * 11 10 9 35 35 H 1.08991 * 109.58596 * 62.74868 * 15 13 12 36 36 H 1.09005 * 109.57988 * 302.34455 * 15 13 12 37 37 H 1.08997 * 109.51239 * 66.10829 * 16 15 13 38 38 H 1.09000 * 109.51053 * 186.19765 * 16 15 13 39 39 H 1.08003 * 126.45247 * 359.97438 * 21 20 18 40 40 H 1.08001 * 125.57256 * 179.97438 * 24 22 21 41 41 H 1.08995 * 109.72690 * 66.44868 * 27 17 16 42 42 H 1.09007 * 109.72163 * 187.11540 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0632 -1.2178 -0.2393 9 7 1.3600 -2.3681 0.3050 10 6 0.1905 -2.3809 1.2014 11 6 0.4039 -3.4515 2.2761 12 8 0.7537 -4.6942 1.6576 13 6 1.9692 -4.6405 0.9139 14 1 2.7693 -4.2935 1.5678 15 6 2.3332 -6.0146 0.3539 16 6 3.6763 -5.9100 -0.3791 17 7 3.6007 -4.8358 -1.3774 18 6 3.9439 -5.0706 -2.6594 19 8 3.7804 -4.2068 -3.5010 20 6 4.5142 -6.3669 -3.0403 21 6 4.5442 -6.9023 -4.3107 22 6 5.1769 -8.1465 -4.2177 23 17 5.4766 -9.2415 -5.5310 24 6 5.5153 -8.3446 -2.9206 25 7 5.1226 -7.2676 -2.1958 26 1 5.2478 -7.1521 -1.2409 27 6 3.1461 -3.5000 -0.9607 28 6 1.8005 -3.6548 -0.2493 29 1 1.0548 -4.0257 -0.9525 30 1 -0.4850 0.8400 0.0004 31 1 0.0821 -1.4049 1.6745 32 1 -0.7069 -2.6127 0.6278 33 1 1.2072 -3.1400 2.9437 34 1 -0.5148 -3.5785 2.8488 35 1 1.5613 -6.3414 -0.3427 36 1 2.4179 -6.7313 1.1709 37 1 4.4659 -5.6857 0.3380 38 1 3.8941 -6.8552 -0.8764 39 1 4.1530 -6.4469 -5.2084 40 1 6.0186 -9.2161 -2.5286 41 1 3.8740 -3.0596 -0.2793 42 1 3.0281 -2.8618 -1.8365 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074159308.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:08 Heat of formation + Delta-G solvation = -6.541117 kcal Electronic energy + Delta-G solvation = -28029.019601 eV Core-core repulsion = 24036.702242 eV Total energy + Delta-G solvation = -3992.317360 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.73887 -41.13316 -39.84665 -37.62811 -37.30736 -36.56394 -33.69178 -33.10069 -32.25811 -31.49822 -30.38145 -28.82738 -26.92325 -25.68731 -24.22865 -23.45413 -22.30792 -21.93703 -21.40572 -21.15780 -18.98509 -18.66695 -17.84982 -17.20407 -16.94352 -16.71920 -16.65800 -16.20298 -15.73856 -15.59442 -15.38225 -15.24556 -14.92112 -14.72031 -14.67683 -14.32799 -14.03140 -13.90203 -13.88659 -13.37770 -13.04884 -12.85094 -12.84042 -12.68260 -12.45586 -12.36021 -12.08184 -11.96373 -11.80612 -11.79570 -11.29498 -11.24353 -10.77981 -10.55176 -10.03331 -9.82034 -9.27444 -8.75408 -7.93978 -5.44058 0.29641 1.23422 1.42932 1.43623 1.45159 1.53780 1.63452 2.00322 2.28470 2.45207 2.80803 3.22078 3.36326 3.40830 3.74916 3.80284 3.96489 4.06078 4.14548 4.15601 4.19448 4.28957 4.33703 4.47085 4.51082 4.52121 4.56246 4.73280 4.81345 4.86219 4.95929 5.03712 5.08569 5.20579 5.32068 5.32945 5.50340 5.53112 5.59719 6.20018 6.23613 6.29853 6.31747 6.92843 7.02161 7.69390 8.25428 9.12432 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016966 B = 0.003076 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.963945 B = 9100.038705 C =10259.264118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.047 4.047 3 Si 0.967 3.033 4 H -0.291 1.291 5 H -0.290 1.290 6 H -0.263 1.263 7 C -0.263 4.263 8 H 0.076 0.924 9 N -0.605 5.605 10 C 0.147 3.853 11 C 0.053 3.947 12 O -0.392 6.392 13 C 0.082 3.918 14 H 0.065 0.935 15 C -0.115 4.115 16 C 0.089 3.911 17 N -0.606 5.606 18 C 0.582 3.418 19 O -0.576 6.576 20 C -0.049 4.049 21 C -0.110 4.110 22 C -0.148 4.148 23 Cl -0.047 7.047 24 C 0.075 3.925 25 N -0.516 5.516 26 H 0.444 0.556 27 C 0.140 3.860 28 C 0.132 3.868 29 H 0.000 1.000 30 H 0.251 0.749 31 H 0.068 0.932 32 H -0.006 1.006 33 H 0.054 0.946 34 H 0.108 0.892 35 H 0.061 0.939 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.120 0.880 39 H 0.139 0.861 40 H 0.229 0.771 41 H 0.083 0.917 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.027 -21.618 2.279 25.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.243 4.243 3 Si 0.794 3.206 4 H -0.218 1.218 5 H -0.216 1.216 6 H -0.188 1.188 7 C -0.393 4.393 8 H 0.094 0.906 9 N -0.330 5.330 10 C 0.021 3.979 11 C -0.025 4.025 12 O -0.311 6.311 13 C 0.023 3.977 14 H 0.082 0.918 15 C -0.153 4.153 16 C -0.033 4.033 17 N -0.339 5.339 18 C 0.373 3.627 19 O -0.455 6.455 20 C -0.162 4.162 21 C -0.138 4.138 22 C -0.180 4.180 23 Cl -0.019 7.019 24 C -0.063 4.063 25 N -0.121 5.121 26 H 0.293 0.707 27 C 0.017 3.983 28 C 0.025 3.975 29 H 0.018 0.982 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.012 0.988 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.080 0.920 36 H 0.140 0.860 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.246 0.754 41 H 0.101 0.899 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.768 -21.187 1.963 24.814 hybrid contribution -0.384 1.924 -0.401 2.003 sum 12.384 -19.262 1.562 22.953 Atomic orbital electron populations 1.70172 1.06776 1.26045 1.55085 1.25889 0.96068 1.01677 1.00665 0.85297 0.78395 0.79487 0.77418 1.21769 1.21605 1.18752 1.19438 0.92440 0.84849 1.42558 0.90596 1.44311 1.34236 1.02160 1.52264 1.21284 0.87787 0.98074 0.90711 1.23174 1.00895 0.83968 0.94416 1.87749 1.42182 1.33058 1.68145 1.22501 0.86970 0.96236 0.92033 0.91756 1.21851 0.96976 0.95335 1.01186 1.22568 0.98754 0.90609 0.91327 1.48197 1.65059 1.12091 1.08521 1.17510 0.77605 0.85828 0.81804 1.90854 1.57070 1.46888 1.50718 1.19715 1.11879 0.93294 0.91337 1.21228 1.01772 0.94815 0.95939 1.20052 1.12501 0.94724 0.90749 1.98329 1.95137 1.61638 1.46801 1.22495 1.01233 0.93287 0.89332 1.42765 1.44068 1.14105 1.11162 0.70750 1.21364 0.94923 0.82926 0.99094 1.21464 0.93892 0.88131 0.94040 0.98234 0.93972 0.91336 0.98828 0.92793 0.87360 0.91996 0.85956 0.86977 0.86306 0.84295 0.75433 0.89923 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.68 11.23 21.65 0.24 -55.44 16 2 C -0.05 -2.63 4.99 84.86 0.42 -2.21 16 3 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 6 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.26 -14.23 8.84 84.03 0.74 -13.48 16 8 H 0.08 3.94 6.31 -2.91 -0.02 3.92 16 9 N -0.60 -30.36 3.03 -673.90 -2.04 -32.41 16 10 C 0.15 7.12 5.41 86.28 0.47 7.59 16 11 C 0.05 1.96 6.95 72.05 0.50 2.46 16 12 O -0.39 -14.09 10.49 -148.98 -1.56 -15.65 16 13 C 0.08 2.64 2.48 30.66 0.08 2.72 16 14 H 0.06 1.98 8.13 -2.38 -0.02 1.96 16 15 C -0.12 -2.48 5.82 30.64 0.18 -2.30 16 16 C 0.09 1.51 5.30 86.44 0.46 1.96 16 17 N -0.61 -17.57 2.98 -823.37 -2.45 -20.02 16 18 C 0.58 18.84 7.63 86.44 0.66 19.50 16 19 O -0.58 -24.84 16.35 -4.35 -0.07 -24.91 16 20 C -0.05 -1.16 6.46 40.35 0.26 -0.89 16 21 C -0.11 -2.66 10.71 22.59 0.24 -2.42 16 22 C -0.15 -2.62 6.66 22.04 0.15 -2.47 16 23 Cl -0.05 -0.81 29.30 -2.72 -0.08 -0.89 16 24 C 0.07 0.77 11.87 83.48 0.99 1.76 16 25 N -0.52 -6.32 4.80 -183.51 -0.88 -7.20 16 26 H 0.44 2.48 6.08 -92.71 -0.56 1.92 16 27 C 0.14 5.37 4.51 86.26 0.39 5.76 16 28 C 0.13 5.58 3.03 45.05 0.14 5.71 16 29 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 31 H 0.07 3.63 6.31 -2.39 -0.02 3.62 16 32 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 33 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 35 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.12 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.12 1.29 3.97 -2.39 -0.01 1.28 16 39 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 40 H 0.23 0.19 8.06 -2.91 -0.02 0.17 16 41 H 0.08 3.03 7.37 -2.39 -0.02 3.01 16 42 H 0.06 2.92 6.80 -2.38 -0.02 2.90 16 Total: -1.00 -78.17 346.12 1.36 -76.82 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 0.51 Total: 9.12 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 5.67 Total: 23.68 kcal Atomic # 7 Polarization: -109.93 SS G_CDS: -5.14 Total: -115.07 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -1.63 Total: -40.56 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.89 kcal Total: -78.17 1.36 -76.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074159308.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.275 kcal (2) G-P(sol) polarization free energy of solvation -78.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds